Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS07480 and CA265_RS07485 are separated by 119 nucleotides CA265_RS07485 and CA265_RS07490 are separated by 77 nucleotides CA265_RS07490 and CA265_RS07495 are separated by 85 nucleotides CA265_RS07495 and CA265_RS07500 are separated by 433 nucleotides
CA265_RS07480: CA265_RS07480 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 1,886,972 to 1,887,262
_RS07480
CA265_RS07485: CA265_RS07485 - macrolide ABC transporter ATP-binding protein, at 1,887,382 to 1,888,140
_RS07485
CA265_RS07490: CA265_RS07490 - ATP:cob(I)alamin adenosyltransferase, at 1,888,218 to 1,888,766
_RS07490
CA265_RS07495: CA265_RS07495 - hypothetical protein, at 1,888,852 to 1,889,073
_RS07495
CA265_RS07500: CA265_RS07500 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,889,507 to 1,890,172
_RS07500
Position (kb)
1888
1889 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1887.263 kb on + strand at 1887.269 kb on + strand at 1887.358 kb on - strand at 1887.424 kb on + strand at 1887.455 kb on + strand at 1887.474 kb on + strand, within CA265_RS07485 at 1887.475 kb on - strand, within CA265_RS07485 at 1887.477 kb on + strand, within CA265_RS07485 at 1887.478 kb on - strand, within CA265_RS07485 at 1887.540 kb on + strand, within CA265_RS07485 at 1887.545 kb on + strand, within CA265_RS07485 at 1887.558 kb on + strand, within CA265_RS07485 at 1887.578 kb on - strand, within CA265_RS07485 at 1887.637 kb on - strand, within CA265_RS07485 at 1887.700 kb on - strand, within CA265_RS07485 at 1887.705 kb on - strand, within CA265_RS07485 at 1887.716 kb on + strand, within CA265_RS07485 at 1887.770 kb on + strand, within CA265_RS07485 at 1887.785 kb on + strand, within CA265_RS07485 at 1887.785 kb on + strand, within CA265_RS07485 at 1887.804 kb on + strand, within CA265_RS07485 at 1887.805 kb on - strand, within CA265_RS07485 at 1887.868 kb on - strand, within CA265_RS07485 at 1887.880 kb on - strand, within CA265_RS07485 at 1887.884 kb on + strand, within CA265_RS07485 at 1887.908 kb on + strand, within CA265_RS07485 at 1887.908 kb on + strand, within CA265_RS07485 at 1887.908 kb on + strand, within CA265_RS07485 at 1887.908 kb on + strand, within CA265_RS07485 at 1887.970 kb on - strand, within CA265_RS07485 at 1887.999 kb on + strand, within CA265_RS07485 at 1888.000 kb on - strand, within CA265_RS07485 at 1888.025 kb on + strand, within CA265_RS07485 at 1888.025 kb on + strand, within CA265_RS07485 at 1888.062 kb on - strand, within CA265_RS07485 at 1888.065 kb on + strand at 1888.083 kb on - strand at 1888.110 kb on + strand at 1888.153 kb on - strand at 1888.287 kb on + strand, within CA265_RS07490 at 1888.345 kb on + strand, within CA265_RS07490 at 1888.345 kb on + strand, within CA265_RS07490 at 1888.361 kb on + strand, within CA265_RS07490 at 1888.413 kb on - strand, within CA265_RS07490 at 1888.413 kb on - strand, within CA265_RS07490 at 1888.413 kb on - strand, within CA265_RS07490 at 1888.413 kb on - strand, within CA265_RS07490 at 1888.644 kb on - strand, within CA265_RS07490 at 1888.664 kb on - strand, within CA265_RS07490 at 1888.671 kb on + strand, within CA265_RS07490 at 1888.692 kb on + strand, within CA265_RS07490 at 1888.692 kb on + strand, within CA265_RS07490 at 1888.693 kb on - strand, within CA265_RS07490 at 1888.693 kb on - strand, within CA265_RS07490 at 1888.696 kb on + strand, within CA265_RS07490 at 1888.768 kb on - strand at 1888.807 kb on + strand at 1888.822 kb on + strand at 1888.836 kb on + strand at 1889.153 kb on - strand at 1889.155 kb on - strand at 1889.175 kb on + strand at 1889.180 kb on - strand at 1889.216 kb on + strand at 1889.238 kb on - strand at 1889.238 kb on - strand at 1889.268 kb on - strand at 1889.268 kb on - strand at 1889.283 kb on + strand at 1889.289 kb on + strand at 1889.292 kb on + strand at 1889.314 kb on - strand at 1889.341 kb on + strand at 1889.392 kb on - strand at 1889.415 kb on + strand at 1889.415 kb on + strand at 1889.416 kb on - strand at 1889.417 kb on + strand at 1889.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,887,263 + -0.0 1,887,269 + -0.1 1,887,358 - +0.4 1,887,424 + +0.1 1,887,455 + +0.6 1,887,474 + CA265_RS07485 0.12 +1.1 1,887,475 - CA265_RS07485 0.12 +0.8 1,887,477 + CA265_RS07485 0.13 +1.0 1,887,478 - CA265_RS07485 0.13 +1.6 1,887,540 + CA265_RS07485 0.21 +0.1 1,887,545 + CA265_RS07485 0.21 +0.2 1,887,558 + CA265_RS07485 0.23 +0.2 1,887,578 - CA265_RS07485 0.26 -0.0 1,887,637 - CA265_RS07485 0.34 -0.4 1,887,700 - CA265_RS07485 0.42 +0.4 1,887,705 - CA265_RS07485 0.43 -1.6 1,887,716 + CA265_RS07485 0.44 -0.4 1,887,770 + CA265_RS07485 0.51 -0.8 1,887,785 + CA265_RS07485 0.53 -1.3 1,887,785 + CA265_RS07485 0.53 -0.6 1,887,804 + CA265_RS07485 0.56 -1.0 1,887,805 - CA265_RS07485 0.56 -0.3 1,887,868 - CA265_RS07485 0.64 -0.1 1,887,880 - CA265_RS07485 0.66 +0.1 1,887,884 + CA265_RS07485 0.66 +0.8 1,887,908 + CA265_RS07485 0.69 +0.3 1,887,908 + CA265_RS07485 0.69 +0.6 1,887,908 + CA265_RS07485 0.69 +0.9 1,887,908 + CA265_RS07485 0.69 +0.9 1,887,970 - CA265_RS07485 0.77 +1.1 1,887,999 + CA265_RS07485 0.81 +0.6 1,888,000 - CA265_RS07485 0.81 -1.0 1,888,025 + CA265_RS07485 0.85 +2.1 1,888,025 + CA265_RS07485 0.85 +0.3 1,888,062 - CA265_RS07485 0.90 -0.0 1,888,065 + +1.6 1,888,083 - -0.2 1,888,110 + -0.9 1,888,153 - +0.4 1,888,287 + CA265_RS07490 0.13 +1.7 1,888,345 + CA265_RS07490 0.23 +0.8 1,888,345 + CA265_RS07490 0.23 +1.2 1,888,361 + CA265_RS07490 0.26 +1.5 1,888,413 - CA265_RS07490 0.36 +0.4 1,888,413 - CA265_RS07490 0.36 +0.1 1,888,413 - CA265_RS07490 0.36 -0.9 1,888,413 - CA265_RS07490 0.36 +0.4 1,888,644 - CA265_RS07490 0.78 +0.7 1,888,664 - CA265_RS07490 0.81 +0.6 1,888,671 + CA265_RS07490 0.83 +0.6 1,888,692 + CA265_RS07490 0.86 +1.4 1,888,692 + CA265_RS07490 0.86 +1.9 1,888,693 - CA265_RS07490 0.87 -0.0 1,888,693 - CA265_RS07490 0.87 +0.3 1,888,696 + CA265_RS07490 0.87 +0.6 1,888,768 - -1.4 1,888,807 + -0.2 1,888,822 + -1.3 1,888,836 + -1.4 1,889,153 - -0.5 1,889,155 - -0.4 1,889,175 + -0.5 1,889,180 - +0.9 1,889,216 + +0.4 1,889,238 - -1.7 1,889,238 - +0.1 1,889,268 - -0.1 1,889,268 - -0.2 1,889,283 + +1.7 1,889,289 + -4.9 1,889,292 + -0.0 1,889,314 - -0.1 1,889,341 + -0.2 1,889,392 - -0.7 1,889,415 + -0.4 1,889,415 + +0.9 1,889,416 - -0.2 1,889,417 + +0.4 1,889,418 - +0.4
Or see this region's nucleotide sequence