Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35980

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS35975 and RR42_RS35980 are separated by 12 nucleotidesRR42_RS35980 and RR42_RS35985 overlap by 8 nucleotides RR42_RS35975: RR42_RS35975 - pilus assembly protein TadC, at 3,519,124 to 3,520,140 _RS35975 RR42_RS35980: RR42_RS35980 - membrane protein, at 3,520,153 to 3,521,079 _RS35980 RR42_RS35985: RR42_RS35985 - pilus assembly protein CpaF, at 3,521,072 to 3,522,388 _RS35985 Position (kb) 3520 3521 3522Strain fitness (log2 ratio) -1 0 1at 3519.161 kb on - strandat 3519.248 kb on - strand, within RR42_RS35975at 3519.354 kb on + strand, within RR42_RS35975at 3519.767 kb on - strand, within RR42_RS35975at 3520.129 kb on - strandat 3520.129 kb on - strandat 3520.129 kb on - strandat 3520.155 kb on - strandat 3520.176 kb on - strandat 3520.223 kb on - strandat 3520.262 kb on + strand, within RR42_RS35980at 3520.263 kb on - strand, within RR42_RS35980at 3520.263 kb on - strand, within RR42_RS35980at 3520.488 kb on - strand, within RR42_RS35980at 3520.488 kb on - strand, within RR42_RS35980at 3520.646 kb on - strand, within RR42_RS35980at 3520.722 kb on - strand, within RR42_RS35980at 3520.796 kb on - strand, within RR42_RS35980at 3520.931 kb on + strand, within RR42_RS35980at 3521.073 kb on + strandat 3521.395 kb on - strand, within RR42_RS35985at 3521.676 kb on + strand, within RR42_RS35985at 3521.676 kb on + strand, within RR42_RS35985at 3521.677 kb on - strand, within RR42_RS35985at 3521.677 kb on - strand, within RR42_RS35985at 3521.677 kb on - strand, within RR42_RS35985at 3521.677 kb on - strand, within RR42_RS35985at 3521.677 kb on - strand, within RR42_RS35985at 3521.677 kb on - strand, within RR42_RS35985at 3521.677 kb on - strand, within RR42_RS35985at 3521.677 kb on - strand, within RR42_RS35985at 3522.052 kb on - strand, within RR42_RS35985at 3522.052 kb on - strand, within RR42_RS35985

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,519,161 - +0.8
3,519,248 - RR42_RS35975 0.12 -0.1
3,519,354 + RR42_RS35975 0.23 -1.0
3,519,767 - RR42_RS35975 0.63 -0.1
3,520,129 - +0.6
3,520,129 - +0.7
3,520,129 - -1.0
3,520,155 - -0.2
3,520,176 - -0.6
3,520,223 - +0.3
3,520,262 + RR42_RS35980 0.12 -1.1
3,520,263 - RR42_RS35980 0.12 -0.4
3,520,263 - RR42_RS35980 0.12 +0.0
3,520,488 - RR42_RS35980 0.36 -1.6
3,520,488 - RR42_RS35980 0.36 -0.4
3,520,646 - RR42_RS35980 0.53 -0.4
3,520,722 - RR42_RS35980 0.61 -0.7
3,520,796 - RR42_RS35980 0.69 -1.0
3,520,931 + RR42_RS35980 0.84 -1.0
3,521,073 + -0.5
3,521,395 - RR42_RS35985 0.25 +0.0
3,521,676 + RR42_RS35985 0.46 -1.0
3,521,676 + RR42_RS35985 0.46 +0.4
3,521,677 - RR42_RS35985 0.46 -0.5
3,521,677 - RR42_RS35985 0.46 -0.1
3,521,677 - RR42_RS35985 0.46 -0.2
3,521,677 - RR42_RS35985 0.46 +0.1
3,521,677 - RR42_RS35985 0.46 +0.5
3,521,677 - RR42_RS35985 0.46 -0.4
3,521,677 - RR42_RS35985 0.46 -0.4
3,521,677 - RR42_RS35985 0.46 -1.0
3,522,052 - RR42_RS35985 0.74 +0.1
3,522,052 - RR42_RS35985 0.74 +0.2

Or see this region's nucleotide sequence