Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34670 and RR42_RS34675 are separated by 61 nucleotides RR42_RS34675 and RR42_RS34680 are separated by 58 nucleotides RR42_RS34680 and RR42_RS34685 are separated by 75 nucleotides
RR42_RS34670: RR42_RS34670 - oxidoreductase, at 3,219,055 to 3,220,032
_RS34670
RR42_RS34675: RR42_RS34675 - NADPH:quinone reductase, at 3,220,094 to 3,220,978
_RS34675
RR42_RS34680: RR42_RS34680 - short-chain dehydrogenase, at 3,221,037 to 3,221,753
_RS34680
RR42_RS34685: RR42_RS34685 - catechol 1,2-dioxygenase, at 3,221,829 to 3,222,695
_RS34685
Position (kb)
3220
3221 Strain fitness (log2 ratio)
-2
-1
0
1 at 3219.104 kb on + strand at 3219.137 kb on + strand at 3219.138 kb on - strand at 3219.138 kb on - strand at 3219.138 kb on - strand at 3219.251 kb on + strand, within RR42_RS34670 at 3219.251 kb on + strand, within RR42_RS34670 at 3219.251 kb on + strand, within RR42_RS34670 at 3219.252 kb on - strand, within RR42_RS34670 at 3219.252 kb on - strand, within RR42_RS34670 at 3219.252 kb on - strand, within RR42_RS34670 at 3219.252 kb on - strand, within RR42_RS34670 at 3219.252 kb on - strand, within RR42_RS34670 at 3219.252 kb on - strand, within RR42_RS34670 at 3219.255 kb on + strand, within RR42_RS34670 at 3219.255 kb on + strand, within RR42_RS34670 at 3219.255 kb on + strand, within RR42_RS34670 at 3219.256 kb on - strand, within RR42_RS34670 at 3219.256 kb on - strand, within RR42_RS34670 at 3219.256 kb on - strand, within RR42_RS34670 at 3219.256 kb on - strand, within RR42_RS34670 at 3219.365 kb on + strand, within RR42_RS34670 at 3219.365 kb on + strand, within RR42_RS34670 at 3219.386 kb on + strand, within RR42_RS34670 at 3219.638 kb on + strand, within RR42_RS34670 at 3219.684 kb on + strand, within RR42_RS34670 at 3219.684 kb on + strand, within RR42_RS34670 at 3219.685 kb on - strand, within RR42_RS34670 at 3220.023 kb on + strand at 3220.075 kb on + strand at 3220.075 kb on + strand at 3220.075 kb on + strand at 3220.075 kb on + strand at 3220.075 kb on + strand at 3220.076 kb on - strand at 3220.076 kb on - strand at 3220.228 kb on - strand, within RR42_RS34675 at 3220.786 kb on - strand, within RR42_RS34675 at 3220.954 kb on + strand at 3220.955 kb on - strand at 3220.972 kb on + strand at 3221.233 kb on - strand, within RR42_RS34680 at 3221.546 kb on - strand, within RR42_RS34680 at 3221.826 kb on + strand at 3221.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,219,104 + -0.0 3,219,137 + +0.3 3,219,138 - +0.4 3,219,138 - -1.3 3,219,138 - +0.3 3,219,251 + RR42_RS34670 0.20 +0.2 3,219,251 + RR42_RS34670 0.20 +0.0 3,219,251 + RR42_RS34670 0.20 -0.2 3,219,252 - RR42_RS34670 0.20 +0.3 3,219,252 - RR42_RS34670 0.20 +0.3 3,219,252 - RR42_RS34670 0.20 +0.2 3,219,252 - RR42_RS34670 0.20 -2.2 3,219,252 - RR42_RS34670 0.20 -0.3 3,219,252 - RR42_RS34670 0.20 -0.0 3,219,255 + RR42_RS34670 0.20 -0.8 3,219,255 + RR42_RS34670 0.20 -0.6 3,219,255 + RR42_RS34670 0.20 +0.5 3,219,256 - RR42_RS34670 0.21 +0.1 3,219,256 - RR42_RS34670 0.21 -0.3 3,219,256 - RR42_RS34670 0.21 +0.8 3,219,256 - RR42_RS34670 0.21 -1.7 3,219,365 + RR42_RS34670 0.32 -0.1 3,219,365 + RR42_RS34670 0.32 +0.2 3,219,386 + RR42_RS34670 0.34 -0.1 3,219,638 + RR42_RS34670 0.60 -0.2 3,219,684 + RR42_RS34670 0.64 -0.2 3,219,684 + RR42_RS34670 0.64 -0.3 3,219,685 - RR42_RS34670 0.64 -0.7 3,220,023 + +0.3 3,220,075 + +0.2 3,220,075 + -0.5 3,220,075 + +0.7 3,220,075 + -0.3 3,220,075 + +0.1 3,220,076 - -0.7 3,220,076 - +0.6 3,220,228 - RR42_RS34675 0.15 -1.0 3,220,786 - RR42_RS34675 0.78 -0.7 3,220,954 + +0.2 3,220,955 - -0.1 3,220,972 + +0.2 3,221,233 - RR42_RS34680 0.27 +0.1 3,221,546 - RR42_RS34680 0.71 -0.2 3,221,826 + +1.2 3,221,897 - +0.7
Or see this region's nucleotide sequence