Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23835 and CA265_RS23840 are separated by 121 nucleotides CA265_RS23840 and CA265_RS23845 are separated by 1 nucleotides CA265_RS23845 and CA265_RS23850 are separated by 7 nucleotides CA265_RS23850 and CA265_RS23855 are separated by 244 nucleotides
CA265_RS23835: CA265_RS23835 - hypothetical protein, at 5,817,298 to 5,817,738
_RS23835
CA265_RS23840: CA265_RS23840 - S1/P1 Nuclease, at 5,817,860 to 5,818,666
_RS23840
CA265_RS23845: CA265_RS23845 - fumarate hydratase, at 5,818,668 to 5,819,183
_RS23845
CA265_RS23850: CA265_RS23850 - hypothetical protein, at 5,819,191 to 5,819,427
_RS23850
CA265_RS23855: CA265_RS23855 - fumarate hydratase, class II, at 5,819,672 to 5,821,069
_RS23855
Position (kb)
5818
5819
5820 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5817.745 kb on - strand at 5817.763 kb on + strand at 5817.788 kb on - strand at 5817.796 kb on - strand at 5817.844 kb on + strand at 5817.847 kb on - strand at 5817.867 kb on + strand at 5817.867 kb on + strand at 5817.911 kb on + strand at 5817.954 kb on + strand, within CA265_RS23840 at 5817.960 kb on - strand, within CA265_RS23840 at 5817.960 kb on - strand, within CA265_RS23840 at 5817.965 kb on - strand, within CA265_RS23840 at 5817.965 kb on - strand, within CA265_RS23840 at 5818.009 kb on - strand, within CA265_RS23840 at 5818.039 kb on + strand, within CA265_RS23840 at 5818.051 kb on + strand, within CA265_RS23840 at 5818.055 kb on + strand, within CA265_RS23840 at 5818.101 kb on + strand, within CA265_RS23840 at 5818.232 kb on + strand, within CA265_RS23840 at 5818.233 kb on - strand, within CA265_RS23840 at 5818.289 kb on - strand, within CA265_RS23840 at 5818.317 kb on - strand, within CA265_RS23840 at 5818.371 kb on + strand, within CA265_RS23840 at 5818.373 kb on + strand, within CA265_RS23840 at 5818.427 kb on - strand, within CA265_RS23840 at 5818.438 kb on + strand, within CA265_RS23840 at 5818.496 kb on + strand, within CA265_RS23840 at 5818.496 kb on + strand, within CA265_RS23840 at 5818.533 kb on - strand, within CA265_RS23840 at 5818.559 kb on + strand, within CA265_RS23840 at 5818.559 kb on + strand, within CA265_RS23840 at 5818.560 kb on - strand, within CA265_RS23840 at 5818.562 kb on - strand, within CA265_RS23840 at 5818.562 kb on - strand, within CA265_RS23840 at 5818.602 kb on - strand at 5818.605 kb on + strand at 5818.605 kb on + strand at 5818.606 kb on - strand at 5818.606 kb on - strand at 5818.606 kb on - strand at 5818.606 kb on - strand at 5818.649 kb on - strand at 5818.669 kb on + strand at 5818.802 kb on + strand, within CA265_RS23845 at 5818.802 kb on + strand, within CA265_RS23845 at 5818.831 kb on + strand, within CA265_RS23845 at 5818.831 kb on + strand, within CA265_RS23845 at 5818.864 kb on - strand, within CA265_RS23845 at 5818.881 kb on + strand, within CA265_RS23845 at 5818.885 kb on + strand, within CA265_RS23845 at 5818.900 kb on + strand, within CA265_RS23845 at 5818.967 kb on + strand, within CA265_RS23845 at 5819.015 kb on - strand, within CA265_RS23845 at 5819.069 kb on + strand, within CA265_RS23845 at 5819.091 kb on + strand, within CA265_RS23845 at 5819.093 kb on + strand, within CA265_RS23845 at 5819.115 kb on + strand, within CA265_RS23845 at 5819.116 kb on - strand, within CA265_RS23845 at 5819.136 kb on - strand at 5819.149 kb on + strand at 5819.229 kb on + strand, within CA265_RS23850 at 5819.230 kb on - strand, within CA265_RS23850 at 5819.261 kb on - strand, within CA265_RS23850 at 5819.305 kb on - strand, within CA265_RS23850 at 5819.305 kb on - strand, within CA265_RS23850 at 5819.325 kb on + strand, within CA265_RS23850 at 5819.377 kb on + strand, within CA265_RS23850 at 5819.377 kb on + strand, within CA265_RS23850 at 5819.378 kb on - strand, within CA265_RS23850 at 5819.378 kb on - strand, within CA265_RS23850 at 5819.378 kb on - strand, within CA265_RS23850 at 5819.421 kb on + strand at 5819.487 kb on + strand at 5819.487 kb on + strand at 5819.531 kb on - strand at 5819.531 kb on - strand at 5819.545 kb on - strand at 5819.575 kb on - strand at 5819.620 kb on + strand at 5819.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,817,745 - +0.0 5,817,763 + -0.0 5,817,788 - +0.6 5,817,796 - -1.0 5,817,844 + -0.8 5,817,847 - +0.3 5,817,867 + -0.1 5,817,867 + -0.0 5,817,911 + -0.5 5,817,954 + CA265_RS23840 0.12 +0.9 5,817,960 - CA265_RS23840 0.12 +0.5 5,817,960 - CA265_RS23840 0.12 -0.4 5,817,965 - CA265_RS23840 0.13 -0.1 5,817,965 - CA265_RS23840 0.13 +0.2 5,818,009 - CA265_RS23840 0.18 -0.7 5,818,039 + CA265_RS23840 0.22 -1.4 5,818,051 + CA265_RS23840 0.24 -1.5 5,818,055 + CA265_RS23840 0.24 -0.2 5,818,101 + CA265_RS23840 0.30 -1.0 5,818,232 + CA265_RS23840 0.46 -1.4 5,818,233 - CA265_RS23840 0.46 -0.0 5,818,289 - CA265_RS23840 0.53 -0.5 5,818,317 - CA265_RS23840 0.57 +0.2 5,818,371 + CA265_RS23840 0.63 +0.2 5,818,373 + CA265_RS23840 0.64 +0.0 5,818,427 - CA265_RS23840 0.70 -0.8 5,818,438 + CA265_RS23840 0.72 -2.6 5,818,496 + CA265_RS23840 0.79 -0.6 5,818,496 + CA265_RS23840 0.79 +0.5 5,818,533 - CA265_RS23840 0.83 -1.0 5,818,559 + CA265_RS23840 0.87 +0.5 5,818,559 + CA265_RS23840 0.87 +0.2 5,818,560 - CA265_RS23840 0.87 -0.5 5,818,562 - CA265_RS23840 0.87 -0.1 5,818,562 - CA265_RS23840 0.87 -0.1 5,818,602 - +0.3 5,818,605 + -0.4 5,818,605 + -0.4 5,818,606 - -0.8 5,818,606 - -1.0 5,818,606 - +0.2 5,818,606 - -0.5 5,818,649 - -1.6 5,818,669 + +0.9 5,818,802 + CA265_RS23845 0.26 +1.0 5,818,802 + CA265_RS23845 0.26 +0.4 5,818,831 + CA265_RS23845 0.32 +1.6 5,818,831 + CA265_RS23845 0.32 +0.5 5,818,864 - CA265_RS23845 0.38 +1.3 5,818,881 + CA265_RS23845 0.41 +0.1 5,818,885 + CA265_RS23845 0.42 -0.8 5,818,900 + CA265_RS23845 0.45 +0.5 5,818,967 + CA265_RS23845 0.58 +2.4 5,819,015 - CA265_RS23845 0.67 -0.1 5,819,069 + CA265_RS23845 0.78 +0.5 5,819,091 + CA265_RS23845 0.82 +0.7 5,819,093 + CA265_RS23845 0.82 +0.2 5,819,115 + CA265_RS23845 0.87 +1.1 5,819,116 - CA265_RS23845 0.87 -0.0 5,819,136 - +1.1 5,819,149 + -0.0 5,819,229 + CA265_RS23850 0.16 +0.1 5,819,230 - CA265_RS23850 0.16 +0.4 5,819,261 - CA265_RS23850 0.30 +0.8 5,819,305 - CA265_RS23850 0.48 -0.5 5,819,305 - CA265_RS23850 0.48 +0.4 5,819,325 + CA265_RS23850 0.57 -0.6 5,819,377 + CA265_RS23850 0.78 -1.5 5,819,377 + CA265_RS23850 0.78 -0.6 5,819,378 - CA265_RS23850 0.79 +0.5 5,819,378 - CA265_RS23850 0.79 +0.5 5,819,378 - CA265_RS23850 0.79 +0.6 5,819,421 + +0.3 5,819,487 + +0.6 5,819,487 + -2.5 5,819,531 - +0.7 5,819,531 - -0.4 5,819,545 - -0.1 5,819,575 - +0.9 5,819,620 + +0.3 5,819,620 + -0.1
Or see this region's nucleotide sequence