Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23505 and CA265_RS23510 are separated by 19 nucleotides CA265_RS23510 and CA265_RS23515 are separated by 6 nucleotides CA265_RS23515 and CA265_RS23520 are separated by 3 nucleotides CA265_RS23520 and CA265_RS23525 are separated by 79 nucleotides
CA265_RS23505: CA265_RS23505 - biopolymer transporter ExbD, at 5,749,150 to 5,749,656
_RS23505
CA265_RS23510: CA265_RS23510 - energy transducer TonB, at 5,749,676 to 5,750,494
_RS23510
CA265_RS23515: CA265_RS23515 - hypothetical protein, at 5,750,501 to 5,750,728
_RS23515
CA265_RS23520: CA265_RS23520 - phosphate ABC transporter substrate-binding protein, at 5,750,732 to 5,751,634
_RS23520
CA265_RS23525: CA265_RS23525 - hypothetical protein, at 5,751,714 to 5,753,429
_RS23525
Position (kb) 5750
5751 Strain fitness (log2 ratio) -1
0
1
2 at 5749.530 kb on + strand, within CA265_RS23505 at 5749.551 kb on + strand, within CA265_RS23505 at 5749.617 kb on + strand at 5749.661 kb on + strand at 5749.671 kb on + strand at 5749.690 kb on + strand at 5749.762 kb on + strand at 5749.795 kb on - strand, within CA265_RS23510 at 5749.798 kb on + strand, within CA265_RS23510 at 5749.818 kb on + strand, within CA265_RS23510 at 5749.933 kb on + strand, within CA265_RS23510 at 5750.231 kb on - strand, within CA265_RS23510 at 5750.247 kb on + strand, within CA265_RS23510 at 5750.252 kb on - strand, within CA265_RS23510 at 5750.260 kb on + strand, within CA265_RS23510 at 5750.299 kb on + strand, within CA265_RS23510 at 5750.482 kb on + strand at 5750.492 kb on + strand at 5750.492 kb on + strand at 5750.498 kb on + strand at 5750.515 kb on + strand at 5750.515 kb on + strand at 5750.583 kb on - strand, within CA265_RS23515 at 5750.605 kb on + strand, within CA265_RS23515 at 5750.684 kb on - strand, within CA265_RS23515 at 5750.684 kb on - strand, within CA265_RS23515 at 5750.698 kb on - strand, within CA265_RS23515 at 5750.706 kb on + strand at 5750.828 kb on - strand, within CA265_RS23520 at 5750.833 kb on + strand, within CA265_RS23520 at 5750.834 kb on - strand, within CA265_RS23520 at 5750.834 kb on - strand, within CA265_RS23520 at 5750.834 kb on - strand, within CA265_RS23520 at 5750.834 kb on - strand, within CA265_RS23520 at 5750.949 kb on + strand, within CA265_RS23520 at 5750.997 kb on + strand, within CA265_RS23520 at 5751.037 kb on + strand, within CA265_RS23520 at 5751.067 kb on - strand, within CA265_RS23520 at 5751.082 kb on - strand, within CA265_RS23520 at 5751.109 kb on + strand, within CA265_RS23520 at 5751.110 kb on - strand, within CA265_RS23520 at 5751.136 kb on + strand, within CA265_RS23520 at 5751.137 kb on - strand, within CA265_RS23520 at 5751.138 kb on + strand, within CA265_RS23520 at 5751.139 kb on - strand, within CA265_RS23520 at 5751.141 kb on + strand, within CA265_RS23520 at 5751.185 kb on + strand, within CA265_RS23520 at 5751.313 kb on + strand, within CA265_RS23520 at 5751.363 kb on - strand, within CA265_RS23520 at 5751.411 kb on + strand, within CA265_RS23520 at 5751.412 kb on - strand, within CA265_RS23520 at 5751.426 kb on - strand, within CA265_RS23520 at 5751.426 kb on - strand at 5751.451 kb on - strand, within CA265_RS23520 at 5751.483 kb on + strand, within CA265_RS23520 at 5751.484 kb on - strand, within CA265_RS23520 at 5751.484 kb on - strand, within CA265_RS23520 at 5751.541 kb on - strand, within CA265_RS23520
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,749,530 + CA265_RS23505 0.75 +1.8 5,749,551 + CA265_RS23505 0.79 +0.8 5,749,617 + +1.4 5,749,661 + +1.6 5,749,671 + +1.6 5,749,690 + +1.1 5,749,762 + +0.6 5,749,795 - CA265_RS23510 0.15 -0.6 5,749,798 + CA265_RS23510 0.15 +1.4 5,749,818 + CA265_RS23510 0.17 +1.6 5,749,933 + CA265_RS23510 0.31 +1.3 5,750,231 - CA265_RS23510 0.68 +2.5 5,750,247 + CA265_RS23510 0.70 +1.4 5,750,252 - CA265_RS23510 0.70 +0.7 5,750,260 + CA265_RS23510 0.71 +1.4 5,750,299 + CA265_RS23510 0.76 +1.2 5,750,482 + +2.3 5,750,492 + +0.4 5,750,492 + +1.6 5,750,498 + +1.0 5,750,515 + -1.3 5,750,515 + +1.7 5,750,583 - CA265_RS23515 0.36 +0.6 5,750,605 + CA265_RS23515 0.46 +1.4 5,750,684 - CA265_RS23515 0.80 +1.5 5,750,684 - CA265_RS23515 0.80 +1.0 5,750,698 - CA265_RS23515 0.86 +2.0 5,750,706 + +0.4 5,750,828 - CA265_RS23520 0.11 +1.7 5,750,833 + CA265_RS23520 0.11 +1.8 5,750,834 - CA265_RS23520 0.11 +1.8 5,750,834 - CA265_RS23520 0.11 +1.2 5,750,834 - CA265_RS23520 0.11 +0.8 5,750,834 - CA265_RS23520 0.11 +1.4 5,750,949 + CA265_RS23520 0.24 +1.2 5,750,997 + CA265_RS23520 0.29 -0.3 5,751,037 + CA265_RS23520 0.34 +1.2 5,751,067 - CA265_RS23520 0.37 +1.2 5,751,082 - CA265_RS23520 0.39 +1.6 5,751,109 + CA265_RS23520 0.42 +0.2 5,751,110 - CA265_RS23520 0.42 +1.4 5,751,136 + CA265_RS23520 0.45 +1.5 5,751,137 - CA265_RS23520 0.45 +0.9 5,751,138 + CA265_RS23520 0.45 +0.4 5,751,139 - CA265_RS23520 0.45 +0.7 5,751,141 + CA265_RS23520 0.45 +0.5 5,751,185 + CA265_RS23520 0.50 +1.4 5,751,313 + CA265_RS23520 0.64 +1.8 5,751,363 - CA265_RS23520 0.70 +1.4 5,751,411 + CA265_RS23520 0.75 +1.1 5,751,412 - CA265_RS23520 0.75 +1.5 5,751,426 - CA265_RS23520 0.77 +2.1 5,751,426 - +2.4 5,751,451 - CA265_RS23520 0.80 +1.1 5,751,483 + CA265_RS23520 0.83 +0.8 5,751,484 - CA265_RS23520 0.83 +1.9 5,751,484 - CA265_RS23520 0.83 +1.4 5,751,541 - CA265_RS23520 0.90 +1.3
Or see this region's nucleotide sequence