Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21040 and CA265_RS21045 are separated by 169 nucleotides CA265_RS21045 and CA265_RS21050 overlap by 1 nucleotides CA265_RS21050 and CA265_RS21055 are separated by 95 nucleotides
CA265_RS21040: CA265_RS21040 - hypothetical protein, at 5,182,560 to 5,184,047
_RS21040
CA265_RS21045: CA265_RS21045 - hypothetical protein, at 5,184,217 to 5,184,960
_RS21045
CA265_RS21050: CA265_RS21050 - Nif3-like dinuclear metal center hexameric protein, at 5,184,960 to 5,186,057
_RS21050
CA265_RS21055: CA265_RS21055 - hypothetical protein, at 5,186,153 to 5,187,472
_RS21055
Position (kb)
5184
5185
5186
5187 Strain fitness (log2 ratio)
-2
-1
0
1 at 5183.989 kb on - strand at 5184.055 kb on + strand at 5184.057 kb on + strand at 5184.057 kb on + strand at 5184.058 kb on - strand at 5184.058 kb on - strand at 5184.058 kb on - strand at 5184.101 kb on - strand at 5184.112 kb on + strand at 5184.112 kb on + strand at 5184.113 kb on - strand at 5184.118 kb on - strand at 5184.198 kb on - strand at 5185.129 kb on + strand, within CA265_RS21050 at 5185.130 kb on - strand, within CA265_RS21050 at 5185.233 kb on - strand, within CA265_RS21050 at 5185.233 kb on - strand, within CA265_RS21050 at 5185.281 kb on + strand, within CA265_RS21050 at 5185.281 kb on + strand, within CA265_RS21050 at 5185.311 kb on - strand, within CA265_RS21050 at 5185.315 kb on + strand, within CA265_RS21050 at 5185.377 kb on - strand, within CA265_RS21050 at 5185.381 kb on + strand, within CA265_RS21050 at 5185.396 kb on + strand, within CA265_RS21050 at 5185.574 kb on - strand, within CA265_RS21050 at 5185.574 kb on - strand, within CA265_RS21050 at 5185.646 kb on - strand, within CA265_RS21050 at 5185.650 kb on - strand, within CA265_RS21050 at 5185.782 kb on - strand, within CA265_RS21050 at 5185.785 kb on - strand, within CA265_RS21050 at 5185.819 kb on + strand, within CA265_RS21050 at 5185.871 kb on + strand, within CA265_RS21050 at 5185.872 kb on - strand, within CA265_RS21050 at 5185.908 kb on + strand, within CA265_RS21050 at 5185.909 kb on - strand, within CA265_RS21050 at 5186.009 kb on + strand at 5186.009 kb on + strand at 5186.010 kb on - strand at 5186.041 kb on - strand at 5186.041 kb on - strand at 5186.050 kb on - strand at 5186.092 kb on + strand at 5186.098 kb on + strand at 5186.117 kb on - strand at 5186.117 kb on - strand at 5186.137 kb on + strand at 5186.155 kb on - strand at 5186.201 kb on + strand at 5186.290 kb on + strand, within CA265_RS21055 at 5186.290 kb on + strand, within CA265_RS21055 at 5186.291 kb on - strand, within CA265_RS21055 at 5186.292 kb on + strand, within CA265_RS21055 at 5186.445 kb on - strand, within CA265_RS21055 at 5186.463 kb on - strand, within CA265_RS21055 at 5186.463 kb on - strand, within CA265_RS21055 at 5186.504 kb on + strand, within CA265_RS21055 at 5186.505 kb on - strand, within CA265_RS21055 at 5186.508 kb on - strand, within CA265_RS21055 at 5186.564 kb on + strand, within CA265_RS21055 at 5186.564 kb on + strand, within CA265_RS21055 at 5186.565 kb on - strand, within CA265_RS21055 at 5186.569 kb on - strand, within CA265_RS21055 at 5186.632 kb on + strand, within CA265_RS21055 at 5186.633 kb on - strand, within CA265_RS21055 at 5186.765 kb on + strand, within CA265_RS21055 at 5186.863 kb on + strand, within CA265_RS21055 at 5186.880 kb on + strand, within CA265_RS21055 at 5186.918 kb on + strand, within CA265_RS21055 at 5186.919 kb on - strand, within CA265_RS21055 at 5186.944 kb on + strand, within CA265_RS21055 at 5186.960 kb on - strand, within CA265_RS21055 at 5186.969 kb on - strand, within CA265_RS21055 at 5187.013 kb on + strand, within CA265_RS21055 at 5187.014 kb on - strand, within CA265_RS21055 at 5187.015 kb on + strand, within CA265_RS21055 at 5187.015 kb on + strand, within CA265_RS21055 at 5187.020 kb on - strand, within CA265_RS21055
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,183,989 - -0.8 5,184,055 + +1.7 5,184,057 + -1.0 5,184,057 + -0.9 5,184,058 - -2.4 5,184,058 - -2.4 5,184,058 - -2.1 5,184,101 - -0.4 5,184,112 + -1.2 5,184,112 + +0.5 5,184,113 - +0.7 5,184,118 - +1.3 5,184,198 - +1.0 5,185,129 + CA265_RS21050 0.15 -0.3 5,185,130 - CA265_RS21050 0.15 +0.3 5,185,233 - CA265_RS21050 0.25 -0.9 5,185,233 - CA265_RS21050 0.25 -1.9 5,185,281 + CA265_RS21050 0.29 +0.4 5,185,281 + CA265_RS21050 0.29 +0.3 5,185,311 - CA265_RS21050 0.32 -1.8 5,185,315 + CA265_RS21050 0.32 -0.3 5,185,377 - CA265_RS21050 0.38 -0.7 5,185,381 + CA265_RS21050 0.38 +0.1 5,185,396 + CA265_RS21050 0.40 -1.7 5,185,574 - CA265_RS21050 0.56 -1.3 5,185,574 - CA265_RS21050 0.56 -1.9 5,185,646 - CA265_RS21050 0.62 -0.5 5,185,650 - CA265_RS21050 0.63 -1.5 5,185,782 - CA265_RS21050 0.75 -0.2 5,185,785 - CA265_RS21050 0.75 -0.0 5,185,819 + CA265_RS21050 0.78 -0.1 5,185,871 + CA265_RS21050 0.83 -1.5 5,185,872 - CA265_RS21050 0.83 +0.0 5,185,908 + CA265_RS21050 0.86 -0.5 5,185,909 - CA265_RS21050 0.86 -0.5 5,186,009 + -0.4 5,186,009 + +1.1 5,186,010 - -0.5 5,186,041 - -1.5 5,186,041 - -0.8 5,186,050 - -1.7 5,186,092 + -0.6 5,186,098 + -0.2 5,186,117 - +0.2 5,186,117 - -1.9 5,186,137 + -0.3 5,186,155 - +0.5 5,186,201 + +0.5 5,186,290 + CA265_RS21055 0.10 +0.5 5,186,290 + CA265_RS21055 0.10 +0.3 5,186,291 - CA265_RS21055 0.10 +1.0 5,186,292 + CA265_RS21055 0.11 +0.4 5,186,445 - CA265_RS21055 0.22 -0.9 5,186,463 - CA265_RS21055 0.23 -0.2 5,186,463 - CA265_RS21055 0.23 +0.5 5,186,504 + CA265_RS21055 0.27 +1.2 5,186,505 - CA265_RS21055 0.27 -0.2 5,186,508 - CA265_RS21055 0.27 +0.7 5,186,564 + CA265_RS21055 0.31 +0.7 5,186,564 + CA265_RS21055 0.31 +0.2 5,186,565 - CA265_RS21055 0.31 +1.0 5,186,569 - CA265_RS21055 0.32 -1.9 5,186,632 + CA265_RS21055 0.36 +0.3 5,186,633 - CA265_RS21055 0.36 +0.6 5,186,765 + CA265_RS21055 0.46 -0.4 5,186,863 + CA265_RS21055 0.54 +0.5 5,186,880 + CA265_RS21055 0.55 +0.2 5,186,918 + CA265_RS21055 0.58 +1.2 5,186,919 - CA265_RS21055 0.58 +0.9 5,186,944 + CA265_RS21055 0.60 -0.5 5,186,960 - CA265_RS21055 0.61 -0.2 5,186,969 - CA265_RS21055 0.62 -0.7 5,187,013 + CA265_RS21055 0.65 -0.6 5,187,014 - CA265_RS21055 0.65 -0.1 5,187,015 + CA265_RS21055 0.65 +0.2 5,187,015 + CA265_RS21055 0.65 -0.8 5,187,020 - CA265_RS21055 0.66 +0.0
Or see this region's nucleotide sequence