Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS13275 and CA265_RS13280 are separated by 362 nucleotides CA265_RS13280 and CA265_RS13285 are separated by 9 nucleotides CA265_RS13285 and CA265_RS13290 are separated by 294 nucleotides CA265_RS13290 and CA265_RS13295 are separated by 200 nucleotides
CA265_RS13275: CA265_RS13275 - redox-regulated ATPase YchF, at 3,297,218 to 3,298,318
_RS13275
CA265_RS13280: CA265_RS13280 - hydrolase, at 3,298,681 to 3,299,295
_RS13280
CA265_RS13285: CA265_RS13285 - magnesium transporter, at 3,299,305 to 3,300,681
_RS13285
CA265_RS13290: CA265_RS13290 - tRNA-Arg, at 3,300,976 to 3,301,050
_RS13290
CA265_RS13295: CA265_RS13295 - hypothetical protein, at 3,301,251 to 3,303,740
_RS13295
Position (kb)
3299
3300
3301 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3298.430 kb on + strand at 3298.573 kb on + strand at 3298.574 kb on - strand at 3298.583 kb on + strand at 3298.583 kb on + strand at 3298.587 kb on + strand at 3298.587 kb on + strand at 3298.588 kb on - strand at 3298.635 kb on + strand at 3298.635 kb on + strand at 3298.668 kb on + strand at 3298.669 kb on - strand at 3298.675 kb on + strand at 3298.682 kb on + strand at 3298.683 kb on - strand at 3298.698 kb on - strand at 3298.711 kb on + strand at 3298.757 kb on - strand, within CA265_RS13280 at 3298.799 kb on + strand, within CA265_RS13280 at 3298.799 kb on + strand, within CA265_RS13280 at 3298.800 kb on - strand, within CA265_RS13280 at 3298.800 kb on - strand, within CA265_RS13280 at 3298.800 kb on - strand, within CA265_RS13280 at 3298.986 kb on + strand, within CA265_RS13280 at 3298.988 kb on + strand, within CA265_RS13280 at 3298.989 kb on - strand, within CA265_RS13280 at 3298.989 kb on - strand, within CA265_RS13280 at 3299.103 kb on + strand, within CA265_RS13280 at 3299.129 kb on - strand, within CA265_RS13280 at 3299.144 kb on + strand, within CA265_RS13280 at 3299.144 kb on + strand, within CA265_RS13280 at 3299.145 kb on - strand, within CA265_RS13280 at 3299.145 kb on - strand, within CA265_RS13280 at 3299.145 kb on - strand, within CA265_RS13280 at 3299.149 kb on - strand, within CA265_RS13280 at 3299.158 kb on - strand, within CA265_RS13280 at 3299.281 kb on - strand at 3299.446 kb on - strand, within CA265_RS13285 at 3299.455 kb on + strand, within CA265_RS13285 at 3299.499 kb on + strand, within CA265_RS13285 at 3299.535 kb on + strand, within CA265_RS13285 at 3299.535 kb on + strand, within CA265_RS13285 at 3299.591 kb on - strand, within CA265_RS13285 at 3299.613 kb on + strand, within CA265_RS13285 at 3299.614 kb on - strand, within CA265_RS13285 at 3299.654 kb on - strand, within CA265_RS13285 at 3299.706 kb on + strand, within CA265_RS13285 at 3299.750 kb on - strand, within CA265_RS13285 at 3299.754 kb on + strand, within CA265_RS13285 at 3299.876 kb on + strand, within CA265_RS13285 at 3299.926 kb on - strand, within CA265_RS13285 at 3299.974 kb on + strand, within CA265_RS13285 at 3300.067 kb on + strand, within CA265_RS13285 at 3300.144 kb on + strand, within CA265_RS13285 at 3300.145 kb on - strand, within CA265_RS13285 at 3300.157 kb on + strand, within CA265_RS13285 at 3300.169 kb on - strand, within CA265_RS13285 at 3300.179 kb on + strand, within CA265_RS13285 at 3300.180 kb on - strand, within CA265_RS13285 at 3300.180 kb on - strand, within CA265_RS13285 at 3300.180 kb on - strand, within CA265_RS13285 at 3300.243 kb on + strand, within CA265_RS13285 at 3300.268 kb on - strand, within CA265_RS13285 at 3300.294 kb on + strand, within CA265_RS13285 at 3300.307 kb on - strand, within CA265_RS13285 at 3300.308 kb on + strand, within CA265_RS13285 at 3300.309 kb on - strand, within CA265_RS13285 at 3300.554 kb on + strand at 3300.555 kb on - strand at 3300.583 kb on + strand at 3300.583 kb on + strand at 3300.594 kb on + strand at 3300.620 kb on - strand at 3300.708 kb on + strand at 3300.708 kb on + strand at 3300.851 kb on - strand at 3300.874 kb on - strand at 3300.909 kb on + strand at 3300.909 kb on + strand at 3300.917 kb on - strand at 3300.961 kb on + strand at 3301.118 kb on + strand at 3301.124 kb on + strand at 3301.124 kb on + strand at 3301.124 kb on + strand at 3301.125 kb on - strand at 3301.229 kb on - strand at 3301.229 kb on - strand at 3301.229 kb on - strand at 3301.252 kb on + strand at 3301.253 kb on - strand at 3301.372 kb on - strand at 3301.382 kb on - strand at 3301.385 kb on + strand at 3301.385 kb on + strand at 3301.386 kb on - strand at 3301.386 kb on - strand at 3301.406 kb on + strand at 3301.474 kb on - strand at 3301.534 kb on + strand, within CA265_RS13295 at 3301.552 kb on + strand, within CA265_RS13295 at 3301.617 kb on - strand, within CA265_RS13295 at 3301.678 kb on + strand, within CA265_RS13295 at 3301.678 kb on + strand, within CA265_RS13295
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,298,430 + +0.5 3,298,573 + +0.4 3,298,574 - +0.6 3,298,583 + -0.9 3,298,583 + +0.7 3,298,587 + -1.5 3,298,587 + +0.1 3,298,588 - +1.3 3,298,635 + -0.1 3,298,635 + -0.4 3,298,668 + +0.7 3,298,669 - +0.6 3,298,675 + -1.1 3,298,682 + -0.9 3,298,683 - -0.7 3,298,698 - -1.1 3,298,711 + -0.7 3,298,757 - CA265_RS13280 0.12 -0.2 3,298,799 + CA265_RS13280 0.19 +1.5 3,298,799 + CA265_RS13280 0.19 +0.4 3,298,800 - CA265_RS13280 0.19 +0.1 3,298,800 - CA265_RS13280 0.19 -0.2 3,298,800 - CA265_RS13280 0.19 -0.4 3,298,986 + CA265_RS13280 0.50 +0.3 3,298,988 + CA265_RS13280 0.50 +0.8 3,298,989 - CA265_RS13280 0.50 +0.2 3,298,989 - CA265_RS13280 0.50 -0.5 3,299,103 + CA265_RS13280 0.69 +1.3 3,299,129 - CA265_RS13280 0.73 -0.0 3,299,144 + CA265_RS13280 0.75 -0.5 3,299,144 + CA265_RS13280 0.75 +1.7 3,299,145 - CA265_RS13280 0.75 -0.9 3,299,145 - CA265_RS13280 0.75 +0.1 3,299,145 - CA265_RS13280 0.75 +0.2 3,299,149 - CA265_RS13280 0.76 +0.8 3,299,158 - CA265_RS13280 0.78 -1.3 3,299,281 - +0.7 3,299,446 - CA265_RS13285 0.10 +0.8 3,299,455 + CA265_RS13285 0.11 -1.1 3,299,499 + CA265_RS13285 0.14 -0.5 3,299,535 + CA265_RS13285 0.17 -0.3 3,299,535 + CA265_RS13285 0.17 -1.5 3,299,591 - CA265_RS13285 0.21 +1.0 3,299,613 + CA265_RS13285 0.22 +0.3 3,299,614 - CA265_RS13285 0.22 -1.6 3,299,654 - CA265_RS13285 0.25 +0.7 3,299,706 + CA265_RS13285 0.29 -1.9 3,299,750 - CA265_RS13285 0.32 -0.4 3,299,754 + CA265_RS13285 0.33 +0.0 3,299,876 + CA265_RS13285 0.41 +0.7 3,299,926 - CA265_RS13285 0.45 +3.1 3,299,974 + CA265_RS13285 0.49 +0.5 3,300,067 + CA265_RS13285 0.55 -1.3 3,300,144 + CA265_RS13285 0.61 -0.2 3,300,145 - CA265_RS13285 0.61 +0.3 3,300,157 + CA265_RS13285 0.62 -0.9 3,300,169 - CA265_RS13285 0.63 +0.2 3,300,179 + CA265_RS13285 0.63 -0.6 3,300,180 - CA265_RS13285 0.64 +0.3 3,300,180 - CA265_RS13285 0.64 +1.3 3,300,180 - CA265_RS13285 0.64 +1.3 3,300,243 + CA265_RS13285 0.68 +0.2 3,300,268 - CA265_RS13285 0.70 +0.3 3,300,294 + CA265_RS13285 0.72 -1.0 3,300,307 - CA265_RS13285 0.73 -0.2 3,300,308 + CA265_RS13285 0.73 +0.5 3,300,309 - CA265_RS13285 0.73 +0.2 3,300,554 + +0.7 3,300,555 - -0.6 3,300,583 + +0.1 3,300,583 + +0.1 3,300,594 + +0.4 3,300,620 - -0.3 3,300,708 + -0.5 3,300,708 + -1.1 3,300,851 - -0.3 3,300,874 - +0.2 3,300,909 + +0.3 3,300,909 + +0.7 3,300,917 - +0.5 3,300,961 + +0.2 3,301,118 + +0.1 3,301,124 + +1.0 3,301,124 + +0.4 3,301,124 + -0.3 3,301,125 - -2.6 3,301,229 - -3.7 3,301,229 - -1.5 3,301,229 - -4.1 3,301,252 + +0.5 3,301,253 - +1.1 3,301,372 - -3.2 3,301,382 - -4.6 3,301,385 + -0.2 3,301,385 + +0.4 3,301,386 - -1.6 3,301,386 - -2.3 3,301,406 + -0.4 3,301,474 - -1.4 3,301,534 + CA265_RS13295 0.11 -0.7 3,301,552 + CA265_RS13295 0.12 -0.5 3,301,617 - CA265_RS13295 0.15 -1.0 3,301,678 + CA265_RS13295 0.17 -0.3 3,301,678 + CA265_RS13295 0.17 -0.1
Or see this region's nucleotide sequence