Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02210 and CA265_RS02215 are separated by 63 nucleotides CA265_RS02215 and CA265_RS02220 are separated by 133 nucleotides CA265_RS02220 and CA265_RS02225 are separated by 168 nucleotides
CA265_RS02210: CA265_RS02210 - threonine aldolase, at 558,286 to 559,311
_RS02210
CA265_RS02215: CA265_RS02215 - acetyl-CoA carboxylase biotin carboxylase subunit, at 559,375 to 560,886
_RS02215
CA265_RS02220: CA265_RS02220 - riboflavin synthase, at 561,020 to 561,604
_RS02220
CA265_RS02225: CA265_RS02225 - alpha-L-rhamnosidase, at 561,773 to 564,421
_RS02225
Position (kb) 559
560
561 Strain fitness (log2 ratio) -2
-1
0
1
2 at 558.438 kb on + strand, within CA265_RS02210 at 558.455 kb on + strand, within CA265_RS02210 at 558.495 kb on + strand, within CA265_RS02210 at 558.548 kb on + strand, within CA265_RS02210 at 558.606 kb on - strand, within CA265_RS02210 at 558.606 kb on - strand, within CA265_RS02210 at 558.607 kb on + strand, within CA265_RS02210 at 558.664 kb on - strand, within CA265_RS02210 at 558.699 kb on - strand, within CA265_RS02210 at 558.714 kb on + strand, within CA265_RS02210 at 558.715 kb on - strand, within CA265_RS02210 at 558.715 kb on - strand, within CA265_RS02210 at 558.735 kb on + strand, within CA265_RS02210 at 558.736 kb on - strand, within CA265_RS02210 at 558.757 kb on - strand, within CA265_RS02210 at 558.776 kb on + strand, within CA265_RS02210 at 558.777 kb on - strand, within CA265_RS02210 at 558.777 kb on - strand, within CA265_RS02210 at 558.786 kb on - strand, within CA265_RS02210 at 558.854 kb on - strand, within CA265_RS02210 at 558.862 kb on + strand, within CA265_RS02210 at 559.004 kb on + strand, within CA265_RS02210 at 559.021 kb on + strand, within CA265_RS02210 at 559.079 kb on + strand, within CA265_RS02210 at 559.105 kb on + strand, within CA265_RS02210 at 559.138 kb on - strand, within CA265_RS02210 at 559.138 kb on - strand, within CA265_RS02210 at 559.293 kb on - strand at 559.322 kb on - strand at 559.350 kb on + strand at 559.449 kb on + strand at 559.450 kb on - strand at 559.526 kb on + strand at 559.527 kb on - strand, within CA265_RS02215 at 559.527 kb on - strand, within CA265_RS02215 at 559.579 kb on + strand, within CA265_RS02215 at 559.873 kb on - strand, within CA265_RS02215 at 559.908 kb on - strand, within CA265_RS02215 at 560.005 kb on + strand, within CA265_RS02215 at 560.005 kb on + strand, within CA265_RS02215 at 560.011 kb on - strand, within CA265_RS02215 at 560.011 kb on - strand, within CA265_RS02215 at 560.061 kb on + strand, within CA265_RS02215 at 560.117 kb on + strand, within CA265_RS02215 at 560.181 kb on - strand, within CA265_RS02215 at 560.187 kb on - strand, within CA265_RS02215 at 560.310 kb on + strand, within CA265_RS02215 at 560.316 kb on + strand, within CA265_RS02215 at 560.319 kb on - strand, within CA265_RS02215 at 560.340 kb on - strand, within CA265_RS02215 at 560.476 kb on - strand, within CA265_RS02215 at 560.476 kb on - strand, within CA265_RS02215 at 560.499 kb on - strand, within CA265_RS02215 at 560.542 kb on + strand, within CA265_RS02215 at 560.630 kb on - strand, within CA265_RS02215 at 560.635 kb on - strand, within CA265_RS02215 at 560.635 kb on - strand, within CA265_RS02215 at 560.653 kb on - strand, within CA265_RS02215 at 560.653 kb on - strand, within CA265_RS02215 at 560.667 kb on + strand, within CA265_RS02215 at 560.731 kb on + strand, within CA265_RS02215 at 560.731 kb on + strand, within CA265_RS02215 at 560.732 kb on - strand, within CA265_RS02215 at 560.737 kb on - strand at 560.778 kb on - strand at 560.778 kb on - strand at 560.954 kb on - strand at 560.956 kb on + strand at 561.002 kb on - strand at 561.635 kb on - strand at 561.745 kb on + strand at 561.805 kb on - strand at 561.805 kb on - strand at 561.836 kb on - strand at 561.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 558,438 + CA265_RS02210 0.15 +0.2 558,455 + CA265_RS02210 0.16 +0.1 558,495 + CA265_RS02210 0.20 +0.5 558,548 + CA265_RS02210 0.26 -0.8 558,606 - CA265_RS02210 0.31 -1.0 558,606 - CA265_RS02210 0.31 +1.1 558,607 + CA265_RS02210 0.31 -0.1 558,664 - CA265_RS02210 0.37 -0.7 558,699 - CA265_RS02210 0.40 +0.4 558,714 + CA265_RS02210 0.42 -2.6 558,715 - CA265_RS02210 0.42 +0.2 558,715 - CA265_RS02210 0.42 +1.1 558,735 + CA265_RS02210 0.44 -1.6 558,736 - CA265_RS02210 0.44 -0.7 558,757 - CA265_RS02210 0.46 -0.2 558,776 + CA265_RS02210 0.48 -0.3 558,777 - CA265_RS02210 0.48 -0.0 558,777 - CA265_RS02210 0.48 -0.7 558,786 - CA265_RS02210 0.49 +0.3 558,854 - CA265_RS02210 0.55 +1.1 558,862 + CA265_RS02210 0.56 -1.4 559,004 + CA265_RS02210 0.70 +0.5 559,021 + CA265_RS02210 0.72 +0.0 559,079 + CA265_RS02210 0.77 +1.1 559,105 + CA265_RS02210 0.80 -1.5 559,138 - CA265_RS02210 0.83 +0.0 559,138 - CA265_RS02210 0.83 +0.9 559,293 - +0.7 559,322 - +0.8 559,350 + +0.5 559,449 + +0.5 559,450 - +0.7 559,526 + +0.0 559,527 - CA265_RS02215 0.10 -0.2 559,527 - CA265_RS02215 0.10 +0.4 559,579 + CA265_RS02215 0.13 +2.7 559,873 - CA265_RS02215 0.33 -0.8 559,908 - CA265_RS02215 0.35 -2.4 560,005 + CA265_RS02215 0.42 -1.0 560,005 + CA265_RS02215 0.42 +0.5 560,011 - CA265_RS02215 0.42 +0.7 560,011 - CA265_RS02215 0.42 -1.1 560,061 + CA265_RS02215 0.45 -0.3 560,117 + CA265_RS02215 0.49 +0.4 560,181 - CA265_RS02215 0.53 +1.1 560,187 - CA265_RS02215 0.54 +0.2 560,310 + CA265_RS02215 0.62 +2.3 560,316 + CA265_RS02215 0.62 +0.5 560,319 - CA265_RS02215 0.62 +0.8 560,340 - CA265_RS02215 0.64 +0.5 560,476 - CA265_RS02215 0.73 +0.3 560,476 - CA265_RS02215 0.73 +0.7 560,499 - CA265_RS02215 0.74 +0.7 560,542 + CA265_RS02215 0.77 -1.6 560,630 - CA265_RS02215 0.83 -1.0 560,635 - CA265_RS02215 0.83 -0.2 560,635 - CA265_RS02215 0.83 +0.1 560,653 - CA265_RS02215 0.85 -0.3 560,653 - CA265_RS02215 0.85 -1.5 560,667 + CA265_RS02215 0.85 -2.0 560,731 + CA265_RS02215 0.90 -0.3 560,731 + CA265_RS02215 0.90 -0.7 560,732 - CA265_RS02215 0.90 -1.2 560,737 - +0.6 560,778 - -0.5 560,778 - -0.3 560,954 - +0.8 560,956 + -2.7 561,002 - -1.4 561,635 - -0.1 561,745 + +0.7 561,805 - -1.5 561,805 - -0.4 561,836 - +0.1 561,836 - -1.2
Or see this region's nucleotide sequence