Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13260

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS13255 and CA265_RS13260 are separated by 579 nucleotidesCA265_RS13260 and CA265_RS13265 are separated by 79 nucleotidesCA265_RS13265 and CA265_RS13270 are separated by 71 nucleotides CA265_RS13255: CA265_RS13255 - leucine dehydrogenase, at 3,292,634 to 3,293,722 _RS13255 CA265_RS13260: CA265_RS13260 - ABC transporter, at 3,294,302 to 3,296,092 _RS13260 CA265_RS13265: CA265_RS13265 - DNA-binding protein, at 3,296,172 to 3,296,495 _RS13265 CA265_RS13270: CA265_RS13270 - hypothetical protein, at 3,296,567 to 3,297,031 _RS13270 Position (kb) 3294 3295 3296 3297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3293.305 kb on - strand, within CA265_RS13255at 3293.326 kb on - strand, within CA265_RS13255at 3293.326 kb on - strand, within CA265_RS13255at 3293.326 kb on - strand, within CA265_RS13255at 3293.326 kb on - strand, within CA265_RS13255at 3293.393 kb on - strandat 3293.557 kb on - strand, within CA265_RS13255at 3293.607 kb on - strand, within CA265_RS13255at 3293.615 kb on - strandat 3293.679 kb on - strandat 3293.772 kb on + strandat 3293.772 kb on + strandat 3293.778 kb on + strandat 3293.779 kb on - strandat 3293.782 kb on + strandat 3293.791 kb on + strandat 3293.843 kb on + strandat 3293.894 kb on + strandat 3293.947 kb on - strandat 3294.045 kb on + strandat 3294.046 kb on - strandat 3294.127 kb on + strandat 3294.128 kb on - strandat 3294.139 kb on - strandat 3294.159 kb on - strandat 3294.188 kb on + strandat 3294.192 kb on + strandat 3294.197 kb on + strandat 3294.198 kb on - strandat 3294.257 kb on + strandat 3294.261 kb on + strandat 3294.261 kb on + strandat 3294.268 kb on + strandat 3294.288 kb on + strandat 3294.289 kb on - strandat 3294.422 kb on + strandat 3294.551 kb on + strand, within CA265_RS13260at 3294.615 kb on + strand, within CA265_RS13260at 3294.615 kb on + strand, within CA265_RS13260at 3294.637 kb on + strand, within CA265_RS13260at 3294.641 kb on + strand, within CA265_RS13260at 3294.642 kb on - strand, within CA265_RS13260at 3294.642 kb on - strand, within CA265_RS13260at 3294.650 kb on + strand, within CA265_RS13260at 3294.666 kb on + strand, within CA265_RS13260at 3294.685 kb on + strand, within CA265_RS13260at 3294.740 kb on + strand, within CA265_RS13260at 3294.740 kb on + strand, within CA265_RS13260at 3294.741 kb on - strand, within CA265_RS13260at 3294.741 kb on - strand, within CA265_RS13260at 3294.741 kb on - strand, within CA265_RS13260at 3294.758 kb on - strand, within CA265_RS13260at 3294.761 kb on + strand, within CA265_RS13260at 3294.761 kb on + strand, within CA265_RS13260at 3294.762 kb on - strand, within CA265_RS13260at 3294.770 kb on - strand, within CA265_RS13260at 3294.784 kb on - strand, within CA265_RS13260at 3294.789 kb on + strand, within CA265_RS13260at 3294.794 kb on - strand, within CA265_RS13260at 3294.794 kb on - strand, within CA265_RS13260at 3294.796 kb on + strand, within CA265_RS13260at 3294.816 kb on + strand, within CA265_RS13260at 3294.837 kb on - strand, within CA265_RS13260at 3294.875 kb on + strand, within CA265_RS13260at 3294.876 kb on - strand, within CA265_RS13260at 3294.882 kb on + strand, within CA265_RS13260at 3295.002 kb on - strand, within CA265_RS13260at 3295.003 kb on + strand, within CA265_RS13260at 3295.082 kb on + strand, within CA265_RS13260at 3295.130 kb on + strand, within CA265_RS13260at 3295.130 kb on + strand, within CA265_RS13260at 3295.131 kb on - strand, within CA265_RS13260at 3295.133 kb on - strand, within CA265_RS13260at 3295.133 kb on - strand, within CA265_RS13260at 3295.162 kb on + strand, within CA265_RS13260at 3295.241 kb on - strand, within CA265_RS13260at 3295.293 kb on + strand, within CA265_RS13260at 3295.375 kb on + strand, within CA265_RS13260at 3295.426 kb on + strand, within CA265_RS13260at 3295.451 kb on - strand, within CA265_RS13260at 3295.505 kb on + strand, within CA265_RS13260at 3295.505 kb on + strand, within CA265_RS13260at 3295.505 kb on + strand, within CA265_RS13260at 3295.505 kb on - strand, within CA265_RS13260at 3295.506 kb on - strand, within CA265_RS13260at 3295.531 kb on + strand, within CA265_RS13260at 3295.549 kb on + strand, within CA265_RS13260at 3295.627 kb on - strand, within CA265_RS13260at 3295.678 kb on + strand, within CA265_RS13260at 3295.678 kb on + strand, within CA265_RS13260at 3295.679 kb on - strand, within CA265_RS13260at 3295.705 kb on + strand, within CA265_RS13260at 3295.706 kb on - strand, within CA265_RS13260at 3295.711 kb on + strand, within CA265_RS13260at 3295.761 kb on + strand, within CA265_RS13260at 3295.834 kb on - strand, within CA265_RS13260at 3295.921 kb on + strandat 3295.921 kb on + strandat 3295.922 kb on - strandat 3295.949 kb on + strandat 3295.964 kb on - strandat 3296.020 kb on - strandat 3296.023 kb on + strandat 3296.023 kb on + strandat 3296.091 kb on - strandat 3296.109 kb on - strandat 3296.133 kb on + strandat 3296.135 kb on + strandat 3296.164 kb on + strandat 3296.241 kb on + strand, within CA265_RS13265at 3296.262 kb on - strand, within CA265_RS13265at 3296.264 kb on + strand, within CA265_RS13265at 3296.278 kb on - strand, within CA265_RS13265at 3296.348 kb on - strand, within CA265_RS13265at 3296.443 kb on - strand, within CA265_RS13265at 3296.557 kb on - strandat 3296.558 kb on + strandat 3296.559 kb on - strandat 3296.559 kb on - strandat 3296.579 kb on + strandat 3296.631 kb on - strand, within CA265_RS13270at 3296.637 kb on + strand, within CA265_RS13270at 3296.638 kb on + strand, within CA265_RS13270at 3296.790 kb on + strand, within CA265_RS13270at 3296.797 kb on + strand, within CA265_RS13270at 3296.835 kb on - strand, within CA265_RS13270at 3296.891 kb on + strand, within CA265_RS13270at 3296.948 kb on - strand, within CA265_RS13270at 3296.954 kb on - strand, within CA265_RS13270at 3296.954 kb on - strand, within CA265_RS13270at 3297.033 kb on + strandat 3297.034 kb on - strandat 3297.034 kb on - strandat 3297.034 kb on - strandat 3297.043 kb on + strandat 3297.053 kb on + strandat 3297.064 kb on - strandat 3297.069 kb on - strandat 3297.069 kb on - strandat 3297.084 kb on + strandat 3297.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,293,305 - CA265_RS13255 0.62 +0.2
3,293,326 - CA265_RS13255 0.64 +0.2
3,293,326 - CA265_RS13255 0.64 +0.4
3,293,326 - CA265_RS13255 0.64 +0.7
3,293,326 - CA265_RS13255 0.64 +0.6
3,293,393 - +0.4
3,293,557 - CA265_RS13255 0.85 +0.7
3,293,607 - CA265_RS13255 0.89 +0.9
3,293,615 - +0.1
3,293,679 - -0.7
3,293,772 + +0.6
3,293,772 + +1.0
3,293,778 + +0.1
3,293,779 - +0.2
3,293,782 + -0.1
3,293,791 + -0.3
3,293,843 + +0.8
3,293,894 + -1.1
3,293,947 - +0.7
3,294,045 + -1.2
3,294,046 - +0.2
3,294,127 + -0.2
3,294,128 - -0.4
3,294,139 - -0.2
3,294,159 - +0.0
3,294,188 + -0.5
3,294,192 + -0.9
3,294,197 + +0.2
3,294,198 - +1.7
3,294,257 + -0.3
3,294,261 + -0.3
3,294,261 + -0.6
3,294,268 + +0.4
3,294,288 + +0.9
3,294,289 - +1.1
3,294,422 + +1.5
3,294,551 + CA265_RS13260 0.14 +1.9
3,294,615 + CA265_RS13260 0.17 +1.3
3,294,615 + CA265_RS13260 0.17 +1.6
3,294,637 + CA265_RS13260 0.19 +1.4
3,294,641 + CA265_RS13260 0.19 +1.5
3,294,642 - CA265_RS13260 0.19 +2.0
3,294,642 - CA265_RS13260 0.19 +1.6
3,294,650 + CA265_RS13260 0.19 +1.1
3,294,666 + CA265_RS13260 0.20 +0.4
3,294,685 + CA265_RS13260 0.21 +2.0
3,294,740 + CA265_RS13260 0.24 +1.5
3,294,740 + CA265_RS13260 0.24 +1.1
3,294,741 - CA265_RS13260 0.25 +1.3
3,294,741 - CA265_RS13260 0.25 +1.5
3,294,741 - CA265_RS13260 0.25 +2.2
3,294,758 - CA265_RS13260 0.25 +0.8
3,294,761 + CA265_RS13260 0.26 +1.9
3,294,761 + CA265_RS13260 0.26 +1.6
3,294,762 - CA265_RS13260 0.26 +1.6
3,294,770 - CA265_RS13260 0.26 +2.5
3,294,784 - CA265_RS13260 0.27 +1.2
3,294,789 + CA265_RS13260 0.27 +1.8
3,294,794 - CA265_RS13260 0.27 +1.3
3,294,794 - CA265_RS13260 0.27 +1.2
3,294,796 + CA265_RS13260 0.28 +2.0
3,294,816 + CA265_RS13260 0.29 +1.3
3,294,837 - CA265_RS13260 0.30 +1.6
3,294,875 + CA265_RS13260 0.32 +1.8
3,294,876 - CA265_RS13260 0.32 +2.3
3,294,882 + CA265_RS13260 0.32 +1.7
3,295,002 - CA265_RS13260 0.39 +1.9
3,295,003 + CA265_RS13260 0.39 +2.4
3,295,082 + CA265_RS13260 0.44 +2.1
3,295,130 + CA265_RS13260 0.46 -0.4
3,295,130 + CA265_RS13260 0.46 +2.5
3,295,131 - CA265_RS13260 0.46 +1.9
3,295,133 - CA265_RS13260 0.46 +1.3
3,295,133 - CA265_RS13260 0.46 +1.5
3,295,162 + CA265_RS13260 0.48 +2.7
3,295,241 - CA265_RS13260 0.52 -0.2
3,295,293 + CA265_RS13260 0.55 +1.4
3,295,375 + CA265_RS13260 0.60 +1.5
3,295,426 + CA265_RS13260 0.63 +0.2
3,295,451 - CA265_RS13260 0.64 +2.0
3,295,505 + CA265_RS13260 0.67 +1.4
3,295,505 + CA265_RS13260 0.67 +1.5
3,295,505 + CA265_RS13260 0.67 +1.3
3,295,505 - CA265_RS13260 0.67 +1.6
3,295,506 - CA265_RS13260 0.67 +1.0
3,295,531 + CA265_RS13260 0.69 +1.7
3,295,549 + CA265_RS13260 0.70 +1.2
3,295,627 - CA265_RS13260 0.74 +1.0
3,295,678 + CA265_RS13260 0.77 +1.7
3,295,678 + CA265_RS13260 0.77 +0.6
3,295,679 - CA265_RS13260 0.77 +1.4
3,295,705 + CA265_RS13260 0.78 +2.9
3,295,706 - CA265_RS13260 0.78 +1.5
3,295,711 + CA265_RS13260 0.79 +1.8
3,295,761 + CA265_RS13260 0.81 +1.5
3,295,834 - CA265_RS13260 0.86 +1.6
3,295,921 + +0.9
3,295,921 + +1.1
3,295,922 - +1.8
3,295,949 + +0.3
3,295,964 - +1.1
3,296,020 - +1.9
3,296,023 + -0.7
3,296,023 + -1.2
3,296,091 - -0.0
3,296,109 - +0.9
3,296,133 + +0.4
3,296,135 + +0.4
3,296,164 + +0.5
3,296,241 + CA265_RS13265 0.21 +1.7
3,296,262 - CA265_RS13265 0.28 +0.4
3,296,264 + CA265_RS13265 0.28 -0.7
3,296,278 - CA265_RS13265 0.33 -2.9
3,296,348 - CA265_RS13265 0.54 +0.1
3,296,443 - CA265_RS13265 0.84 +0.4
3,296,557 - +0.4
3,296,558 + -1.2
3,296,559 - +0.6
3,296,559 - +0.1
3,296,579 + +0.4
3,296,631 - CA265_RS13270 0.14 -0.5
3,296,637 + CA265_RS13270 0.15 +0.3
3,296,638 + CA265_RS13270 0.15 +2.3
3,296,790 + CA265_RS13270 0.48 +0.7
3,296,797 + CA265_RS13270 0.49 +2.1
3,296,835 - CA265_RS13270 0.58 +0.9
3,296,891 + CA265_RS13270 0.70 +0.2
3,296,948 - CA265_RS13270 0.82 -0.1
3,296,954 - CA265_RS13270 0.83 -1.3
3,296,954 - CA265_RS13270 0.83 -0.6
3,297,033 + -0.2
3,297,034 - +0.1
3,297,034 - +0.1
3,297,034 - +0.3
3,297,043 + -1.6
3,297,053 + -0.6
3,297,064 - +0.3
3,297,069 - +0.4
3,297,069 - +0.4
3,297,084 + -2.0
3,297,085 - +1.0

Or see this region's nucleotide sequence