Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19860

Experiment: CDM1 without Uracil

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Uracil
2,252,450	-		BBR_RS19850	0.85	-0.9
2,252,462	-		BBR_RS19850	0.85	-0.2
2,252,467	+		BBR_RS19850	0.86	-2.6
2,252,473	+		BBR_RS19850	0.86	-1.5
2,252,479	-		BBR_RS19850	0.86	+0.2
2,252,481	-		BBR_RS19850	0.86	-0.1
2,252,495	-		BBR_RS19850	0.87	-0.8
2,252,517	+		BBR_RS19850	0.88	-0.8
2,252,523	-		BBR_RS19850	0.89	-0.7
2,252,526	+		BBR_RS19850	0.89	-0.9
2,252,531	+		BBR_RS19850	0.89	-1.6
2,252,539	-		BBR_RS19850	0.89	+0.3
2,252,552	-				+0.9
2,252,570	+				-1.8
2,252,580	+				-2.6
2,252,582	+				-1.8
2,252,588	-				-0.8
2,252,590	+				-0.7
2,252,590	-				-0.1
2,252,598	-				-0.3
2,252,598	-				+0.8
2,252,610	+				+0.3
2,252,610	+				-2.3
2,252,610	+				-0.5
2,252,610	+				-0.5
2,252,615	+				-0.9
2,252,615	+				-0.4
2,252,618	-				+0.1
2,252,618	-				-0.1
2,252,618	-				-1.3
2,252,618	-				-2.6
2,252,618	-				-0.7
2,252,619	-				-1.0
2,252,637	+				-1.7
2,252,640	-				-0.6
2,252,640	-				-0.1
2,252,646	+				+0.2
2,252,648	-				+0.1
2,252,664	+				-2.4
2,252,664	+				-2.0
2,252,667	-				-0.3
2,252,669	+				-0.1
2,252,669	+				-0.7
2,252,672	-				+0.1
2,252,672	-				-0.9
2,252,672	-				-0.1
2,252,672	-				-0.3
2,252,672	-				-2.0
2,252,674	+				-2.5
2,252,677	-				+0.6
2,252,677	-				+0.8
2,252,677	-				-0.2
2,252,677	-				-0.4
2,252,677	-				-1.1
2,252,682	-				-2.6
2,252,688	-				-0.0
2,252,688	-				+0.2
2,252,703	-				+0.5
2,252,703	-				+1.1
2,252,703	-				+1.2
2,252,715	+				-1.6
2,252,715	+				-3.1
2,252,723	-				-0.2
2,252,723	-				+0.1
2,252,723	-				-1.7
2,252,734	+				-1.9
2,252,739	+				-3.0
2,252,739	+				+0.1
2,252,739	+				-3.0
2,252,742	-				+1.1
2,252,747	-				+1.5
2,252,747	-				-0.9
2,252,776	+				-0.0
2,252,786	-				-0.7
2,252,786	-				-0.0
2,252,789	-				+1.2
2,252,790	+				-3.6
2,252,793	-				-0.3
2,252,796	+				-3.1
2,252,796	+				+0.2
2,252,804	-				+0.1
2,252,804	-				-1.2
2,252,804	-				+1.3
2,252,819	-				-0.7
2,252,847	+				+1.1
2,252,847	+				+0.2
2,252,847	+				-2.5
2,252,847	+				-0.6
2,252,855	-				-1.4
2,252,855	-				-0.3
2,252,855	-				-0.5
2,252,865	-				-1.0
2,252,891	-				+1.0
2,252,894	+				-2.6
2,252,894	+				-2.3
2,252,894	+				-0.9
2,252,904	+				+0.5
2,252,912	-				-1.6
2,252,922	-				-0.3
2,252,938	-				-0.4
2,252,939	+				-1.0
2,252,939	+				-1.3
2,252,939	+				+1.8
2,252,939	+				-0.3
2,252,939	+				-0.2
2,252,947	-				-0.1
2,252,947	-				-1.5
2,252,947	-				-0.2
2,252,947	-				-0.1
2,252,947	-				+0.3
2,252,947	-				+0.2
2,252,947	-				+0.9
2,252,957	-				-0.5
2,252,959	+				-0.5
2,252,969	+				+0.0
2,252,969	+				+1.5
2,252,969	+				-0.5
2,252,969	+				+0.1
2,252,969	+				-0.1
2,252,969	+				-0.1
2,252,971	+				-2.4
2,252,971	+				-0.6
2,252,971	+				+1.2
2,252,971	+				+0.3
2,252,977	-				+0.2
2,252,977	-				+0.5
2,252,977	-				-3.3
2,252,977	-				-0.7
2,252,977	-				-1.6
2,252,977	-				+0.6
2,252,977	-				-1.2
2,252,977	-				+0.2
2,252,984	-				-1.5
2,253,020	+				+0.6
2,253,057	-				-0.5
2,253,073	+				-0.7
2,253,073	+				-0.6
2,253,073	+				-0.7
2,253,073	+				+0.1
2,253,081	-				-0.1
2,253,081	-				+0.6
2,253,166	+				+0.3
2,253,182	+		BBR_RS19855	0.12	-1.1
2,253,189	-		BBR_RS19855	0.16	-1.6
2,253,210	+		BBR_RS19855	0.28	-0.4
2,253,210	+		BBR_RS19855	0.28	-1.2
2,253,212	+		BBR_RS19855	0.29	-2.9
2,253,218	+		BBR_RS19855	0.33	-0.8
2,253,218	+		BBR_RS19855	0.33	+0.0
2,253,218	-		BBR_RS19855	0.33	-1.1
2,253,226	-		BBR_RS19855	0.37	+1.5
2,253,226	-		BBR_RS19855	0.37	-0.3
2,253,232	+		BBR_RS19855	0.41	-1.5
2,253,232	+		BBR_RS19855	0.41	-4.1
2,253,248	-		BBR_RS19855	0.50	-0.5
2,253,265	+		BBR_RS19855	0.60	-1.2
2,253,285	+		BBR_RS19855	0.72	-0.2
2,253,285	+		BBR_RS19855	0.72	-0.5
2,253,285	+		BBR_RS19855	0.72	-1.2
2,253,290	+		BBR_RS19855	0.75	-1.3
2,253,290	+		BBR_RS19855	0.75	-0.3
2,253,293	-		BBR_RS19855	0.77	-0.5
2,253,293	-		BBR_RS19855	0.77	-0.5
2,253,293	-		BBR_RS19855	0.77	+0.5
2,253,293	-		BBR_RS19855	0.77	-0.6
2,253,293	-		BBR_RS19855	0.77	+0.4
2,253,293	-		BBR_RS19855	0.77	-0.9
2,253,295	+		BBR_RS19855	0.78	+0.8
2,253,298	-		BBR_RS19855	0.80	+0.4
2,253,298	-		BBR_RS19855	0.80	+0.5
2,253,300	-		BBR_RS19855	0.81	-2.7
2,253,303	-		BBR_RS19855	0.82	-0.4
2,253,303	-		BBR_RS19855	0.82	-3.7
2,253,326	+				-2.3
2,253,329	-				-0.1
2,253,336	+				+0.2
2,253,336	+				-3.7
2,253,344	-				-2.5
2,253,344	-				+0.9
2,253,344	-				-1.1
2,253,351	-				-0.8
2,253,351	-				-1.2
2,253,351	-				-0.1
2,253,351	-				-2.2
2,253,351	-				+1.0
2,253,351	-				-0.5
2,253,353	+				-2.9
2,253,359	+				-2.9
2,253,359	+				-3.1
2,253,361	-				-0.6
2,253,385	-				+0.6
2,253,385	-				-1.8
2,253,400	-				+0.0
2,253,400	-				+0.3
2,253,400	-				-0.0
2,253,400	-				-1.2
2,253,418	-				+1.0
2,253,418	-				+0.9
2,253,455	-				+0.2
2,253,457	+				-1.3
2,253,480	-				+0.3
2,253,507	+				-2.8
2,253,507	-				-1.0
2,253,507	-				+1.3
2,253,515	-				+0.9
2,253,523	+				-1.9
2,253,538	-				-2.2
2,253,544	-				-2.4
2,253,544	-				-0.1
2,253,565	+				-1.5
2,253,582	+		BBR_RS19860	0.10	-2.9
2,253,582	+		BBR_RS19860	0.10	+0.8
2,253,590	-		BBR_RS19860	0.11	-0.4
2,253,590	-		BBR_RS19860	0.11	+0.3
2,253,590	-		BBR_RS19860	0.11	+0.9
2,253,594	+		BBR_RS19860	0.11	-3.1
2,253,650	-		BBR_RS19860	0.15	-1.1
2,253,677	+		BBR_RS19860	0.17	-1.0
2,253,682	+		BBR_RS19860	0.18	+0.2
2,253,690	-		BBR_RS19860	0.18	-0.7
2,253,705	-		BBR_RS19860	0.19	-1.6
2,253,705	-		BBR_RS19860	0.19	-2.8
2,253,718	+		BBR_RS19860	0.20	-3.6
2,253,737	+		BBR_RS19860	0.22	-2.2
2,253,787	+		BBR_RS19860	0.26	-0.2
2,253,790	-		BBR_RS19860	0.26	-1.1
2,253,795	-		BBR_RS19860	0.26	-0.4
2,253,805	+		BBR_RS19860	0.27	-1.0
2,253,813	-		BBR_RS19860	0.28	-0.3
2,253,831	+		BBR_RS19860	0.29	-1.1
2,253,839	-		BBR_RS19860	0.30	-1.0
2,253,839	-		BBR_RS19860	0.30	-0.6
2,253,841	+		BBR_RS19860	0.30	-0.5
2,253,841	+		BBR_RS19860	0.30	-3.1
2,253,841	+		BBR_RS19860	0.30	-3.1
2,253,841	-		BBR_RS19860	0.30	-0.3
2,253,841	-		BBR_RS19860	0.30	-1.8
2,253,849	-		BBR_RS19860	0.30	-0.8
2,253,849	-		BBR_RS19860	0.30	-1.4
2,253,849	-		BBR_RS19860	0.30	+0.6
2,253,849	-		BBR_RS19860	0.30	-1.2
2,253,849	-		BBR_RS19860	0.30	-0.1
2,253,849	-		BBR_RS19860	0.30	-1.0
2,253,872	-		BBR_RS19860	0.32	-0.2
2,253,878	+		BBR_RS19860	0.33	-1.5
2,253,893	-		BBR_RS19860	0.34	-1.0
2,253,911	+		BBR_RS19860	0.35	-0.7
2,253,919	-		BBR_RS19860	0.36	-4.2
2,253,919	-		BBR_RS19860	0.36	+0.9
2,253,929	-		BBR_RS19860	0.36	+1.8
2,253,958	-		BBR_RS19860	0.39	-0.7
2,253,978	+		BBR_RS19860	0.40	-0.3
2,254,026	-		BBR_RS19860	0.44	+0.9
2,254,093	+		BBR_RS19860	0.49	-1.5
2,254,098	-		BBR_RS19860	0.49	-1.9
2,254,101	+		BBR_RS19860	0.50	-0.8
2,254,112	+		BBR_RS19860	0.50	+0.5
2,254,125	+		BBR_RS19860	0.51	-1.0
2,254,130	-		BBR_RS19860	0.52	-1.9
2,254,130	-		BBR_RS19860	0.52	+0.2
2,254,130	-		BBR_RS19860	0.52	-2.6
2,254,166	-		BBR_RS19860	0.54	-2.0
2,254,168	-		BBR_RS19860	0.55	+0.1
2,254,168	-		BBR_RS19860	0.55	+0.4
2,254,168	-		BBR_RS19860	0.55	-1.8
2,254,170	+		BBR_RS19860	0.55	-1.9
2,254,178	-		BBR_RS19860	0.55	-0.1
2,254,178	-		BBR_RS19860	0.55	-1.9
2,254,178	-		BBR_RS19860	0.55	-1.9
2,254,183	-		BBR_RS19860	0.56	-0.6
2,254,200	-		BBR_RS19860	0.57	-2.4
2,254,247	-		BBR_RS19860	0.61	-0.3
2,254,251	-		BBR_RS19860	0.61	-1.1
2,254,251	-		BBR_RS19860	0.61	-1.4
2,254,295	-		BBR_RS19860	0.64	-1.0
2,254,295	-		BBR_RS19860	0.64	-1.7
2,254,308	+		BBR_RS19860	0.65	+0.2
2,254,316	-		BBR_RS19860	0.66	-0.6
2,254,316	-		BBR_RS19860	0.66	-0.6
2,254,316	-		BBR_RS19860	0.66	-0.5
2,254,316	-		BBR_RS19860	0.66	-1.2
2,254,316	-		BBR_RS19860	0.66	-1.2
2,254,333	+		BBR_RS19860	0.67	-0.6
2,254,366	-		BBR_RS19860	0.70	-1.0
2,254,387	+		BBR_RS19860	0.71	-2.1
2,254,415	-		BBR_RS19860	0.73	+0.3
2,254,421	+		BBR_RS19860	0.74	-0.2
2,254,428	-		BBR_RS19860	0.74	+1.5
2,254,429	-		BBR_RS19860	0.74	+0.2
2,254,446	+		BBR_RS19860	0.76	-2.8
2,254,457	+		BBR_RS19860	0.77	-3.7
2,254,468	+		BBR_RS19860	0.77	-2.8
2,254,468	+		BBR_RS19860	0.77	-1.2
2,254,476	-		BBR_RS19860	0.78	+0.0
2,254,476	-		BBR_RS19860	0.78	-0.8
2,254,485	-		BBR_RS19860	0.79	-0.6
2,254,511	-		BBR_RS19860	0.81	+0.1
2,254,511	-		BBR_RS19860	0.81	-1.2
2,254,511	-		BBR_RS19860	0.81	+0.7
2,254,511	-		BBR_RS19860	0.81	-1.0
2,254,542	-		BBR_RS19860	0.83	+1.4
2,254,542	-		BBR_RS19860	0.83	-0.3
2,254,563	-		BBR_RS19860	0.85	-1.5
2,254,568	-		BBR_RS19860	0.85	+0.6
2,254,573	-		BBR_RS19860	0.85	-1.8
2,254,575	-		BBR_RS19860	0.85	-1.1
2,254,575	-		BBR_RS19860	0.85	-1.9
2,254,576	+		BBR_RS19860	0.86	-1.1
2,254,584	-		BBR_RS19860	0.86	-0.8
2,254,601	-		BBR_RS19860	0.87	+0.8
2,254,611	+		BBR_RS19860	0.88	-1.4
2,254,611	+		BBR_RS19860	0.88	-0.0
2,254,630	+		BBR_RS19860	0.90	+0.3
2,254,630	+		BBR_RS19860	0.90	+0.6
2,254,644	+				+0.1
2,254,647	-				-2.1
2,254,652	-				+0.2
2,254,652	-				+0.4
2,254,652	-				-0.3
2,254,668	+				-4.0
2,254,946	+				-1.2
2,254,954	-				-2.0
2,254,980	+				+0.2
2,254,995	+				-0.8
2,254,995	+				-0.3
2,254,995	+				+0.4
2,254,995	+				+0.1
2,254,995	+				+0.2
2,254,995	+				+0.5
2,254,995	+				-3.9
2,255,003	-				-0.6
2,255,003	-				+0.6
2,255,003	-				-0.9
2,255,003	-				+1.1
2,255,003	-				+0.2
2,255,003	-				+0.3
2,255,005	-				+0.3
2,255,077	+				-1.5
2,255,077	+				-2.1
2,255,095	+				-0.2
2,255,099	-				-2.2
2,255,101	+				-1.8
2,255,103	-				+0.1
2,255,109	+				-1.1
2,255,109	+				-0.5
2,255,109	+				-1.1
2,255,109	+				-0.6
2,255,109	+				-0.4
2,255,109	+				-1.9
2,255,111	+				-0.0
2,255,116	+				-1.5
2,255,116	+				-1.4
2,255,117	-				+1.7
2,255,117	-				+0.4
2,255,117	-				+1.4
2,255,117	-				+0.2
2,255,117	-				+0.1
2,255,117	-				+1.0
2,255,117	-				-0.2
2,255,117	-				-0.9
2,255,117	-				+0.3
2,255,119	-				+0.5
2,255,124	-				+0.6
2,255,136	+				-0.6
2,255,143	+		BBR_RS19865	0.10	-1.6
2,255,151	-		BBR_RS19865	0.13	-0.4
2,255,176	-		BBR_RS19865	0.23	-0.4
2,255,176	-		BBR_RS19865	0.23	+1.0
2,255,182	+		BBR_RS19865	0.26	-2.2
2,255,182	+		BBR_RS19865	0.26	-2.1
2,255,190	+		BBR_RS19865	0.29	-0.5
2,255,190	-		BBR_RS19865	0.29	+0.1
2,255,190	-		BBR_RS19865	0.29	+0.4
2,255,198	-		BBR_RS19865	0.32	-1.0
2,255,210	-		BBR_RS19865	0.37	-0.3
2,255,239	-		BBR_RS19865	0.49	-0.2
2,255,239	-		BBR_RS19865	0.49	+1.4
2,255,239	-		BBR_RS19865	0.49	+1.6
2,255,291	-		BBR_RS19865	0.69	-0.1
2,255,313	+		BBR_RS19865	0.78	-0.4
2,255,313	+		BBR_RS19865	0.78	+0.3
2,255,319	-		BBR_RS19865	0.81	+0.1
2,255,319	-		BBR_RS19865	0.81	-0.2
2,255,319	-		BBR_RS19865	0.81	+0.1
2,255,321	-		BBR_RS19865	0.82	-2.8
2,255,326	+		BBR_RS19865	0.84	+1.7
2,255,328	+		BBR_RS19865	0.84	+0.6
2,255,328	+		BBR_RS19865	0.84	-0.1
2,255,331	-		BBR_RS19865	0.86	+0.5
2,255,334	-		BBR_RS19865	0.87	+1.3
2,255,336	-		BBR_RS19865	0.88	+0.4
2,255,370	+				+0.3
2,255,370	+				+0.7
2,255,370	+				+0.1
2,255,370	+				+0.5
2,255,370	+				-0.0
2,255,370	+				+0.7
2,255,370	+				+0.3
2,255,370	+				+0.5
2,255,370	+				+0.5
2,255,370	+				+0.9
2,255,370	+				+0.5
2,255,370	+				-0.0
2,255,370	+				+0.5
2,255,378	-				+0.1
2,255,378	-				-1.4
2,255,378	-				+0.2
2,255,378	-				-2.7
2,255,378	-				+1.0
2,255,378	-				+0.5
2,255,378	-				-0.7
2,255,378	-				+0.7
2,255,378	-				+0.1
2,255,382	+				+0.7
2,255,412	+				-0.2
2,255,414	+				+0.8
2,255,432	+				+0.5
2,255,441	+				+0.0
2,255,446	+				-0.9
2,255,448	+				-0.1
2,255,449	-				-1.4
2,255,454	-				+1.6
2,255,454	-				+0.1
2,255,456	-				-0.0
2,255,464	-				+0.0
2,255,464	-				-0.2
2,255,468	+				-1.6
2,255,470	+				+0.3
2,255,476	-				+2.4
2,255,476	-				-0.3
2,255,476	-				+0.1
2,255,478	-				-0.9
2,255,484	-				-1.2
2,255,493	+				+1.2
2,255,517	-		BBR_RS21130	0.21	+0.3
2,255,526	-		BBR_RS21130	0.25	+0.6
2,255,543	-		BBR_RS21130	0.33	-4.1
2,255,552	-		BBR_RS21130	0.38	+0.3
2,255,552	-		BBR_RS21130	0.38	-0.7
2,255,563	+		BBR_RS21130	0.43	-0.1
2,255,563	+		BBR_RS21130	0.43	+1.3
2,255,563	+		BBR_RS21130	0.43	-0.1
2,255,563	+		BBR_RS21130	0.43	+0.3
2,255,563	+		BBR_RS21130	0.43	-0.7
2,255,563	+		BBR_RS21130	0.43	-2.8
2,255,563	+		BBR_RS21130	0.43	+0.3
2,255,563	+		BBR_RS21130	0.43	+0.2
2,255,563	+		BBR_RS21130	0.43	-0.1
2,255,563	+		BBR_RS21130	0.43	+0.4
2,255,563	+		BBR_RS21130	0.43	+0.4
2,255,563	+		BBR_RS21130	0.43	-1.3
2,255,563	+		BBR_RS21130	0.43	+0.5
2,255,565	+		BBR_RS21130	0.44	+1.2
2,255,571	-		BBR_RS21130	0.46	+0.1
2,255,571	-		BBR_RS21130	0.46	+0.1
2,255,571	-		BBR_RS21130	0.46	-1.3
2,255,571	-		BBR_RS21130	0.46	-0.9
2,255,571	-		BBR_RS21130	0.46	-0.4
2,255,587	+		BBR_RS21130	0.54	+0.6
2,255,595	+		BBR_RS21130	0.58	+0.4
2,255,603	-		BBR_RS21130	0.62	+0.3
2,255,622	+		BBR_RS21130	0.70	+0.5
2,255,622	+		BBR_RS21130	0.70	-0.1
2,255,622	+		BBR_RS21130	0.70	+0.1
2,255,622	+		BBR_RS21130	0.70	+0.8
2,255,622	+		BBR_RS21130	0.70	+1.6
2,255,622	+		BBR_RS21130	0.70	+1.7
2,255,622	+		BBR_RS21130	0.70	-0.0
2,255,622	+		BBR_RS21130	0.70	+0.2
2,255,630	-		BBR_RS21130	0.74	-0.0
2,255,630	-		BBR_RS21130	0.74	-0.4
2,255,630	-		BBR_RS21130	0.74	-1.2
2,255,630	-		BBR_RS21130	0.74	+0.2
2,255,630	-		BBR_RS21130	0.74	+1.4
2,255,630	-		BBR_RS21130	0.74	+0.8
2,255,630	-		BBR_RS21130	0.74	+0.1
2,255,630	-		BBR_RS21130	0.74	-0.8
2,255,644	+		BBR_RS21130	0.81	+0.2
2,255,644	+		BBR_RS21130	0.81	+1.2
2,255,662	-		BBR_RS21130	0.89	-0.1
2,255,670	-				-3.6
2,255,704	-				-0.3
2,255,740	-				-0.9
2,255,740	-				+0.9
2,255,740	-				-1.1
2,255,740	-				+0.6
2,255,757	+				+1.7
2,255,760	-				+1.7
2,255,760	-				+1.6