Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12815

Experiment: CDM1 without Uracil

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12810 and BBR_RS12815 are separated by 306 nucleotidesBBR_RS12815 and BBR_RS12820 are separated by 301 nucleotides BBR_RS12810: BBR_RS12810 - hypothetical protein, at 622,787 to 624,178 _RS12810 BBR_RS12815: BBR_RS12815 - hypothetical protein, at 624,485 to 624,919 _RS12815 BBR_RS12820: BBR_RS12820 - hypothetical protein, at 625,221 to 626,657 _RS12820 Position (kb) 624 625Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 623.497 kb on + strand, within BBR_RS12810at 623.572 kb on - strand, within BBR_RS12810at 623.591 kb on + strand, within BBR_RS12810at 623.597 kb on + strand, within BBR_RS12810at 623.655 kb on + strand, within BBR_RS12810at 623.673 kb on + strand, within BBR_RS12810at 623.678 kb on - strand, within BBR_RS12810at 623.705 kb on - strand, within BBR_RS12810at 623.719 kb on - strand, within BBR_RS12810at 623.731 kb on - strand, within BBR_RS12810at 623.731 kb on - strand, within BBR_RS12810at 623.762 kb on - strand, within BBR_RS12810at 623.781 kb on - strand, within BBR_RS12810at 623.788 kb on - strand, within BBR_RS12810at 623.819 kb on + strand, within BBR_RS12810at 623.843 kb on + strand, within BBR_RS12810at 623.853 kb on + strand, within BBR_RS12810at 623.861 kb on - strand, within BBR_RS12810at 623.917 kb on + strand, within BBR_RS12810at 623.934 kb on + strand, within BBR_RS12810at 623.934 kb on + strand, within BBR_RS12810at 623.934 kb on + strand, within BBR_RS12810at 623.946 kb on + strand, within BBR_RS12810at 623.981 kb on - strand, within BBR_RS12810at 624.023 kb on - strand, within BBR_RS12810at 624.035 kb on + strand, within BBR_RS12810at 624.052 kb on + strandat 624.144 kb on - strandat 624.177 kb on - strandat 624.179 kb on + strandat 624.187 kb on - strandat 624.191 kb on + strandat 624.191 kb on + strandat 624.191 kb on + strandat 624.199 kb on - strandat 624.199 kb on - strandat 624.199 kb on - strandat 624.199 kb on - strandat 624.227 kb on + strandat 624.233 kb on - strandat 624.233 kb on - strandat 624.243 kb on - strandat 624.257 kb on - strandat 624.283 kb on - strandat 624.285 kb on + strandat 624.293 kb on - strandat 624.361 kb on + strandat 624.369 kb on - strandat 624.369 kb on - strandat 624.373 kb on + strandat 624.455 kb on + strandat 624.455 kb on + strandat 624.455 kb on - strandat 624.492 kb on + strandat 624.493 kb on - strandat 624.519 kb on - strandat 624.519 kb on - strandat 624.520 kb on - strandat 624.528 kb on - strandat 624.557 kb on + strand, within BBR_RS12815at 624.571 kb on + strand, within BBR_RS12815at 624.571 kb on + strand, within BBR_RS12815at 624.599 kb on + strand, within BBR_RS12815at 624.632 kb on - strand, within BBR_RS12815at 624.670 kb on + strand, within BBR_RS12815at 624.672 kb on - strand, within BBR_RS12815at 624.693 kb on + strand, within BBR_RS12815at 624.696 kb on - strand, within BBR_RS12815at 624.700 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.717 kb on + strand, within BBR_RS12815at 624.725 kb on - strand, within BBR_RS12815at 624.735 kb on - strand, within BBR_RS12815at 624.761 kb on + strand, within BBR_RS12815at 624.788 kb on - strand, within BBR_RS12815at 624.852 kb on - strand, within BBR_RS12815at 624.859 kb on - strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.881 kb on - strandat 624.881 kb on - strandat 624.899 kb on - strandat 624.928 kb on + strandat 624.936 kb on - strandat 624.936 kb on - strandat 625.094 kb on + strandat 625.095 kb on - strandat 625.095 kb on - strandat 625.100 kb on - strandat 625.117 kb on - strandat 625.137 kb on + strandat 625.148 kb on + strandat 625.168 kb on + strandat 625.168 kb on + strandat 625.221 kb on - strandat 625.257 kb on + strandat 625.347 kb on + strandat 625.353 kb on - strandat 625.400 kb on + strand, within BBR_RS12820at 625.401 kb on + strand, within BBR_RS12820at 625.447 kb on + strand, within BBR_RS12820at 625.475 kb on + strand, within BBR_RS12820at 625.505 kb on + strand, within BBR_RS12820at 625.560 kb on - strand, within BBR_RS12820at 625.662 kb on - strand, within BBR_RS12820at 625.705 kb on + strand, within BBR_RS12820at 625.708 kb on - strand, within BBR_RS12820at 625.727 kb on - strand, within BBR_RS12820at 625.727 kb on - strand, within BBR_RS12820at 625.734 kb on + strand, within BBR_RS12820at 625.734 kb on + strand, within BBR_RS12820at 625.760 kb on + strand, within BBR_RS12820at 625.773 kb on + strand, within BBR_RS12820at 625.798 kb on - strand, within BBR_RS12820at 625.806 kb on - strand, within BBR_RS12820at 625.812 kb on - strand, within BBR_RS12820at 625.831 kb on + strand, within BBR_RS12820at 625.831 kb on + strand, within BBR_RS12820at 625.876 kb on + strand, within BBR_RS12820at 625.883 kb on + strand, within BBR_RS12820

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Uracil
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623,497 + BBR_RS12810 0.51 -3.7
623,572 - BBR_RS12810 0.56 -3.3
623,591 + BBR_RS12810 0.58 -3.3
623,597 + BBR_RS12810 0.58 -1.5
623,655 + BBR_RS12810 0.62 -2.2
623,673 + BBR_RS12810 0.64 -3.4
623,678 - BBR_RS12810 0.64 -1.8
623,705 - BBR_RS12810 0.66 -0.4
623,719 - BBR_RS12810 0.67 -1.3
623,731 - BBR_RS12810 0.68 -2.7
623,731 - BBR_RS12810 0.68 -3.5
623,762 - BBR_RS12810 0.70 -1.1
623,781 - BBR_RS12810 0.71 -2.9
623,788 - BBR_RS12810 0.72 -2.0
623,819 + BBR_RS12810 0.74 -2.4
623,843 + BBR_RS12810 0.76 -2.4
623,853 + BBR_RS12810 0.77 -1.5
623,861 - BBR_RS12810 0.77 -2.1
623,917 + BBR_RS12810 0.81 -2.5
623,934 + BBR_RS12810 0.82 -2.9
623,934 + BBR_RS12810 0.82 -1.0
623,934 + BBR_RS12810 0.82 -3.0
623,946 + BBR_RS12810 0.83 +0.7
623,981 - BBR_RS12810 0.86 -2.8
624,023 - BBR_RS12810 0.89 -2.8
624,035 + BBR_RS12810 0.90 -0.9
624,052 + -1.0
624,144 - -3.3
624,177 - -1.9
624,179 + -3.5
624,187 - +0.1
624,191 + -2.8
624,191 + -3.4
624,191 + -2.8
624,199 - +0.5
624,199 - -0.3
624,199 - -2.3
624,199 - +0.7
624,227 + -2.7
624,233 - +1.4
624,233 - -1.4
624,243 - +1.2
624,257 - -2.0
624,283 - -0.2
624,285 + -1.5
624,293 - -2.2
624,361 + -4.2
624,369 - -2.9
624,369 - +1.2
624,373 + -0.4
624,455 + -0.2
624,455 + -3.7
624,455 - -0.0
624,492 + -0.6
624,493 - -1.2
624,519 - -0.6
624,519 - -0.0
624,520 - -0.4
624,528 - +0.1
624,557 + BBR_RS12815 0.17 -1.7
624,571 + BBR_RS12815 0.20 -1.6
624,571 + BBR_RS12815 0.20 -2.1
624,599 + BBR_RS12815 0.26 -2.5
624,632 - BBR_RS12815 0.34 -1.6
624,670 + BBR_RS12815 0.43 -1.1
624,672 - BBR_RS12815 0.43 -0.5
624,693 + BBR_RS12815 0.48 -3.3
624,696 - BBR_RS12815 0.49 -0.7
624,700 - BBR_RS12815 0.49 -0.9
624,701 - BBR_RS12815 0.50 -0.9
624,701 - BBR_RS12815 0.50 -0.9
624,701 - BBR_RS12815 0.50 -0.4
624,717 + BBR_RS12815 0.53 -1.8
624,725 - BBR_RS12815 0.55 -0.4
624,735 - BBR_RS12815 0.57 -2.6
624,761 + BBR_RS12815 0.63 -1.2
624,788 - BBR_RS12815 0.70 -1.6
624,852 - BBR_RS12815 0.84 -2.1
624,859 - BBR_RS12815 0.86 -0.7
624,873 + BBR_RS12815 0.89 -2.5
624,873 + BBR_RS12815 0.89 -3.5
624,873 + BBR_RS12815 0.89 -3.6
624,881 - -2.8
624,881 - -2.1
624,899 - -2.2
624,928 + -3.2
624,936 - +0.3
624,936 - -0.0
625,094 + +0.7
625,095 - +1.7
625,095 - -0.7
625,100 - -0.5
625,117 - +0.3
625,137 + +1.0
625,148 + -0.2
625,168 + -0.5
625,168 + -0.8
625,221 - -0.9
625,257 + -1.4
625,347 + -0.9
625,353 - -3.3
625,400 + BBR_RS12820 0.12 -2.5
625,401 + BBR_RS12820 0.13 +0.9
625,447 + BBR_RS12820 0.16 -2.6
625,475 + BBR_RS12820 0.18 +0.1
625,505 + BBR_RS12820 0.20 -0.8
625,560 - BBR_RS12820 0.24 -0.3
625,662 - BBR_RS12820 0.31 -1.9
625,705 + BBR_RS12820 0.34 +0.9
625,708 - BBR_RS12820 0.34 -0.6
625,727 - BBR_RS12820 0.35 -0.2
625,727 - BBR_RS12820 0.35 -1.7
625,734 + BBR_RS12820 0.36 +0.3
625,734 + BBR_RS12820 0.36 +0.3
625,760 + BBR_RS12820 0.38 -0.1
625,773 + BBR_RS12820 0.38 -0.0
625,798 - BBR_RS12820 0.40 -1.7
625,806 - BBR_RS12820 0.41 -3.0
625,812 - BBR_RS12820 0.41 -0.5
625,831 + BBR_RS12820 0.42 +1.2
625,831 + BBR_RS12820 0.42 -0.5
625,876 + BBR_RS12820 0.46 -0.4
625,883 + BBR_RS12820 0.46 -0.5

Or see this region's nucleotide sequence