Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31975

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31970 and RR42_RS31975 are separated by 319 nucleotidesRR42_RS31975 and RR42_RS31980 are separated by 1 nucleotides RR42_RS31970: RR42_RS31970 - hypothetical protein, at 2,549,262 to 2,550,764 _RS31970 RR42_RS31975: RR42_RS31975 - fatty acid--CoA ligase, at 2,551,084 to 2,552,724 _RS31975 RR42_RS31980: RR42_RS31980 - 3-ketosteroid-9-alpha-hydroxylase, at 2,552,726 to 2,553,754 _RS31980 Position (kb) 2551 2552 2553Strain fitness (log2 ratio) -3 -2 -1 0 1at 2550.499 kb on - strand, within RR42_RS31970at 2550.514 kb on - strand, within RR42_RS31970at 2550.699 kb on + strandat 2550.699 kb on + strandat 2550.700 kb on - strandat 2550.775 kb on + strandat 2550.780 kb on - strandat 2550.811 kb on + strandat 2550.811 kb on + strandat 2550.812 kb on - strandat 2550.812 kb on - strandat 2550.993 kb on - strandat 2550.993 kb on - strandat 2551.051 kb on - strandat 2551.103 kb on + strandat 2551.103 kb on + strandat 2551.107 kb on + strandat 2551.107 kb on + strandat 2551.108 kb on - strandat 2551.173 kb on - strandat 2551.182 kb on + strandat 2551.371 kb on + strand, within RR42_RS31975at 2551.398 kb on + strand, within RR42_RS31975at 2551.401 kb on - strand, within RR42_RS31975at 2551.514 kb on + strand, within RR42_RS31975at 2551.515 kb on - strand, within RR42_RS31975at 2552.621 kb on - strandat 2553.128 kb on - strand, within RR42_RS31980at 2553.128 kb on - strand, within RR42_RS31980at 2553.149 kb on - strand, within RR42_RS31980

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,550,499 - RR42_RS31970 0.82 +0.3
2,550,514 - RR42_RS31970 0.83 +0.5
2,550,699 + +0.0
2,550,699 + -0.7
2,550,700 - +0.3
2,550,775 + -2.5
2,550,780 - +0.3
2,550,811 + -0.2
2,550,811 + -0.4
2,550,812 - -0.1
2,550,812 - +0.3
2,550,993 - -0.5
2,550,993 - -0.6
2,551,051 - +0.2
2,551,103 + +0.2
2,551,103 + -0.0
2,551,107 + +0.5
2,551,107 + +1.5
2,551,108 - -3.2
2,551,173 - +0.7
2,551,182 + +1.4
2,551,371 + RR42_RS31975 0.17 -1.3
2,551,398 + RR42_RS31975 0.19 -1.3
2,551,401 - RR42_RS31975 0.19 +1.3
2,551,514 + RR42_RS31975 0.26 +0.7
2,551,515 - RR42_RS31975 0.26 -1.4
2,552,621 - +0.2
2,553,128 - RR42_RS31980 0.39 -2.1
2,553,128 - RR42_RS31980 0.39 -0.3
2,553,149 - RR42_RS31980 0.41 -1.3

Or see this region's nucleotide sequence