Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23580

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23575 and AO356_23580 are separated by 444 nucleotidesAO356_23580 and AO356_23585 are separated by 84 nucleotides AO356_23575: AO356_23575 - channel protein TolC, at 5,286,702 to 5,288,075 _23575 AO356_23580: AO356_23580 - LuxR family transcriptional regulator, at 5,288,520 to 5,289,239 _23580 AO356_23585: AO356_23585 - hypothetical protein, at 5,289,324 to 5,289,683 _23585 Position (kb) 5288 5289 5290Strain fitness (log2 ratio) -1 0 1at 5287.596 kb on + strand, within AO356_23575at 5287.597 kb on - strand, within AO356_23575at 5287.629 kb on + strand, within AO356_23575at 5287.629 kb on + strand, within AO356_23575at 5287.629 kb on + strand, within AO356_23575at 5287.629 kb on + strand, within AO356_23575at 5287.630 kb on - strand, within AO356_23575at 5287.630 kb on - strand, within AO356_23575at 5287.701 kb on + strand, within AO356_23575at 5287.701 kb on + strand, within AO356_23575at 5287.702 kb on - strand, within AO356_23575at 5287.777 kb on - strand, within AO356_23575at 5287.843 kb on + strand, within AO356_23575at 5287.843 kb on + strand, within AO356_23575at 5287.957 kb on - strandat 5288.041 kb on + strandat 5288.096 kb on + strandat 5288.164 kb on - strandat 5288.353 kb on - strandat 5288.363 kb on + strandat 5288.363 kb on + strandat 5288.363 kb on + strandat 5288.364 kb on - strandat 5288.385 kb on + strandat 5288.385 kb on + strandat 5288.386 kb on - strandat 5288.386 kb on - strandat 5288.386 kb on - strandat 5288.386 kb on - strandat 5288.386 kb on - strandat 5288.410 kb on - strandat 5288.519 kb on + strandat 5288.649 kb on + strand, within AO356_23580at 5288.649 kb on + strand, within AO356_23580at 5288.649 kb on + strand, within AO356_23580at 5288.650 kb on - strand, within AO356_23580at 5288.650 kb on - strand, within AO356_23580at 5288.650 kb on - strand, within AO356_23580at 5288.650 kb on - strand, within AO356_23580at 5288.651 kb on + strand, within AO356_23580at 5288.652 kb on - strand, within AO356_23580at 5288.793 kb on + strand, within AO356_23580at 5288.793 kb on + strand, within AO356_23580at 5288.793 kb on + strand, within AO356_23580at 5288.794 kb on - strand, within AO356_23580at 5288.794 kb on - strand, within AO356_23580at 5288.794 kb on - strand, within AO356_23580at 5289.063 kb on + strand, within AO356_23580at 5289.063 kb on + strand, within AO356_23580at 5289.064 kb on - strand, within AO356_23580at 5289.171 kb on + strandat 5289.171 kb on + strandat 5289.171 kb on + strandat 5289.172 kb on - strandat 5289.172 kb on - strandat 5289.191 kb on + strandat 5289.191 kb on + strandat 5289.272 kb on + strandat 5289.272 kb on + strandat 5289.273 kb on - strandat 5289.273 kb on - strandat 5289.577 kb on + strand, within AO356_23585at 5289.578 kb on - strand, within AO356_23585at 5289.578 kb on - strand, within AO356_23585at 5289.580 kb on + strand, within AO356_23585at 5289.749 kb on - strandat 5289.774 kb on - strandat 5289.816 kb on + strandat 5289.816 kb on + strandat 5289.816 kb on + strandat 5289.816 kb on + strandat 5289.817 kb on - strandat 5289.830 kb on + strandat 5289.830 kb on + strandat 5289.834 kb on - strandat 5289.882 kb on - strandat 5289.913 kb on - strandat 5289.918 kb on + strandat 5289.918 kb on + strandat 5289.918 kb on + strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.960 kb on + strandat 5289.988 kb on + strandat 5290.013 kb on + strandat 5290.014 kb on - strandat 5290.016 kb on + strandat 5290.016 kb on + strandat 5290.016 kb on + strandat 5290.016 kb on + strandat 5290.017 kb on - strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.021 kb on - strandat 5290.021 kb on - strandat 5290.021 kb on - strandat 5290.021 kb on - strandat 5290.051 kb on - strandat 5290.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,287,596 + AO356_23575 0.65 +0.2
5,287,597 - AO356_23575 0.65 +0.0
5,287,629 + AO356_23575 0.67 +0.0
5,287,629 + AO356_23575 0.67 -0.1
5,287,629 + AO356_23575 0.67 +0.7
5,287,629 + AO356_23575 0.67 +0.4
5,287,630 - AO356_23575 0.68 +0.2
5,287,630 - AO356_23575 0.68 +0.1
5,287,701 + AO356_23575 0.73 -0.1
5,287,701 + AO356_23575 0.73 +0.6
5,287,702 - AO356_23575 0.73 +0.9
5,287,777 - AO356_23575 0.78 -0.3
5,287,843 + AO356_23575 0.83 -1.0
5,287,843 + AO356_23575 0.83 -1.1
5,287,957 - -1.2
5,288,041 + +0.2
5,288,096 + +0.2
5,288,164 - +0.2
5,288,353 - -1.7
5,288,363 + -0.4
5,288,363 + -0.1
5,288,363 + -0.0
5,288,364 - +0.5
5,288,385 + -0.1
5,288,385 + -0.2
5,288,386 - +0.0
5,288,386 - -0.4
5,288,386 - -0.2
5,288,386 - +0.8
5,288,386 - -0.1
5,288,410 - +0.1
5,288,519 + -0.0
5,288,649 + AO356_23580 0.18 +1.6
5,288,649 + AO356_23580 0.18 +0.0
5,288,649 + AO356_23580 0.18 +0.2
5,288,650 - AO356_23580 0.18 -0.5
5,288,650 - AO356_23580 0.18 -0.2
5,288,650 - AO356_23580 0.18 +0.1
5,288,650 - AO356_23580 0.18 -0.2
5,288,651 + AO356_23580 0.18 +1.0
5,288,652 - AO356_23580 0.18 +0.5
5,288,793 + AO356_23580 0.38 -0.6
5,288,793 + AO356_23580 0.38 +1.1
5,288,793 + AO356_23580 0.38 +0.1
5,288,794 - AO356_23580 0.38 +0.0
5,288,794 - AO356_23580 0.38 -0.2
5,288,794 - AO356_23580 0.38 +0.6
5,289,063 + AO356_23580 0.75 +0.8
5,289,063 + AO356_23580 0.75 +0.2
5,289,064 - AO356_23580 0.76 -0.9
5,289,171 + -0.2
5,289,171 + -0.2
5,289,171 + +1.3
5,289,172 - +0.3
5,289,172 - -0.2
5,289,191 + -0.1
5,289,191 + -0.5
5,289,272 + +0.6
5,289,272 + +0.3
5,289,273 - +0.1
5,289,273 - +0.1
5,289,577 + AO356_23585 0.70 -0.1
5,289,578 - AO356_23585 0.71 +0.5
5,289,578 - AO356_23585 0.71 +0.3
5,289,580 + AO356_23585 0.71 +0.6
5,289,749 - -0.4
5,289,774 - +0.6
5,289,816 + +1.0
5,289,816 + -0.6
5,289,816 + -0.1
5,289,816 + -0.1
5,289,817 - -0.3
5,289,830 + +0.3
5,289,830 + -0.3
5,289,834 - -0.2
5,289,882 - +0.4
5,289,913 - +0.1
5,289,918 + +0.0
5,289,918 + +0.1
5,289,918 + +0.0
5,289,919 - +0.1
5,289,919 - -0.8
5,289,919 - +0.6
5,289,919 - -0.3
5,289,919 - +0.7
5,289,919 - -0.4
5,289,919 - +0.1
5,289,919 - -0.3
5,289,960 + +0.0
5,289,988 + -0.3
5,290,013 + +0.0
5,290,014 - -0.1
5,290,016 + +0.1
5,290,016 + +0.5
5,290,016 + -1.2
5,290,016 + +0.7
5,290,017 - +1.4
5,290,020 + -0.6
5,290,020 + +0.2
5,290,020 + -0.2
5,290,020 + +0.8
5,290,020 + -0.3
5,290,020 + -0.4
5,290,020 + +0.3
5,290,020 + +0.3
5,290,020 + -1.2
5,290,020 + -0.2
5,290,020 + -0.2
5,290,021 - +0.6
5,290,021 - -0.3
5,290,021 - -1.0
5,290,021 - -0.3
5,290,051 - +1.1
5,290,137 + +0.0

Or see this region's nucleotide sequence