Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13285

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS13275 and CA265_RS13280 are separated by 362 nucleotidesCA265_RS13280 and CA265_RS13285 are separated by 9 nucleotidesCA265_RS13285 and CA265_RS13290 are separated by 294 nucleotidesCA265_RS13290 and CA265_RS13295 are separated by 200 nucleotides CA265_RS13275: CA265_RS13275 - redox-regulated ATPase YchF, at 3,297,218 to 3,298,318 _RS13275 CA265_RS13280: CA265_RS13280 - hydrolase, at 3,298,681 to 3,299,295 _RS13280 CA265_RS13285: CA265_RS13285 - magnesium transporter, at 3,299,305 to 3,300,681 _RS13285 CA265_RS13290: CA265_RS13290 - tRNA-Arg, at 3,300,976 to 3,301,050 _RS13290 CA265_RS13295: CA265_RS13295 - hypothetical protein, at 3,301,251 to 3,303,740 _RS13295 Position (kb) 3299 3300 3301Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3298.430 kb on + strandat 3298.573 kb on + strandat 3298.574 kb on - strandat 3298.583 kb on + strandat 3298.583 kb on + strandat 3298.587 kb on + strandat 3298.587 kb on + strandat 3298.588 kb on - strandat 3298.635 kb on + strandat 3298.635 kb on + strandat 3298.668 kb on + strandat 3298.669 kb on - strandat 3298.675 kb on + strandat 3298.682 kb on + strandat 3298.683 kb on - strandat 3298.698 kb on - strandat 3298.711 kb on + strandat 3298.757 kb on - strand, within CA265_RS13280at 3298.799 kb on + strand, within CA265_RS13280at 3298.799 kb on + strand, within CA265_RS13280at 3298.800 kb on - strand, within CA265_RS13280at 3298.800 kb on - strand, within CA265_RS13280at 3298.800 kb on - strand, within CA265_RS13280at 3298.986 kb on + strand, within CA265_RS13280at 3298.988 kb on + strand, within CA265_RS13280at 3298.989 kb on - strand, within CA265_RS13280at 3298.989 kb on - strand, within CA265_RS13280at 3299.103 kb on + strand, within CA265_RS13280at 3299.129 kb on - strand, within CA265_RS13280at 3299.144 kb on + strand, within CA265_RS13280at 3299.144 kb on + strand, within CA265_RS13280at 3299.145 kb on - strand, within CA265_RS13280at 3299.145 kb on - strand, within CA265_RS13280at 3299.145 kb on - strand, within CA265_RS13280at 3299.149 kb on - strand, within CA265_RS13280at 3299.158 kb on - strand, within CA265_RS13280at 3299.281 kb on - strandat 3299.446 kb on - strand, within CA265_RS13285at 3299.455 kb on + strand, within CA265_RS13285at 3299.499 kb on + strand, within CA265_RS13285at 3299.535 kb on + strand, within CA265_RS13285at 3299.535 kb on + strand, within CA265_RS13285at 3299.591 kb on - strand, within CA265_RS13285at 3299.613 kb on + strand, within CA265_RS13285at 3299.614 kb on - strand, within CA265_RS13285at 3299.654 kb on - strand, within CA265_RS13285at 3299.706 kb on + strand, within CA265_RS13285at 3299.750 kb on - strand, within CA265_RS13285at 3299.754 kb on + strand, within CA265_RS13285at 3299.876 kb on + strand, within CA265_RS13285at 3299.926 kb on - strand, within CA265_RS13285at 3299.974 kb on + strand, within CA265_RS13285at 3300.067 kb on + strand, within CA265_RS13285at 3300.144 kb on + strand, within CA265_RS13285at 3300.145 kb on - strand, within CA265_RS13285at 3300.157 kb on + strand, within CA265_RS13285at 3300.169 kb on - strand, within CA265_RS13285at 3300.179 kb on + strand, within CA265_RS13285at 3300.180 kb on - strand, within CA265_RS13285at 3300.180 kb on - strand, within CA265_RS13285at 3300.180 kb on - strand, within CA265_RS13285at 3300.243 kb on + strand, within CA265_RS13285at 3300.268 kb on - strand, within CA265_RS13285at 3300.294 kb on + strand, within CA265_RS13285at 3300.307 kb on - strand, within CA265_RS13285at 3300.308 kb on + strand, within CA265_RS13285at 3300.309 kb on - strand, within CA265_RS13285at 3300.554 kb on + strandat 3300.555 kb on - strandat 3300.583 kb on + strandat 3300.583 kb on + strandat 3300.594 kb on + strandat 3300.620 kb on - strandat 3300.708 kb on + strandat 3300.708 kb on + strandat 3300.851 kb on - strandat 3300.874 kb on - strandat 3300.909 kb on + strandat 3300.909 kb on + strandat 3300.917 kb on - strandat 3300.961 kb on + strandat 3301.118 kb on + strandat 3301.124 kb on + strandat 3301.124 kb on + strandat 3301.124 kb on + strandat 3301.125 kb on - strandat 3301.229 kb on - strandat 3301.229 kb on - strandat 3301.229 kb on - strandat 3301.252 kb on + strandat 3301.253 kb on - strandat 3301.372 kb on - strandat 3301.382 kb on - strandat 3301.385 kb on + strandat 3301.385 kb on + strandat 3301.386 kb on - strandat 3301.386 kb on - strandat 3301.406 kb on + strandat 3301.474 kb on - strandat 3301.534 kb on + strand, within CA265_RS13295at 3301.552 kb on + strand, within CA265_RS13295at 3301.617 kb on - strand, within CA265_RS13295at 3301.678 kb on + strand, within CA265_RS13295at 3301.678 kb on + strand, within CA265_RS13295

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,298,430 + +0.5
3,298,573 + +0.4
3,298,574 - +0.6
3,298,583 + -0.9
3,298,583 + +0.7
3,298,587 + -1.5
3,298,587 + +0.1
3,298,588 - +1.3
3,298,635 + -0.1
3,298,635 + -0.4
3,298,668 + +0.7
3,298,669 - +0.6
3,298,675 + -1.1
3,298,682 + -0.9
3,298,683 - -0.7
3,298,698 - -1.1
3,298,711 + -0.7
3,298,757 - CA265_RS13280 0.12 -0.2
3,298,799 + CA265_RS13280 0.19 +1.5
3,298,799 + CA265_RS13280 0.19 +0.4
3,298,800 - CA265_RS13280 0.19 +0.1
3,298,800 - CA265_RS13280 0.19 -0.2
3,298,800 - CA265_RS13280 0.19 -0.4
3,298,986 + CA265_RS13280 0.50 +0.3
3,298,988 + CA265_RS13280 0.50 +0.8
3,298,989 - CA265_RS13280 0.50 +0.2
3,298,989 - CA265_RS13280 0.50 -0.5
3,299,103 + CA265_RS13280 0.69 +1.3
3,299,129 - CA265_RS13280 0.73 -0.0
3,299,144 + CA265_RS13280 0.75 -0.5
3,299,144 + CA265_RS13280 0.75 +1.7
3,299,145 - CA265_RS13280 0.75 -0.9
3,299,145 - CA265_RS13280 0.75 +0.1
3,299,145 - CA265_RS13280 0.75 +0.2
3,299,149 - CA265_RS13280 0.76 +0.8
3,299,158 - CA265_RS13280 0.78 -1.3
3,299,281 - +0.7
3,299,446 - CA265_RS13285 0.10 +0.8
3,299,455 + CA265_RS13285 0.11 -1.1
3,299,499 + CA265_RS13285 0.14 -0.5
3,299,535 + CA265_RS13285 0.17 -0.3
3,299,535 + CA265_RS13285 0.17 -1.5
3,299,591 - CA265_RS13285 0.21 +1.0
3,299,613 + CA265_RS13285 0.22 +0.3
3,299,614 - CA265_RS13285 0.22 -1.6
3,299,654 - CA265_RS13285 0.25 +0.7
3,299,706 + CA265_RS13285 0.29 -1.9
3,299,750 - CA265_RS13285 0.32 -0.4
3,299,754 + CA265_RS13285 0.33 +0.0
3,299,876 + CA265_RS13285 0.41 +0.7
3,299,926 - CA265_RS13285 0.45 +3.1
3,299,974 + CA265_RS13285 0.49 +0.5
3,300,067 + CA265_RS13285 0.55 -1.3
3,300,144 + CA265_RS13285 0.61 -0.2
3,300,145 - CA265_RS13285 0.61 +0.3
3,300,157 + CA265_RS13285 0.62 -0.9
3,300,169 - CA265_RS13285 0.63 +0.2
3,300,179 + CA265_RS13285 0.63 -0.6
3,300,180 - CA265_RS13285 0.64 +0.3
3,300,180 - CA265_RS13285 0.64 +1.3
3,300,180 - CA265_RS13285 0.64 +1.3
3,300,243 + CA265_RS13285 0.68 +0.2
3,300,268 - CA265_RS13285 0.70 +0.3
3,300,294 + CA265_RS13285 0.72 -1.0
3,300,307 - CA265_RS13285 0.73 -0.2
3,300,308 + CA265_RS13285 0.73 +0.5
3,300,309 - CA265_RS13285 0.73 +0.2
3,300,554 + +0.7
3,300,555 - -0.6
3,300,583 + +0.1
3,300,583 + +0.1
3,300,594 + +0.4
3,300,620 - -0.3
3,300,708 + -0.5
3,300,708 + -1.1
3,300,851 - -0.3
3,300,874 - +0.2
3,300,909 + +0.3
3,300,909 + +0.7
3,300,917 - +0.5
3,300,961 + +0.2
3,301,118 + +0.1
3,301,124 + +1.0
3,301,124 + +0.4
3,301,124 + -0.3
3,301,125 - -2.6
3,301,229 - -3.7
3,301,229 - -1.5
3,301,229 - -4.1
3,301,252 + +0.5
3,301,253 - +1.1
3,301,372 - -3.2
3,301,382 - -4.6
3,301,385 + -0.2
3,301,385 + +0.4
3,301,386 - -1.6
3,301,386 - -2.3
3,301,406 + -0.4
3,301,474 - -1.4
3,301,534 + CA265_RS13295 0.11 -0.7
3,301,552 + CA265_RS13295 0.12 -0.5
3,301,617 - CA265_RS13295 0.15 -1.0
3,301,678 + CA265_RS13295 0.17 -0.3
3,301,678 + CA265_RS13295 0.17 -0.1

Or see this region's nucleotide sequence