Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15905

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15900 and AO356_15905 are separated by 163 nucleotidesAO356_15905 and AO356_15910 overlap by 4 nucleotides AO356_15900: AO356_15900 - hypothetical protein, at 3,600,733 to 3,600,951 _15900 AO356_15905: AO356_15905 - transcriptional regulator, at 3,601,115 to 3,602,461 _15905 AO356_15910: AO356_15910 - histidine kinase, at 3,602,458 to 3,604,047 _15910 Position (kb) 3601 3602 3603Strain fitness (log2 ratio) -2 -1 0 1 2at 3600.312 kb on + strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.313 kb on - strandat 3600.455 kb on - strandat 3600.650 kb on + strandat 3600.664 kb on + strandat 3600.664 kb on + strandat 3600.664 kb on + strandat 3600.664 kb on + strandat 3600.664 kb on + strandat 3600.665 kb on - strandat 3600.665 kb on - strandat 3600.665 kb on - strandat 3600.668 kb on + strandat 3600.691 kb on - strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.692 kb on + strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.693 kb on - strandat 3600.875 kb on + strand, within AO356_15900at 3600.875 kb on + strand, within AO356_15900at 3600.875 kb on + strand, within AO356_15900at 3600.876 kb on - strand, within AO356_15900at 3600.902 kb on + strand, within AO356_15900at 3600.902 kb on + strand, within AO356_15900at 3600.902 kb on + strand, within AO356_15900at 3600.903 kb on - strand, within AO356_15900at 3600.949 kb on + strandat 3600.950 kb on - strandat 3601.025 kb on + strandat 3601.025 kb on + strandat 3601.025 kb on + strandat 3601.025 kb on + strandat 3601.025 kb on + strandat 3601.025 kb on + strandat 3601.025 kb on + strandat 3601.025 kb on + strandat 3601.025 kb on + strandat 3601.026 kb on - strandat 3601.026 kb on - strandat 3601.026 kb on - strandat 3601.026 kb on - strandat 3601.026 kb on - strandat 3601.026 kb on - strandat 3601.026 kb on - strandat 3601.026 kb on - strandat 3601.026 kb on - strandat 3601.028 kb on - strandat 3601.028 kb on - strandat 3601.028 kb on - strandat 3601.028 kb on - strandat 3601.028 kb on - strandat 3601.090 kb on + strandat 3601.090 kb on + strandat 3601.090 kb on + strandat 3601.090 kb on + strandat 3601.090 kb on + strandat 3601.090 kb on + strandat 3601.090 kb on + strandat 3601.091 kb on - strandat 3601.091 kb on - strandat 3601.091 kb on - strandat 3601.091 kb on - strandat 3601.091 kb on - strandat 3601.091 kb on - strandat 3601.094 kb on + strandat 3601.095 kb on - strandat 3601.095 kb on - strandat 3601.095 kb on - strandat 3601.117 kb on - strandat 3601.143 kb on + strandat 3601.231 kb on + strandat 3601.231 kb on + strandat 3601.231 kb on + strandat 3601.232 kb on - strandat 3601.232 kb on - strandat 3601.232 kb on - strandat 3601.232 kb on - strandat 3601.251 kb on + strand, within AO356_15905at 3601.251 kb on + strand, within AO356_15905at 3601.252 kb on - strand, within AO356_15905at 3601.252 kb on - strand, within AO356_15905at 3601.252 kb on - strand, within AO356_15905at 3601.365 kb on + strand, within AO356_15905at 3601.365 kb on + strand, within AO356_15905at 3601.365 kb on + strand, within AO356_15905at 3601.365 kb on + strand, within AO356_15905at 3601.366 kb on - strand, within AO356_15905at 3601.366 kb on - strand, within AO356_15905at 3601.366 kb on - strand, within AO356_15905at 3601.366 kb on - strand, within AO356_15905at 3601.416 kb on + strand, within AO356_15905at 3601.448 kb on + strand, within AO356_15905at 3601.448 kb on + strand, within AO356_15905at 3601.449 kb on - strand, within AO356_15905at 3601.449 kb on - strand, within AO356_15905at 3601.449 kb on - strand, within AO356_15905at 3601.449 kb on - strand, within AO356_15905at 3601.573 kb on - strand, within AO356_15905at 3601.573 kb on - strand, within AO356_15905at 3601.575 kb on + strand, within AO356_15905at 3601.575 kb on + strand, within AO356_15905at 3601.575 kb on + strand, within AO356_15905at 3601.576 kb on - strand, within AO356_15905at 3601.576 kb on - strand, within AO356_15905at 3601.576 kb on - strand, within AO356_15905at 3601.576 kb on - strand, within AO356_15905at 3601.576 kb on - strand, within AO356_15905at 3601.576 kb on - strand, within AO356_15905at 3601.974 kb on + strand, within AO356_15905at 3601.974 kb on + strand, within AO356_15905at 3601.974 kb on + strand, within AO356_15905at 3601.974 kb on + strand, within AO356_15905at 3601.975 kb on - strand, within AO356_15905at 3601.975 kb on - strand, within AO356_15905at 3601.975 kb on - strand, within AO356_15905at 3601.975 kb on - strand, within AO356_15905at 3601.975 kb on - strand, within AO356_15905at 3602.202 kb on + strand, within AO356_15905at 3602.202 kb on + strand, within AO356_15905at 3602.455 kb on + strandat 3602.527 kb on + strandat 3602.567 kb on + strandat 3602.567 kb on + strandat 3602.568 kb on - strandat 3602.568 kb on - strandat 3602.601 kb on + strandat 3602.601 kb on + strandat 3602.776 kb on + strand, within AO356_15910at 3602.777 kb on - strand, within AO356_15910at 3602.777 kb on - strand, within AO356_15910at 3602.813 kb on + strand, within AO356_15910at 3602.813 kb on + strand, within AO356_15910at 3602.813 kb on + strand, within AO356_15910at 3602.813 kb on + strand, within AO356_15910at 3602.814 kb on - strand, within AO356_15910at 3602.814 kb on - strand, within AO356_15910at 3603.043 kb on + strand, within AO356_15910at 3603.043 kb on + strand, within AO356_15910at 3603.323 kb on + strand, within AO356_15910at 3603.324 kb on - strand, within AO356_15910at 3603.324 kb on - strand, within AO356_15910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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3,600,312 + -1.0
3,600,313 - +0.5
3,600,313 - +0.5
3,600,313 - +0.1
3,600,313 - +0.3
3,600,313 - -0.0
3,600,313 - +1.9
3,600,313 - -1.2
3,600,313 - +0.4
3,600,313 - -1.2
3,600,313 - +0.7
3,600,313 - +0.2
3,600,455 - -0.1
3,600,650 + +0.4
3,600,664 + +0.3
3,600,664 + +0.6
3,600,664 + -0.1
3,600,664 + +1.1
3,600,664 + +0.2
3,600,665 - +0.4
3,600,665 - +1.4
3,600,665 - -0.5
3,600,668 + +0.2
3,600,691 - -0.9
3,600,692 + -0.1
3,600,692 + -0.1
3,600,692 + -0.2
3,600,692 + -0.5
3,600,692 + +0.5
3,600,692 + +1.1
3,600,692 + +0.4
3,600,692 + +1.3
3,600,692 + -0.1
3,600,692 + +0.3
3,600,692 + -0.2
3,600,692 + -0.8
3,600,692 + +0.6
3,600,692 + +0.0
3,600,693 - -0.2
3,600,693 - -0.7
3,600,693 - -1.6
3,600,693 - +0.4
3,600,693 - -0.3
3,600,693 - +0.4
3,600,693 - +0.1
3,600,693 - +0.8
3,600,693 - +0.0
3,600,693 - +0.2
3,600,693 - +0.1
3,600,693 - +0.7
3,600,693 - -0.5
3,600,693 - +0.0
3,600,693 - +0.2
3,600,693 - -0.5
3,600,693 - -0.0
3,600,693 - +0.4
3,600,693 - +0.9
3,600,693 - -0.1
3,600,875 + AO356_15900 0.65 +0.5
3,600,875 + AO356_15900 0.65 -0.4
3,600,875 + AO356_15900 0.65 +0.8
3,600,876 - AO356_15900 0.65 +0.3
3,600,902 + AO356_15900 0.77 -0.3
3,600,902 + AO356_15900 0.77 +0.0
3,600,902 + AO356_15900 0.77 -0.3
3,600,903 - AO356_15900 0.78 -1.1
3,600,949 + -0.4
3,600,950 - -0.2
3,601,025 + -0.3
3,601,025 + +0.1
3,601,025 + -2.1
3,601,025 + +0.7
3,601,025 + +0.6
3,601,025 + -0.5
3,601,025 + +0.3
3,601,025 + -2.0
3,601,025 + -1.9
3,601,026 - +0.8
3,601,026 - -0.0
3,601,026 - +0.4
3,601,026 - +0.6
3,601,026 - -0.7
3,601,026 - +0.1
3,601,026 - -1.0
3,601,026 - -0.5
3,601,026 - +0.2
3,601,028 - +0.6
3,601,028 - +0.5
3,601,028 - +0.2
3,601,028 - -1.6
3,601,028 - +0.1
3,601,090 + -0.1
3,601,090 + +0.1
3,601,090 + -0.5
3,601,090 + +0.1
3,601,090 + +0.7
3,601,090 + +0.5
3,601,090 + -0.4
3,601,091 - -0.1
3,601,091 - +0.6
3,601,091 - +1.5
3,601,091 - -0.6
3,601,091 - -0.1
3,601,091 - +0.1
3,601,094 + -0.6
3,601,095 - -0.2
3,601,095 - +0.6
3,601,095 - +1.0
3,601,117 - +0.5
3,601,143 + +0.8
3,601,231 + -0.5
3,601,231 + +0.1
3,601,231 + -0.1
3,601,232 - -0.2
3,601,232 - -1.2
3,601,232 - +0.8
3,601,232 - +0.5
3,601,251 + AO356_15905 0.10 +0.5
3,601,251 + AO356_15905 0.10 +0.2
3,601,252 - AO356_15905 0.10 +1.6
3,601,252 - AO356_15905 0.10 -0.4
3,601,252 - AO356_15905 0.10 +1.1
3,601,365 + AO356_15905 0.19 +0.3
3,601,365 + AO356_15905 0.19 +0.4
3,601,365 + AO356_15905 0.19 -0.2
3,601,365 + AO356_15905 0.19 +0.2
3,601,366 - AO356_15905 0.19 -0.5
3,601,366 - AO356_15905 0.19 +0.4
3,601,366 - AO356_15905 0.19 -0.4
3,601,366 - AO356_15905 0.19 -0.7
3,601,416 + AO356_15905 0.22 +0.5
3,601,448 + AO356_15905 0.25 +0.4
3,601,448 + AO356_15905 0.25 +0.4
3,601,449 - AO356_15905 0.25 +1.2
3,601,449 - AO356_15905 0.25 +0.2
3,601,449 - AO356_15905 0.25 +0.5
3,601,449 - AO356_15905 0.25 -1.0
3,601,573 - AO356_15905 0.34 +0.6
3,601,573 - AO356_15905 0.34 +1.8
3,601,575 + AO356_15905 0.34 +1.2
3,601,575 + AO356_15905 0.34 +0.6
3,601,575 + AO356_15905 0.34 +0.1
3,601,576 - AO356_15905 0.34 -1.3
3,601,576 - AO356_15905 0.34 +1.0
3,601,576 - AO356_15905 0.34 -0.8
3,601,576 - AO356_15905 0.34 -0.1
3,601,576 - AO356_15905 0.34 -0.5
3,601,576 - AO356_15905 0.34 -0.9
3,601,974 + AO356_15905 0.64 +0.4
3,601,974 + AO356_15905 0.64 +0.3
3,601,974 + AO356_15905 0.64 -0.2
3,601,974 + AO356_15905 0.64 +0.6
3,601,975 - AO356_15905 0.64 +0.9
3,601,975 - AO356_15905 0.64 -0.0
3,601,975 - AO356_15905 0.64 -0.1
3,601,975 - AO356_15905 0.64 +0.2
3,601,975 - AO356_15905 0.64 -0.6
3,602,202 + AO356_15905 0.81 -0.0
3,602,202 + AO356_15905 0.81 +0.4
3,602,455 + +0.1
3,602,527 + +0.1
3,602,567 + +0.7
3,602,567 + -0.1
3,602,568 - -0.6
3,602,568 - -0.3
3,602,601 + +1.6
3,602,601 + +0.1
3,602,776 + AO356_15910 0.20 -1.3
3,602,777 - AO356_15910 0.20 +0.4
3,602,777 - AO356_15910 0.20 +0.4
3,602,813 + AO356_15910 0.22 +0.2
3,602,813 + AO356_15910 0.22 +0.1
3,602,813 + AO356_15910 0.22 +0.7
3,602,813 + AO356_15910 0.22 -0.4
3,602,814 - AO356_15910 0.22 +0.4
3,602,814 - AO356_15910 0.22 -0.2
3,603,043 + AO356_15910 0.37 +0.3
3,603,043 + AO356_15910 0.37 +0.7
3,603,323 + AO356_15910 0.54 -0.2
3,603,324 - AO356_15910 0.54 -0.1
3,603,324 - AO356_15910 0.54 +0.7

Or see this region's nucleotide sequence