Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34675

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34670 and RR42_RS34675 are separated by 61 nucleotidesRR42_RS34675 and RR42_RS34680 are separated by 58 nucleotidesRR42_RS34680 and RR42_RS34685 are separated by 75 nucleotides RR42_RS34670: RR42_RS34670 - oxidoreductase, at 3,219,055 to 3,220,032 _RS34670 RR42_RS34675: RR42_RS34675 - NADPH:quinone reductase, at 3,220,094 to 3,220,978 _RS34675 RR42_RS34680: RR42_RS34680 - short-chain dehydrogenase, at 3,221,037 to 3,221,753 _RS34680 RR42_RS34685: RR42_RS34685 - catechol 1,2-dioxygenase, at 3,221,829 to 3,222,695 _RS34685 Position (kb) 3220 3221Strain fitness (log2 ratio) -2 -1 0 1at 3219.104 kb on + strandat 3219.137 kb on + strandat 3219.138 kb on - strandat 3219.138 kb on - strandat 3219.138 kb on - strandat 3219.251 kb on + strand, within RR42_RS34670at 3219.251 kb on + strand, within RR42_RS34670at 3219.251 kb on + strand, within RR42_RS34670at 3219.252 kb on - strand, within RR42_RS34670at 3219.252 kb on - strand, within RR42_RS34670at 3219.252 kb on - strand, within RR42_RS34670at 3219.252 kb on - strand, within RR42_RS34670at 3219.252 kb on - strand, within RR42_RS34670at 3219.252 kb on - strand, within RR42_RS34670at 3219.255 kb on + strand, within RR42_RS34670at 3219.255 kb on + strand, within RR42_RS34670at 3219.255 kb on + strand, within RR42_RS34670at 3219.256 kb on - strand, within RR42_RS34670at 3219.256 kb on - strand, within RR42_RS34670at 3219.256 kb on - strand, within RR42_RS34670at 3219.256 kb on - strand, within RR42_RS34670at 3219.365 kb on + strand, within RR42_RS34670at 3219.365 kb on + strand, within RR42_RS34670at 3219.386 kb on + strand, within RR42_RS34670at 3219.638 kb on + strand, within RR42_RS34670at 3219.684 kb on + strand, within RR42_RS34670at 3219.684 kb on + strand, within RR42_RS34670at 3219.685 kb on - strand, within RR42_RS34670at 3220.023 kb on + strandat 3220.075 kb on + strandat 3220.075 kb on + strandat 3220.075 kb on + strandat 3220.075 kb on + strandat 3220.075 kb on + strandat 3220.076 kb on - strandat 3220.076 kb on - strandat 3220.228 kb on - strand, within RR42_RS34675at 3220.786 kb on - strand, within RR42_RS34675at 3220.954 kb on + strandat 3220.955 kb on - strandat 3220.972 kb on + strandat 3221.233 kb on - strand, within RR42_RS34680at 3221.546 kb on - strand, within RR42_RS34680at 3221.826 kb on + strandat 3221.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,219,104 + -0.0
3,219,137 + +0.3
3,219,138 - +0.4
3,219,138 - -1.3
3,219,138 - +0.3
3,219,251 + RR42_RS34670 0.20 +0.2
3,219,251 + RR42_RS34670 0.20 +0.0
3,219,251 + RR42_RS34670 0.20 -0.2
3,219,252 - RR42_RS34670 0.20 +0.3
3,219,252 - RR42_RS34670 0.20 +0.3
3,219,252 - RR42_RS34670 0.20 +0.2
3,219,252 - RR42_RS34670 0.20 -2.2
3,219,252 - RR42_RS34670 0.20 -0.3
3,219,252 - RR42_RS34670 0.20 -0.0
3,219,255 + RR42_RS34670 0.20 -0.8
3,219,255 + RR42_RS34670 0.20 -0.6
3,219,255 + RR42_RS34670 0.20 +0.5
3,219,256 - RR42_RS34670 0.21 +0.1
3,219,256 - RR42_RS34670 0.21 -0.3
3,219,256 - RR42_RS34670 0.21 +0.8
3,219,256 - RR42_RS34670 0.21 -1.7
3,219,365 + RR42_RS34670 0.32 -0.1
3,219,365 + RR42_RS34670 0.32 +0.2
3,219,386 + RR42_RS34670 0.34 -0.1
3,219,638 + RR42_RS34670 0.60 -0.2
3,219,684 + RR42_RS34670 0.64 -0.2
3,219,684 + RR42_RS34670 0.64 -0.3
3,219,685 - RR42_RS34670 0.64 -0.7
3,220,023 + +0.3
3,220,075 + +0.2
3,220,075 + -0.5
3,220,075 + +0.7
3,220,075 + -0.3
3,220,075 + +0.1
3,220,076 - -0.7
3,220,076 - +0.6
3,220,228 - RR42_RS34675 0.15 -1.0
3,220,786 - RR42_RS34675 0.78 -0.7
3,220,954 + +0.2
3,220,955 - -0.1
3,220,972 + +0.2
3,221,233 - RR42_RS34680 0.27 +0.1
3,221,546 - RR42_RS34680 0.71 -0.2
3,221,826 + +1.2
3,221,897 - +0.7

Or see this region's nucleotide sequence