Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17535

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS17530 and CA265_RS17535 are separated by 234 nucleotidesCA265_RS17535 and CA265_RS17540 are separated by 170 nucleotides CA265_RS17530: CA265_RS17530 - 2-oxoglutarate dehydrogenase E1 component, at 4,368,297 to 4,371,092 _RS17530 CA265_RS17535: CA265_RS17535 - deoxyribodipyrimidine photolyase, at 4,371,327 to 4,372,601 _RS17535 CA265_RS17540: CA265_RS17540 - TIGR01777 family protein, at 4,372,772 to 4,373,674 _RS17540 Position (kb) 4371 4372 4373Strain fitness (log2 ratio) -2 -1 0 1 2at 4371.110 kb on - strandat 4371.211 kb on + strandat 4371.329 kb on - strandat 4371.349 kb on + strandat 4371.432 kb on + strandat 4371.433 kb on - strandat 4371.433 kb on - strandat 4371.516 kb on + strand, within CA265_RS17535at 4371.516 kb on + strand, within CA265_RS17535at 4371.539 kb on - strand, within CA265_RS17535at 4371.610 kb on - strand, within CA265_RS17535at 4371.653 kb on + strand, within CA265_RS17535at 4371.670 kb on - strand, within CA265_RS17535at 4371.716 kb on + strand, within CA265_RS17535at 4371.771 kb on + strand, within CA265_RS17535at 4371.927 kb on + strand, within CA265_RS17535at 4371.928 kb on - strand, within CA265_RS17535at 4372.131 kb on - strand, within CA265_RS17535at 4372.187 kb on + strand, within CA265_RS17535at 4372.187 kb on + strand, within CA265_RS17535at 4372.188 kb on - strand, within CA265_RS17535at 4372.189 kb on + strand, within CA265_RS17535at 4372.190 kb on - strand, within CA265_RS17535at 4372.191 kb on + strand, within CA265_RS17535at 4372.196 kb on + strand, within CA265_RS17535at 4372.297 kb on + strand, within CA265_RS17535at 4372.315 kb on + strand, within CA265_RS17535at 4372.316 kb on - strand, within CA265_RS17535at 4372.337 kb on + strand, within CA265_RS17535at 4372.340 kb on + strand, within CA265_RS17535at 4372.341 kb on - strand, within CA265_RS17535at 4372.424 kb on + strand, within CA265_RS17535at 4372.437 kb on - strand, within CA265_RS17535at 4372.442 kb on + strand, within CA265_RS17535at 4372.457 kb on + strand, within CA265_RS17535at 4372.498 kb on + strandat 4372.498 kb on + strandat 4372.499 kb on - strandat 4372.523 kb on + strandat 4372.607 kb on - strandat 4372.621 kb on - strandat 4372.673 kb on + strandat 4372.692 kb on - strandat 4372.703 kb on + strandat 4372.717 kb on + strandat 4372.801 kb on + strandat 4372.861 kb on + strandat 4372.861 kb on + strandat 4372.894 kb on + strand, within CA265_RS17540at 4372.913 kb on + strand, within CA265_RS17540at 4372.914 kb on - strand, within CA265_RS17540at 4372.925 kb on - strand, within CA265_RS17540at 4372.950 kb on + strand, within CA265_RS17540at 4372.950 kb on + strand, within CA265_RS17540at 4373.038 kb on - strand, within CA265_RS17540at 4373.053 kb on - strand, within CA265_RS17540at 4373.274 kb on + strand, within CA265_RS17540at 4373.274 kb on + strand, within CA265_RS17540at 4373.305 kb on - strand, within CA265_RS17540at 4373.308 kb on + strand, within CA265_RS17540at 4373.323 kb on - strand, within CA265_RS17540at 4373.341 kb on - strand, within CA265_RS17540at 4373.344 kb on + strand, within CA265_RS17540at 4373.383 kb on + strand, within CA265_RS17540at 4373.389 kb on - strand, within CA265_RS17540at 4373.389 kb on - strand, within CA265_RS17540at 4373.420 kb on - strand, within CA265_RS17540at 4373.436 kb on - strand, within CA265_RS17540at 4373.436 kb on - strand, within CA265_RS17540at 4373.437 kb on + strand, within CA265_RS17540at 4373.467 kb on + strand, within CA265_RS17540at 4373.468 kb on - strand, within CA265_RS17540at 4373.577 kb on + strand, within CA265_RS17540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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4,371,110 - +0.2
4,371,211 + +0.9
4,371,329 - -0.7
4,371,349 + -2.0
4,371,432 + +1.1
4,371,433 - -1.0
4,371,433 - -1.6
4,371,516 + CA265_RS17535 0.15 -2.6
4,371,516 + CA265_RS17535 0.15 +1.3
4,371,539 - CA265_RS17535 0.17 -1.6
4,371,610 - CA265_RS17535 0.22 -1.2
4,371,653 + CA265_RS17535 0.26 +0.8
4,371,670 - CA265_RS17535 0.27 -1.8
4,371,716 + CA265_RS17535 0.31 +1.0
4,371,771 + CA265_RS17535 0.35 +1.3
4,371,927 + CA265_RS17535 0.47 +1.6
4,371,928 - CA265_RS17535 0.47 -1.2
4,372,131 - CA265_RS17535 0.63 +0.1
4,372,187 + CA265_RS17535 0.67 +1.4
4,372,187 + CA265_RS17535 0.67 +1.2
4,372,188 - CA265_RS17535 0.68 -1.4
4,372,189 + CA265_RS17535 0.68 +0.9
4,372,190 - CA265_RS17535 0.68 +0.2
4,372,191 + CA265_RS17535 0.68 +1.0
4,372,196 + CA265_RS17535 0.68 +0.7
4,372,297 + CA265_RS17535 0.76 +1.4
4,372,315 + CA265_RS17535 0.77 +1.4
4,372,316 - CA265_RS17535 0.78 +0.8
4,372,337 + CA265_RS17535 0.79 +0.4
4,372,340 + CA265_RS17535 0.79 +1.8
4,372,341 - CA265_RS17535 0.80 +0.2
4,372,424 + CA265_RS17535 0.86 -0.6
4,372,437 - CA265_RS17535 0.87 +0.1
4,372,442 + CA265_RS17535 0.87 +0.8
4,372,457 + CA265_RS17535 0.89 +1.1
4,372,498 + +0.8
4,372,498 + +0.6
4,372,499 - -0.1
4,372,523 + +0.5
4,372,607 - +2.7
4,372,621 - -1.5
4,372,673 + +0.2
4,372,692 - +0.7
4,372,703 + -1.0
4,372,717 + -0.1
4,372,801 + -0.4
4,372,861 + -0.6
4,372,861 + +0.0
4,372,894 + CA265_RS17540 0.14 -0.5
4,372,913 + CA265_RS17540 0.16 -1.7
4,372,914 - CA265_RS17540 0.16 -0.4
4,372,925 - CA265_RS17540 0.17 -0.4
4,372,950 + CA265_RS17540 0.20 -0.2
4,372,950 + CA265_RS17540 0.20 +0.0
4,373,038 - CA265_RS17540 0.29 -0.3
4,373,053 - CA265_RS17540 0.31 +1.3
4,373,274 + CA265_RS17540 0.56 -0.1
4,373,274 + CA265_RS17540 0.56 +0.3
4,373,305 - CA265_RS17540 0.59 +0.1
4,373,308 + CA265_RS17540 0.59 +1.1
4,373,323 - CA265_RS17540 0.61 -0.6
4,373,341 - CA265_RS17540 0.63 +0.1
4,373,344 + CA265_RS17540 0.63 +0.3
4,373,383 + CA265_RS17540 0.68 +0.7
4,373,389 - CA265_RS17540 0.68 +0.6
4,373,389 - CA265_RS17540 0.68 -0.4
4,373,420 - CA265_RS17540 0.72 -0.2
4,373,436 - CA265_RS17540 0.74 +0.7
4,373,436 - CA265_RS17540 0.74 -0.1
4,373,437 + CA265_RS17540 0.74 +1.4
4,373,467 + CA265_RS17540 0.77 +0.3
4,373,468 - CA265_RS17540 0.77 +0.1
4,373,577 + CA265_RS17540 0.89 +0.7

Or see this region's nucleotide sequence