Strain Fitness in Rahnella sp. WP5 around EX31_RS00185

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00180 and EX31_RS00185 are separated by 100 nucleotidesEX31_RS00185 and EX31_RS00190 are separated by 535 nucleotides EX31_RS00180: EX31_RS00180 - aldehyde dehydrogenase family protein, at 38,096 to 39,481 _RS00180 EX31_RS00185: EX31_RS00185 - LysR family transcriptional regulator, at 39,582 to 40,466 _RS00185 EX31_RS00190: EX31_RS00190 - H-NS histone family protein, at 41,002 to 41,409 _RS00190 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 38.665 kb on + strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.696 kb on - strand, within EX31_RS00180at 38.761 kb on + strand, within EX31_RS00180at 38.761 kb on + strand, within EX31_RS00180at 38.762 kb on - strand, within EX31_RS00180at 38.762 kb on - strand, within EX31_RS00180at 38.917 kb on + strand, within EX31_RS00180at 39.007 kb on + strand, within EX31_RS00180at 39.007 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.019 kb on + strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.020 kb on - strand, within EX31_RS00180at 39.086 kb on - strand, within EX31_RS00180at 39.122 kb on - strand, within EX31_RS00180at 39.122 kb on - strand, within EX31_RS00180at 39.122 kb on - strand, within EX31_RS00180at 39.187 kb on - strand, within EX31_RS00180at 39.245 kb on - strand, within EX31_RS00180at 39.275 kb on - strand, within EX31_RS00180at 39.275 kb on - strand, within EX31_RS00180at 39.275 kb on - strand, within EX31_RS00180at 39.310 kb on + strand, within EX31_RS00180at 39.358 kb on + strandat 39.358 kb on + strandat 39.361 kb on - strandat 39.361 kb on - strandat 39.482 kb on + strandat 39.482 kb on + strandat 39.482 kb on + strandat 39.483 kb on - strandat 39.483 kb on - strandat 39.483 kb on - strandat 39.483 kb on - strandat 39.497 kb on + strandat 39.497 kb on + strandat 39.516 kb on - strandat 39.555 kb on + strandat 39.556 kb on - strandat 39.632 kb on + strandat 39.689 kb on + strand, within EX31_RS00185at 39.721 kb on + strand, within EX31_RS00185at 39.721 kb on + strand, within EX31_RS00185at 39.780 kb on + strand, within EX31_RS00185at 39.781 kb on - strand, within EX31_RS00185at 39.781 kb on - strand, within EX31_RS00185at 39.977 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.056 kb on + strand, within EX31_RS00185at 40.058 kb on + strand, within EX31_RS00185at 40.087 kb on + strand, within EX31_RS00185at 40.087 kb on + strand, within EX31_RS00185at 40.087 kb on + strand, within EX31_RS00185at 40.137 kb on + strand, within EX31_RS00185at 40.233 kb on + strand, within EX31_RS00185at 40.233 kb on + strand, within EX31_RS00185at 40.233 kb on + strand, within EX31_RS00185at 40.292 kb on + strand, within EX31_RS00185at 40.292 kb on + strand, within EX31_RS00185at 40.292 kb on + strand, within EX31_RS00185at 40.292 kb on + strand, within EX31_RS00185at 40.305 kb on - strand, within EX31_RS00185at 40.351 kb on - strand, within EX31_RS00185at 40.351 kb on - strand, within EX31_RS00185at 40.539 kb on - strandat 40.539 kb on - strandat 40.542 kb on + strandat 40.543 kb on - strandat 40.662 kb on - strandat 40.667 kb on + strandat 40.667 kb on + strandat 40.668 kb on - strandat 40.712 kb on - strandat 40.715 kb on + strandat 40.716 kb on - strandat 40.718 kb on + strandat 40.725 kb on + strandat 40.726 kb on + strandat 40.726 kb on + strandat 40.726 kb on + strandat 40.726 kb on + strandat 40.726 kb on + strandat 40.727 kb on - strandat 40.751 kb on + strandat 40.752 kb on - strandat 40.754 kb on - strandat 40.754 kb on - strandat 40.774 kb on + strandat 40.848 kb on + strandat 40.852 kb on + strandat 40.858 kb on + strandat 40.903 kb on - strandat 40.903 kb on - strandat 40.906 kb on - strandat 40.912 kb on + strandat 40.913 kb on - strandat 40.913 kb on - strandat 40.915 kb on + strandat 40.915 kb on + strandat 40.935 kb on + strandat 40.935 kb on + strandat 40.983 kb on + strandat 40.983 kb on + strandat 40.983 kb on + strandat 40.983 kb on + strandat 41.015 kb on + strandat 41.037 kb on + strandat 41.038 kb on - strandat 41.256 kb on + strand, within EX31_RS00190at 41.293 kb on + strand, within EX31_RS00190at 41.293 kb on + strand, within EX31_RS00190at 41.293 kb on + strand, within EX31_RS00190at 41.293 kb on + strand, within EX31_RS00190at 41.356 kb on - strand, within EX31_RS00190at 41.379 kb on + strandat 41.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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38,665 + EX31_RS00180 0.41 -0.0
38,666 - EX31_RS00180 0.41 +1.1
38,666 - EX31_RS00180 0.41 +0.2
38,666 - EX31_RS00180 0.41 +0.1
38,666 - EX31_RS00180 0.41 -0.1
38,696 - EX31_RS00180 0.43 +1.8
38,761 + EX31_RS00180 0.48 -1.4
38,761 + EX31_RS00180 0.48 +1.7
38,762 - EX31_RS00180 0.48 -0.2
38,762 - EX31_RS00180 0.48 -0.1
38,917 + EX31_RS00180 0.59 -0.7
39,007 + EX31_RS00180 0.66 -0.8
39,007 + EX31_RS00180 0.66 +0.8
39,019 + EX31_RS00180 0.67 +0.6
39,019 + EX31_RS00180 0.67 +0.4
39,019 + EX31_RS00180 0.67 +0.1
39,019 + EX31_RS00180 0.67 +0.8
39,019 + EX31_RS00180 0.67 +0.3
39,020 - EX31_RS00180 0.67 +2.4
39,020 - EX31_RS00180 0.67 -0.5
39,020 - EX31_RS00180 0.67 +1.2
39,020 - EX31_RS00180 0.67 +1.8
39,020 - EX31_RS00180 0.67 -0.1
39,086 - EX31_RS00180 0.71 +0.4
39,122 - EX31_RS00180 0.74 -0.9
39,122 - EX31_RS00180 0.74 +0.3
39,122 - EX31_RS00180 0.74 +0.6
39,187 - EX31_RS00180 0.79 +1.2
39,245 - EX31_RS00180 0.83 +0.3
39,275 - EX31_RS00180 0.85 +0.4
39,275 - EX31_RS00180 0.85 +1.4
39,275 - EX31_RS00180 0.85 -0.3
39,310 + EX31_RS00180 0.88 +0.1
39,358 + +1.4
39,358 + +1.1
39,361 - +0.1
39,361 - +0.3
39,482 + +0.4
39,482 + +1.9
39,482 + +0.9
39,483 - -2.6
39,483 - -1.7
39,483 - -0.3
39,483 - -2.5
39,497 + -0.2
39,497 + +1.1
39,516 - +2.7
39,555 + +1.3
39,556 - +1.4
39,632 + -1.5
39,689 + EX31_RS00185 0.12 +0.1
39,721 + EX31_RS00185 0.16 +0.5
39,721 + EX31_RS00185 0.16 +0.9
39,780 + EX31_RS00185 0.22 +1.2
39,781 - EX31_RS00185 0.22 +1.1
39,781 - EX31_RS00185 0.22 -0.1
39,977 + EX31_RS00185 0.45 +0.8
40,056 + EX31_RS00185 0.54 -1.7
40,056 + EX31_RS00185 0.54 +1.7
40,056 + EX31_RS00185 0.54 +2.1
40,056 + EX31_RS00185 0.54 +0.8
40,056 + EX31_RS00185 0.54 -2.0
40,056 + EX31_RS00185 0.54 +0.7
40,056 + EX31_RS00185 0.54 +0.5
40,058 + EX31_RS00185 0.54 -0.1
40,087 + EX31_RS00185 0.57 -0.3
40,087 + EX31_RS00185 0.57 +1.7
40,087 + EX31_RS00185 0.57 -1.2
40,137 + EX31_RS00185 0.63 -0.3
40,233 + EX31_RS00185 0.74 -2.8
40,233 + EX31_RS00185 0.74 +0.8
40,233 + EX31_RS00185 0.74 +0.5
40,292 + EX31_RS00185 0.80 +0.5
40,292 + EX31_RS00185 0.80 -0.1
40,292 + EX31_RS00185 0.80 +0.5
40,292 + EX31_RS00185 0.80 +2.5
40,305 - EX31_RS00185 0.82 -0.4
40,351 - EX31_RS00185 0.87 +1.7
40,351 - EX31_RS00185 0.87 -1.2
40,539 - +1.1
40,539 - +0.1
40,542 + -1.2
40,543 - -0.2
40,662 - +1.5
40,667 + -0.7
40,667 + +1.4
40,668 - +2.1
40,712 - +0.1
40,715 + +0.1
40,716 - -0.7
40,718 + -2.3
40,725 + -0.5
40,726 + +0.3
40,726 + +1.1
40,726 + -1.5
40,726 + +0.4
40,726 + -0.9
40,727 - +0.1
40,751 + -0.9
40,752 - -0.9
40,754 - +0.7
40,754 - -1.5
40,774 + +0.1
40,848 + -0.5
40,852 + -0.1
40,858 + +1.3
40,903 - +0.9
40,903 - -0.9
40,906 - -1.2
40,912 + -1.7
40,913 - -1.2
40,913 - -1.8
40,915 + +1.3
40,915 + -1.7
40,935 + -2.4
40,935 + +0.0
40,983 + -0.8
40,983 + +3.7
40,983 + -0.5
40,983 + -0.9
41,015 + +1.5
41,037 + +0.5
41,038 - -0.9
41,256 + EX31_RS00190 0.62 +0.1
41,293 + EX31_RS00190 0.71 +0.7
41,293 + EX31_RS00190 0.71 -0.9
41,293 + EX31_RS00190 0.71 +0.1
41,293 + EX31_RS00190 0.71 +0.7
41,356 - EX31_RS00190 0.87 +1.4
41,379 + -0.1
41,379 + +1.1

Or see this region's nucleotide sequence