Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25285 and AO356_25290 are separated by 127 nucleotides AO356_25290 and AO356_25295 are separated by 103 nucleotides AO356_25295 and AO356_25300 overlap by 4 nucleotides AO356_25300 and AO356_25305 overlap by 4 nucleotides AO356_25305 and AO356_25310 are separated by 21 nucleotides
AO356_25285: AO356_25285 - diguanylate cyclase, at 5,723,960 to 5,725,522
_25285
AO356_25290: AO356_25290 - metallophosphoesterase, at 5,725,650 to 5,726,108
_25290
AO356_25295: AO356_25295 - hypothetical protein, at 5,726,212 to 5,726,778
_25295
AO356_25300: AO356_25300 - hypothetical protein, at 5,726,775 to 5,727,314
_25300
AO356_25305: AO356_25305 - metal ABC transporter ATPase, at 5,727,311 to 5,727,616
_25305
AO356_25310: AO356_25310 - hypothetical protein, at 5,727,638 to 5,728,126
_25310
Position (kb) 5726
5727 Strain fitness (log2 ratio) -1
0
1
2 at 5725.291 kb on + strand, within AO356_25285 at 5725.291 kb on + strand, within AO356_25285 at 5725.292 kb on - strand, within AO356_25285 at 5725.292 kb on - strand, within AO356_25285 at 5725.529 kb on - strand at 5725.529 kb on - strand at 5725.570 kb on - strand at 5725.592 kb on + strand at 5725.794 kb on + strand, within AO356_25290 at 5725.794 kb on + strand, within AO356_25290 at 5725.794 kb on + strand, within AO356_25290 at 5725.794 kb on + strand, within AO356_25290 at 5725.795 kb on - strand, within AO356_25290 at 5725.795 kb on - strand, within AO356_25290 at 5725.795 kb on - strand, within AO356_25290 at 5726.160 kb on - strand at 5726.163 kb on + strand at 5726.163 kb on + strand at 5726.163 kb on + strand at 5726.163 kb on + strand at 5726.164 kb on - strand at 5726.270 kb on + strand, within AO356_25295 at 5726.270 kb on + strand, within AO356_25295 at 5726.271 kb on - strand, within AO356_25295 at 5726.271 kb on - strand, within AO356_25295 at 5726.271 kb on - strand, within AO356_25295 at 5726.275 kb on + strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.276 kb on - strand, within AO356_25295 at 5726.369 kb on - strand, within AO356_25295 at 5726.570 kb on + strand, within AO356_25295 at 5726.571 kb on - strand, within AO356_25295 at 5726.626 kb on + strand, within AO356_25295 at 5726.627 kb on - strand, within AO356_25295 at 5726.627 kb on - strand, within AO356_25295 at 5726.806 kb on + strand at 5727.177 kb on + strand, within AO356_25300 at 5727.177 kb on + strand, within AO356_25300 at 5727.177 kb on + strand, within AO356_25300 at 5727.178 kb on - strand, within AO356_25300 at 5727.205 kb on - strand, within AO356_25300 at 5727.205 kb on - strand, within AO356_25300 at 5727.393 kb on - strand, within AO356_25305 at 5727.393 kb on - strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.427 kb on + strand, within AO356_25305 at 5727.427 kb on + strand, within AO356_25305 at 5727.428 kb on - strand, within AO356_25305 at 5727.428 kb on - strand, within AO356_25305 at 5727.615 kb on - strand at 5727.677 kb on + strand at 5727.677 kb on + strand at 5727.678 kb on - strand at 5727.762 kb on + strand, within AO356_25310 at 5727.763 kb on - strand, within AO356_25310
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 5,725,291 + AO356_25285 0.85 -0.3 5,725,291 + AO356_25285 0.85 +0.1 5,725,292 - AO356_25285 0.85 +0.2 5,725,292 - AO356_25285 0.85 +0.5 5,725,529 - +0.1 5,725,529 - +1.4 5,725,570 - -0.8 5,725,592 + +0.0 5,725,794 + AO356_25290 0.31 +0.7 5,725,794 + AO356_25290 0.31 -1.3 5,725,794 + AO356_25290 0.31 -0.2 5,725,794 + AO356_25290 0.31 +0.0 5,725,795 - AO356_25290 0.32 -0.5 5,725,795 - AO356_25290 0.32 -0.0 5,725,795 - AO356_25290 0.32 -0.3 5,726,160 - +0.1 5,726,163 + +0.1 5,726,163 + +0.4 5,726,163 + -0.3 5,726,163 + -0.4 5,726,164 - +0.7 5,726,270 + AO356_25295 0.10 -0.3 5,726,270 + AO356_25295 0.10 +0.1 5,726,271 - AO356_25295 0.10 +0.2 5,726,271 - AO356_25295 0.10 -0.5 5,726,271 - AO356_25295 0.10 -0.5 5,726,275 + AO356_25295 0.11 +0.6 5,726,276 - AO356_25295 0.11 +0.6 5,726,276 - AO356_25295 0.11 -0.9 5,726,276 - AO356_25295 0.11 -1.1 5,726,276 - AO356_25295 0.11 +0.2 5,726,276 - AO356_25295 0.11 +0.1 5,726,369 - AO356_25295 0.28 +0.4 5,726,570 + AO356_25295 0.63 +0.3 5,726,571 - AO356_25295 0.63 +0.2 5,726,626 + AO356_25295 0.73 -0.9 5,726,627 - AO356_25295 0.73 +0.5 5,726,627 - AO356_25295 0.73 +0.3 5,726,806 + -0.8 5,727,177 + AO356_25300 0.74 -0.1 5,727,177 + AO356_25300 0.74 -0.1 5,727,177 + AO356_25300 0.74 +0.4 5,727,178 - AO356_25300 0.75 +0.1 5,727,205 - AO356_25300 0.80 +0.8 5,727,205 - AO356_25300 0.80 -0.5 5,727,393 - AO356_25305 0.27 -0.7 5,727,393 - AO356_25305 0.27 -0.1 5,727,396 + AO356_25305 0.28 -0.1 5,727,396 + AO356_25305 0.28 +0.3 5,727,396 + AO356_25305 0.28 +0.3 5,727,397 - AO356_25305 0.28 +0.6 5,727,397 - AO356_25305 0.28 +0.2 5,727,397 - AO356_25305 0.28 -0.5 5,727,427 + AO356_25305 0.38 -0.0 5,727,427 + AO356_25305 0.38 -0.5 5,727,428 - AO356_25305 0.38 +0.4 5,727,428 - AO356_25305 0.38 +0.2 5,727,615 - +1.5 5,727,677 + +0.3 5,727,677 + +0.5 5,727,678 - -0.4 5,727,762 + AO356_25310 0.25 +1.0 5,727,763 - AO356_25310 0.26 +2.0
Or see this region's nucleotide sequence