Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00765 and CA265_RS00770 are separated by 32 nucleotides CA265_RS00770 and CA265_RS00775 are separated by 120 nucleotides CA265_RS00775 and CA265_RS00780 are separated by 60 nucleotides CA265_RS00780 and CA265_RS00785 are separated by 295 nucleotides
CA265_RS00765: CA265_RS00765 - hypothetical protein, at 184,722 to 185,567
_RS00765
CA265_RS00770: CA265_RS00770 - hypothetical protein, at 185,600 to 186,004
_RS00770
CA265_RS00775: CA265_RS00775 - carbonic anhydrase, at 186,125 to 186,751
_RS00775
CA265_RS00780: CA265_RS00780 - hypothetical protein, at 186,812 to 187,321
_RS00780
CA265_RS00785: CA265_RS00785 - hypothetical protein, at 187,617 to 188,228
_RS00785
Position (kb) 186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.085 kb on - strand at 186.113 kb on + strand at 186.114 kb on - strand at 186.114 kb on - strand at 186.126 kb on + strand at 186.127 kb on - strand at 186.129 kb on + strand at 186.139 kb on - strand at 186.284 kb on - strand at 186.304 kb on + strand, within CA265_RS00775 at 186.304 kb on + strand, within CA265_RS00775 at 186.312 kb on - strand, within CA265_RS00775 at 186.324 kb on + strand, within CA265_RS00775 at 186.325 kb on - strand at 186.377 kb on + strand, within CA265_RS00775 at 186.378 kb on - strand, within CA265_RS00775 at 186.411 kb on - strand, within CA265_RS00775 at 186.479 kb on - strand, within CA265_RS00775 at 186.524 kb on + strand, within CA265_RS00775 at 186.524 kb on + strand, within CA265_RS00775 at 186.524 kb on + strand, within CA265_RS00775 at 186.530 kb on + strand, within CA265_RS00775 at 186.569 kb on + strand, within CA265_RS00775 at 186.590 kb on + strand, within CA265_RS00775 at 186.590 kb on + strand, within CA265_RS00775 at 186.623 kb on - strand, within CA265_RS00775 at 186.639 kb on + strand, within CA265_RS00775 at 186.691 kb on + strand at 186.743 kb on + strand at 186.743 kb on + strand at 186.783 kb on + strand at 186.821 kb on + strand at 186.823 kb on + strand at 186.891 kb on + strand, within CA265_RS00780 at 187.093 kb on - strand, within CA265_RS00780 at 187.117 kb on + strand, within CA265_RS00780 at 187.118 kb on - strand, within CA265_RS00780 at 187.126 kb on + strand, within CA265_RS00780 at 187.127 kb on - strand, within CA265_RS00780 at 187.131 kb on + strand, within CA265_RS00780 at 187.132 kb on - strand, within CA265_RS00780 at 187.308 kb on - strand at 187.340 kb on - strand at 187.340 kb on - strand at 187.360 kb on + strand at 187.360 kb on + strand at 187.360 kb on + strand at 187.424 kb on + strand at 187.425 kb on - strand at 187.425 kb on - strand at 187.430 kb on - strand at 187.453 kb on - strand at 187.576 kb on + strand at 187.577 kb on - strand at 187.673 kb on + strand at 187.673 kb on + strand at 187.676 kb on - strand at 187.717 kb on + strand, within CA265_RS00785 at 187.718 kb on - strand, within CA265_RS00785 at 187.718 kb on - strand, within CA265_RS00785 at 187.718 kb on - strand, within CA265_RS00785
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 186,085 - -0.9 186,113 + +0.7 186,114 - +0.1 186,114 - -2.0 186,126 + +0.6 186,127 - -0.7 186,129 + -0.3 186,139 - -2.1 186,284 - +0.9 186,304 + CA265_RS00775 0.29 +0.4 186,304 + CA265_RS00775 0.29 +0.5 186,312 - CA265_RS00775 0.30 +0.9 186,324 + CA265_RS00775 0.32 +0.5 186,325 - +3.7 186,377 + CA265_RS00775 0.40 -0.7 186,378 - CA265_RS00775 0.40 +1.1 186,411 - CA265_RS00775 0.46 +0.7 186,479 - CA265_RS00775 0.56 -0.6 186,524 + CA265_RS00775 0.64 -0.6 186,524 + CA265_RS00775 0.64 -0.1 186,524 + CA265_RS00775 0.64 +0.1 186,530 + CA265_RS00775 0.65 -1.1 186,569 + CA265_RS00775 0.71 +0.1 186,590 + CA265_RS00775 0.74 -0.6 186,590 + CA265_RS00775 0.74 +0.7 186,623 - CA265_RS00775 0.79 -1.1 186,639 + CA265_RS00775 0.82 -0.1 186,691 + -0.8 186,743 + +0.7 186,743 + -0.3 186,783 + -1.1 186,821 + -0.5 186,823 + +0.5 186,891 + CA265_RS00780 0.15 -0.6 187,093 - CA265_RS00780 0.55 -0.5 187,117 + CA265_RS00780 0.60 -1.0 187,118 - CA265_RS00780 0.60 -0.1 187,126 + CA265_RS00780 0.62 -0.4 187,127 - CA265_RS00780 0.62 -0.9 187,131 + CA265_RS00780 0.63 +0.9 187,132 - CA265_RS00780 0.63 +1.1 187,308 - +1.8 187,340 - -1.1 187,340 - +0.7 187,360 + -2.9 187,360 + -1.4 187,360 + -0.4 187,424 + +0.1 187,425 - -2.4 187,425 - +0.3 187,430 - +0.3 187,453 - +0.1 187,576 + -1.2 187,577 - -0.1 187,673 + -1.8 187,673 + -0.9 187,676 - -1.4 187,717 + CA265_RS00785 0.16 -1.8 187,718 - CA265_RS00785 0.17 -0.9 187,718 - CA265_RS00785 0.17 -1.6 187,718 - CA265_RS00785 0.17 -0.7
Or see this region's nucleotide sequence