Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17530 and CA265_RS17535 are separated by 234 nucleotides CA265_RS17535 and CA265_RS17540 are separated by 170 nucleotides
CA265_RS17530: CA265_RS17530 - 2-oxoglutarate dehydrogenase E1 component, at 4,368,297 to 4,371,092
_RS17530
CA265_RS17535: CA265_RS17535 - deoxyribodipyrimidine photolyase, at 4,371,327 to 4,372,601
_RS17535
CA265_RS17540: CA265_RS17540 - TIGR01777 family protein, at 4,372,772 to 4,373,674
_RS17540
Position (kb)
4371
4372
4373 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4371.110 kb on - strand at 4371.211 kb on + strand at 4371.329 kb on - strand at 4371.349 kb on + strand at 4371.432 kb on + strand at 4371.433 kb on - strand at 4371.433 kb on - strand at 4371.516 kb on + strand, within CA265_RS17535 at 4371.516 kb on + strand, within CA265_RS17535 at 4371.539 kb on - strand, within CA265_RS17535 at 4371.610 kb on - strand, within CA265_RS17535 at 4371.653 kb on + strand, within CA265_RS17535 at 4371.670 kb on - strand, within CA265_RS17535 at 4371.716 kb on + strand, within CA265_RS17535 at 4371.771 kb on + strand, within CA265_RS17535 at 4371.927 kb on + strand, within CA265_RS17535 at 4371.928 kb on - strand, within CA265_RS17535 at 4372.131 kb on - strand, within CA265_RS17535 at 4372.187 kb on + strand, within CA265_RS17535 at 4372.187 kb on + strand, within CA265_RS17535 at 4372.188 kb on - strand, within CA265_RS17535 at 4372.189 kb on + strand, within CA265_RS17535 at 4372.190 kb on - strand, within CA265_RS17535 at 4372.191 kb on + strand, within CA265_RS17535 at 4372.196 kb on + strand, within CA265_RS17535 at 4372.297 kb on + strand, within CA265_RS17535 at 4372.315 kb on + strand, within CA265_RS17535 at 4372.316 kb on - strand, within CA265_RS17535 at 4372.337 kb on + strand, within CA265_RS17535 at 4372.340 kb on + strand, within CA265_RS17535 at 4372.341 kb on - strand, within CA265_RS17535 at 4372.424 kb on + strand, within CA265_RS17535 at 4372.437 kb on - strand, within CA265_RS17535 at 4372.442 kb on + strand, within CA265_RS17535 at 4372.457 kb on + strand, within CA265_RS17535 at 4372.498 kb on + strand at 4372.498 kb on + strand at 4372.499 kb on - strand at 4372.523 kb on + strand at 4372.607 kb on - strand at 4372.621 kb on - strand at 4372.673 kb on + strand at 4372.692 kb on - strand at 4372.703 kb on + strand at 4372.717 kb on + strand at 4372.801 kb on + strand at 4372.861 kb on + strand at 4372.861 kb on + strand at 4372.894 kb on + strand, within CA265_RS17540 at 4372.913 kb on + strand, within CA265_RS17540 at 4372.914 kb on - strand, within CA265_RS17540 at 4372.925 kb on - strand, within CA265_RS17540 at 4372.950 kb on + strand, within CA265_RS17540 at 4372.950 kb on + strand, within CA265_RS17540 at 4373.038 kb on - strand, within CA265_RS17540 at 4373.053 kb on - strand, within CA265_RS17540 at 4373.274 kb on + strand, within CA265_RS17540 at 4373.274 kb on + strand, within CA265_RS17540 at 4373.305 kb on - strand, within CA265_RS17540 at 4373.308 kb on + strand, within CA265_RS17540 at 4373.323 kb on - strand, within CA265_RS17540 at 4373.341 kb on - strand, within CA265_RS17540 at 4373.344 kb on + strand, within CA265_RS17540 at 4373.383 kb on + strand, within CA265_RS17540 at 4373.389 kb on - strand, within CA265_RS17540 at 4373.389 kb on - strand, within CA265_RS17540 at 4373.420 kb on - strand, within CA265_RS17540 at 4373.436 kb on - strand, within CA265_RS17540 at 4373.436 kb on - strand, within CA265_RS17540 at 4373.437 kb on + strand, within CA265_RS17540 at 4373.467 kb on + strand, within CA265_RS17540 at 4373.468 kb on - strand, within CA265_RS17540 at 4373.577 kb on + strand, within CA265_RS17540
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 4,371,110 - +0.2 4,371,211 + +0.9 4,371,329 - -0.7 4,371,349 + -2.0 4,371,432 + +1.1 4,371,433 - -1.0 4,371,433 - -1.6 4,371,516 + CA265_RS17535 0.15 -2.6 4,371,516 + CA265_RS17535 0.15 +1.3 4,371,539 - CA265_RS17535 0.17 -1.6 4,371,610 - CA265_RS17535 0.22 -1.2 4,371,653 + CA265_RS17535 0.26 +0.8 4,371,670 - CA265_RS17535 0.27 -1.8 4,371,716 + CA265_RS17535 0.31 +1.0 4,371,771 + CA265_RS17535 0.35 +1.3 4,371,927 + CA265_RS17535 0.47 +1.6 4,371,928 - CA265_RS17535 0.47 -1.2 4,372,131 - CA265_RS17535 0.63 +0.1 4,372,187 + CA265_RS17535 0.67 +1.4 4,372,187 + CA265_RS17535 0.67 +1.2 4,372,188 - CA265_RS17535 0.68 -1.4 4,372,189 + CA265_RS17535 0.68 +0.9 4,372,190 - CA265_RS17535 0.68 +0.2 4,372,191 + CA265_RS17535 0.68 +1.0 4,372,196 + CA265_RS17535 0.68 +0.7 4,372,297 + CA265_RS17535 0.76 +1.4 4,372,315 + CA265_RS17535 0.77 +1.4 4,372,316 - CA265_RS17535 0.78 +0.8 4,372,337 + CA265_RS17535 0.79 +0.4 4,372,340 + CA265_RS17535 0.79 +1.8 4,372,341 - CA265_RS17535 0.80 +0.2 4,372,424 + CA265_RS17535 0.86 -0.6 4,372,437 - CA265_RS17535 0.87 +0.1 4,372,442 + CA265_RS17535 0.87 +0.8 4,372,457 + CA265_RS17535 0.89 +1.1 4,372,498 + +0.8 4,372,498 + +0.6 4,372,499 - -0.1 4,372,523 + +0.5 4,372,607 - +2.7 4,372,621 - -1.5 4,372,673 + +0.2 4,372,692 - +0.7 4,372,703 + -1.0 4,372,717 + -0.1 4,372,801 + -0.4 4,372,861 + -0.6 4,372,861 + +0.0 4,372,894 + CA265_RS17540 0.14 -0.5 4,372,913 + CA265_RS17540 0.16 -1.7 4,372,914 - CA265_RS17540 0.16 -0.4 4,372,925 - CA265_RS17540 0.17 -0.4 4,372,950 + CA265_RS17540 0.20 -0.2 4,372,950 + CA265_RS17540 0.20 +0.0 4,373,038 - CA265_RS17540 0.29 -0.3 4,373,053 - CA265_RS17540 0.31 +1.3 4,373,274 + CA265_RS17540 0.56 -0.1 4,373,274 + CA265_RS17540 0.56 +0.3 4,373,305 - CA265_RS17540 0.59 +0.1 4,373,308 + CA265_RS17540 0.59 +1.1 4,373,323 - CA265_RS17540 0.61 -0.6 4,373,341 - CA265_RS17540 0.63 +0.1 4,373,344 + CA265_RS17540 0.63 +0.3 4,373,383 + CA265_RS17540 0.68 +0.7 4,373,389 - CA265_RS17540 0.68 +0.6 4,373,389 - CA265_RS17540 0.68 -0.4 4,373,420 - CA265_RS17540 0.72 -0.2 4,373,436 - CA265_RS17540 0.74 +0.7 4,373,436 - CA265_RS17540 0.74 -0.1 4,373,437 + CA265_RS17540 0.74 +1.4 4,373,467 + CA265_RS17540 0.77 +0.3 4,373,468 - CA265_RS17540 0.77 +0.1 4,373,577 + CA265_RS17540 0.89 +0.7
Or see this region's nucleotide sequence