Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS35975 and RR42_RS35980 are separated by 12 nucleotides RR42_RS35980 and RR42_RS35985 overlap by 8 nucleotides
RR42_RS35975: RR42_RS35975 - pilus assembly protein TadC, at 3,519,124 to 3,520,140
_RS35975
RR42_RS35980: RR42_RS35980 - membrane protein, at 3,520,153 to 3,521,079
_RS35980
RR42_RS35985: RR42_RS35985 - pilus assembly protein CpaF, at 3,521,072 to 3,522,388
_RS35985
Position (kb)
3520
3521
3522 Strain fitness (log2 ratio)
-1
0
1 at 3519.161 kb on - strand at 3519.248 kb on - strand, within RR42_RS35975 at 3519.354 kb on + strand, within RR42_RS35975 at 3519.767 kb on - strand, within RR42_RS35975 at 3520.129 kb on - strand at 3520.129 kb on - strand at 3520.129 kb on - strand at 3520.155 kb on - strand at 3520.176 kb on - strand at 3520.223 kb on - strand at 3520.262 kb on + strand, within RR42_RS35980 at 3520.263 kb on - strand, within RR42_RS35980 at 3520.263 kb on - strand, within RR42_RS35980 at 3520.488 kb on - strand, within RR42_RS35980 at 3520.488 kb on - strand, within RR42_RS35980 at 3520.646 kb on - strand, within RR42_RS35980 at 3520.722 kb on - strand, within RR42_RS35980 at 3520.796 kb on - strand, within RR42_RS35980 at 3520.931 kb on + strand, within RR42_RS35980 at 3521.073 kb on + strand at 3521.395 kb on - strand, within RR42_RS35985 at 3521.676 kb on + strand, within RR42_RS35985 at 3521.676 kb on + strand, within RR42_RS35985 at 3521.677 kb on - strand, within RR42_RS35985 at 3521.677 kb on - strand, within RR42_RS35985 at 3521.677 kb on - strand, within RR42_RS35985 at 3521.677 kb on - strand, within RR42_RS35985 at 3521.677 kb on - strand, within RR42_RS35985 at 3521.677 kb on - strand, within RR42_RS35985 at 3521.677 kb on - strand, within RR42_RS35985 at 3521.677 kb on - strand, within RR42_RS35985 at 3522.052 kb on - strand, within RR42_RS35985 at 3522.052 kb on - strand, within RR42_RS35985
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,519,161 - +0.8 3,519,248 - RR42_RS35975 0.12 -0.1 3,519,354 + RR42_RS35975 0.23 -1.0 3,519,767 - RR42_RS35975 0.63 -0.1 3,520,129 - +0.6 3,520,129 - +0.7 3,520,129 - -1.0 3,520,155 - -0.2 3,520,176 - -0.6 3,520,223 - +0.3 3,520,262 + RR42_RS35980 0.12 -1.1 3,520,263 - RR42_RS35980 0.12 -0.4 3,520,263 - RR42_RS35980 0.12 +0.0 3,520,488 - RR42_RS35980 0.36 -1.6 3,520,488 - RR42_RS35980 0.36 -0.4 3,520,646 - RR42_RS35980 0.53 -0.4 3,520,722 - RR42_RS35980 0.61 -0.7 3,520,796 - RR42_RS35980 0.69 -1.0 3,520,931 + RR42_RS35980 0.84 -1.0 3,521,073 + -0.5 3,521,395 - RR42_RS35985 0.25 +0.0 3,521,676 + RR42_RS35985 0.46 -1.0 3,521,676 + RR42_RS35985 0.46 +0.4 3,521,677 - RR42_RS35985 0.46 -0.5 3,521,677 - RR42_RS35985 0.46 -0.1 3,521,677 - RR42_RS35985 0.46 -0.2 3,521,677 - RR42_RS35985 0.46 +0.1 3,521,677 - RR42_RS35985 0.46 +0.5 3,521,677 - RR42_RS35985 0.46 -0.4 3,521,677 - RR42_RS35985 0.46 -0.4 3,521,677 - RR42_RS35985 0.46 -1.0 3,522,052 - RR42_RS35985 0.74 +0.1 3,522,052 - RR42_RS35985 0.74 +0.2
Or see this region's nucleotide sequence