Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01400 and EX31_RS01405 are separated by 243 nucleotides EX31_RS01405 and EX31_RS01410 are separated by 209 nucleotides
EX31_RS01400: EX31_RS01400 - dihydrodipicolinate synthase family protein, at 312,063 to 312,953
_RS01400
EX31_RS01405: EX31_RS01405 - hypothetical protein, at 313,197 to 313,604
_RS01405
EX31_RS01410: EX31_RS01410 - hypothetical protein, at 313,814 to 315,163
_RS01410
Position (kb) 313
314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 312.201 kb on + strand, within EX31_RS01400 at 312.201 kb on + strand, within EX31_RS01400 at 312.201 kb on + strand, within EX31_RS01400 at 312.201 kb on + strand, within EX31_RS01400 at 312.202 kb on - strand, within EX31_RS01400 at 312.202 kb on - strand, within EX31_RS01400 at 312.202 kb on - strand, within EX31_RS01400 at 312.202 kb on - strand, within EX31_RS01400 at 312.310 kb on + strand, within EX31_RS01400 at 312.310 kb on + strand, within EX31_RS01400 at 312.310 kb on + strand, within EX31_RS01400 at 312.310 kb on + strand, within EX31_RS01400 at 312.311 kb on - strand, within EX31_RS01400 at 312.404 kb on + strand, within EX31_RS01400 at 312.405 kb on - strand, within EX31_RS01400 at 312.453 kb on + strand, within EX31_RS01400 at 312.506 kb on + strand, within EX31_RS01400 at 312.920 kb on + strand at 312.941 kb on - strand at 312.981 kb on + strand at 312.981 kb on + strand at 313.003 kb on + strand at 313.115 kb on + strand at 313.116 kb on - strand at 313.196 kb on - strand at 313.204 kb on - strand at 313.256 kb on - strand, within EX31_RS01405 at 313.282 kb on - strand, within EX31_RS01405 at 313.296 kb on + strand, within EX31_RS01405 at 313.296 kb on + strand, within EX31_RS01405 at 313.334 kb on + strand, within EX31_RS01405 at 313.371 kb on - strand, within EX31_RS01405 at 313.371 kb on - strand, within EX31_RS01405 at 313.373 kb on + strand, within EX31_RS01405 at 313.373 kb on + strand, within EX31_RS01405 at 313.374 kb on - strand, within EX31_RS01405 at 313.433 kb on - strand, within EX31_RS01405 at 313.445 kb on + strand, within EX31_RS01405 at 313.545 kb on + strand, within EX31_RS01405 at 313.546 kb on - strand, within EX31_RS01405 at 313.546 kb on - strand, within EX31_RS01405 at 313.571 kb on - strand at 313.710 kb on + strand at 313.733 kb on - strand at 313.798 kb on + strand at 313.798 kb on + strand at 313.799 kb on - strand at 313.799 kb on - strand at 313.799 kb on - strand at 313.799 kb on - strand at 313.799 kb on - strand at 313.799 kb on - strand at 313.799 kb on - strand at 313.799 kb on - strand at 313.917 kb on + strand at 313.970 kb on - strand, within EX31_RS01410 at 314.198 kb on + strand, within EX31_RS01410 at 314.198 kb on + strand, within EX31_RS01410 at 314.198 kb on + strand, within EX31_RS01410 at 314.198 kb on + strand, within EX31_RS01410 at 314.199 kb on - strand, within EX31_RS01410 at 314.199 kb on - strand, within EX31_RS01410 at 314.199 kb on - strand, within EX31_RS01410 at 314.199 kb on - strand, within EX31_RS01410 at 314.199 kb on - strand, within EX31_RS01410 at 314.199 kb on - strand, within EX31_RS01410 at 314.290 kb on + strand, within EX31_RS01410 at 314.290 kb on + strand, within EX31_RS01410 at 314.291 kb on - strand, within EX31_RS01410 at 314.532 kb on + strand, within EX31_RS01410 at 314.532 kb on + strand, within EX31_RS01410 at 314.532 kb on + strand, within EX31_RS01410 at 314.532 kb on + strand, within EX31_RS01410 at 314.534 kb on + strand, within EX31_RS01410 at 314.535 kb on - strand, within EX31_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 312,201 + EX31_RS01400 0.15 +1.0 312,201 + EX31_RS01400 0.15 -1.7 312,201 + EX31_RS01400 0.15 -0.8 312,201 + EX31_RS01400 0.15 -0.6 312,202 - EX31_RS01400 0.16 -1.6 312,202 - EX31_RS01400 0.16 +2.3 312,202 - EX31_RS01400 0.16 +1.5 312,202 - EX31_RS01400 0.16 -2.4 312,310 + EX31_RS01400 0.28 +1.1 312,310 + EX31_RS01400 0.28 +0.2 312,310 + EX31_RS01400 0.28 +0.1 312,310 + EX31_RS01400 0.28 +1.7 312,311 - EX31_RS01400 0.28 -0.6 312,404 + EX31_RS01400 0.38 +1.2 312,405 - EX31_RS01400 0.38 -1.3 312,453 + EX31_RS01400 0.44 +0.6 312,506 + EX31_RS01400 0.50 +0.2 312,920 + -0.5 312,941 - +1.0 312,981 + +1.0 312,981 + +1.8 313,003 + +0.5 313,115 + +2.1 313,116 - +0.5 313,196 - -1.8 313,204 - -0.3 313,256 - EX31_RS01405 0.14 +0.8 313,282 - EX31_RS01405 0.21 -0.0 313,296 + EX31_RS01405 0.24 -1.0 313,296 + EX31_RS01405 0.24 -3.3 313,334 + EX31_RS01405 0.34 +0.4 313,371 - EX31_RS01405 0.43 +0.7 313,371 - EX31_RS01405 0.43 +1.5 313,373 + EX31_RS01405 0.43 -1.6 313,373 + EX31_RS01405 0.43 +0.3 313,374 - EX31_RS01405 0.43 +0.8 313,433 - EX31_RS01405 0.58 +1.1 313,445 + EX31_RS01405 0.61 +0.1 313,545 + EX31_RS01405 0.85 -1.6 313,546 - EX31_RS01405 0.86 -0.0 313,546 - EX31_RS01405 0.86 +1.8 313,571 - -1.4 313,710 + +1.2 313,733 - +1.5 313,798 + -0.0 313,798 + -1.8 313,799 - +0.5 313,799 - -2.5 313,799 - -0.1 313,799 - +0.1 313,799 - +0.9 313,799 - +0.4 313,799 - +1.4 313,799 - -1.0 313,917 + -0.0 313,970 - EX31_RS01410 0.12 +0.5 314,198 + EX31_RS01410 0.28 +1.0 314,198 + EX31_RS01410 0.28 +0.3 314,198 + EX31_RS01410 0.28 -1.7 314,198 + EX31_RS01410 0.28 -1.4 314,199 - EX31_RS01410 0.29 +0.2 314,199 - EX31_RS01410 0.29 -0.0 314,199 - EX31_RS01410 0.29 +1.0 314,199 - EX31_RS01410 0.29 +1.8 314,199 - EX31_RS01410 0.29 +2.1 314,199 - EX31_RS01410 0.29 -1.6 314,290 + EX31_RS01410 0.35 +1.8 314,290 + EX31_RS01410 0.35 +1.2 314,291 - EX31_RS01410 0.35 +0.4 314,532 + EX31_RS01410 0.53 -1.4 314,532 + EX31_RS01410 0.53 -1.2 314,532 + EX31_RS01410 0.53 -1.4 314,532 + EX31_RS01410 0.53 +1.3 314,534 + EX31_RS01410 0.53 -1.4 314,535 - EX31_RS01410 0.53 +1.0
Or see this region's nucleotide sequence