Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26620

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26610 and RR42_RS26615 are separated by 69 nucleotidesRR42_RS26615 and RR42_RS26620 are separated by 171 nucleotidesRR42_RS26620 and RR42_RS26625 are separated by 160 nucleotides RR42_RS26610: RR42_RS26610 - hypothetical protein, at 1,324,410 to 1,325,219 _RS26610 RR42_RS26615: RR42_RS26615 - hypothetical protein, at 1,325,289 to 1,325,756 _RS26615 RR42_RS26620: RR42_RS26620 - hypothetical protein, at 1,325,928 to 1,326,473 _RS26620 RR42_RS26625: RR42_RS26625 - hypothetical protein, at 1,326,634 to 1,327,464 _RS26625 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -2 -1 0 1at 1324.957 kb on + strand, within RR42_RS26610at 1325.101 kb on + strand, within RR42_RS26610at 1325.102 kb on - strand, within RR42_RS26610at 1325.140 kb on - strandat 1325.259 kb on + strandat 1325.259 kb on + strandat 1325.290 kb on + strandat 1325.290 kb on + strandat 1325.291 kb on - strandat 1325.292 kb on + strandat 1325.292 kb on + strandat 1325.292 kb on + strandat 1325.293 kb on - strandat 1325.293 kb on - strandat 1325.322 kb on - strandat 1325.368 kb on + strand, within RR42_RS26615at 1325.370 kb on + strand, within RR42_RS26615at 1325.371 kb on - strand, within RR42_RS26615at 1325.681 kb on + strand, within RR42_RS26615at 1325.682 kb on - strand, within RR42_RS26615at 1325.683 kb on + strand, within RR42_RS26615at 1325.683 kb on + strand, within RR42_RS26615at 1325.684 kb on - strand, within RR42_RS26615at 1325.684 kb on - strand, within RR42_RS26615at 1325.684 kb on - strand, within RR42_RS26615at 1325.684 kb on - strand, within RR42_RS26615at 1325.684 kb on - strand, within RR42_RS26615at 1325.684 kb on - strand, within RR42_RS26615at 1325.684 kb on - strand, within RR42_RS26615at 1325.686 kb on - strand, within RR42_RS26615at 1325.830 kb on + strandat 1325.868 kb on + strandat 1325.869 kb on - strandat 1325.869 kb on - strandat 1325.882 kb on + strandat 1325.883 kb on - strandat 1325.887 kb on - strandat 1326.040 kb on + strand, within RR42_RS26620at 1326.061 kb on + strand, within RR42_RS26620at 1326.062 kb on - strand, within RR42_RS26620at 1326.062 kb on - strand, within RR42_RS26620at 1326.221 kb on - strand, within RR42_RS26620at 1326.506 kb on - strandat 1326.526 kb on - strandat 1326.539 kb on - strandat 1326.562 kb on - strandat 1326.673 kb on + strandat 1326.673 kb on + strandat 1326.712 kb on + strandat 1326.712 kb on + strandat 1327.059 kb on + strand, within RR42_RS26625at 1327.060 kb on - strand, within RR42_RS26625at 1327.060 kb on - strand, within RR42_RS26625at 1327.061 kb on + strand, within RR42_RS26625at 1327.062 kb on - strand, within RR42_RS26625at 1327.062 kb on - strand, within RR42_RS26625at 1327.062 kb on - strand, within RR42_RS26625at 1327.062 kb on - strand, within RR42_RS26625at 1327.193 kb on - strand, within RR42_RS26625at 1327.286 kb on + strand, within RR42_RS26625at 1327.286 kb on + strand, within RR42_RS26625at 1327.287 kb on - strand, within RR42_RS26625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,324,957 + RR42_RS26610 0.68 -0.0
1,325,101 + RR42_RS26610 0.85 +0.3
1,325,102 - RR42_RS26610 0.85 +0.3
1,325,140 - -0.7
1,325,259 + +0.3
1,325,259 + -0.3
1,325,290 + -2.4
1,325,290 + -0.6
1,325,291 - -0.6
1,325,292 + +1.0
1,325,292 + +0.5
1,325,292 + +0.1
1,325,293 - -0.6
1,325,293 - -0.5
1,325,322 - -0.6
1,325,368 + RR42_RS26615 0.17 -0.5
1,325,370 + RR42_RS26615 0.17 +0.1
1,325,371 - RR42_RS26615 0.18 -0.1
1,325,681 + RR42_RS26615 0.84 -0.3
1,325,682 - RR42_RS26615 0.84 +0.5
1,325,683 + RR42_RS26615 0.84 -0.5
1,325,683 + RR42_RS26615 0.84 -0.6
1,325,684 - RR42_RS26615 0.84 -0.3
1,325,684 - RR42_RS26615 0.84 +0.2
1,325,684 - RR42_RS26615 0.84 +1.1
1,325,684 - RR42_RS26615 0.84 +0.1
1,325,684 - RR42_RS26615 0.84 +0.7
1,325,684 - RR42_RS26615 0.84 +0.1
1,325,684 - RR42_RS26615 0.84 +0.1
1,325,686 - RR42_RS26615 0.85 -0.3
1,325,830 + +1.2
1,325,868 + -0.4
1,325,869 - -0.2
1,325,869 - -0.2
1,325,882 + -0.2
1,325,883 - -0.5
1,325,887 - -1.3
1,326,040 + RR42_RS26620 0.21 +0.3
1,326,061 + RR42_RS26620 0.24 +0.7
1,326,062 - RR42_RS26620 0.25 -0.2
1,326,062 - RR42_RS26620 0.25 -0.5
1,326,221 - RR42_RS26620 0.54 +1.4
1,326,506 - +0.6
1,326,526 - +0.4
1,326,539 - -0.4
1,326,562 - -0.5
1,326,673 + +0.3
1,326,673 + +0.3
1,326,712 + -0.7
1,326,712 + +0.6
1,327,059 + RR42_RS26625 0.51 +0.2
1,327,060 - RR42_RS26625 0.51 -0.1
1,327,060 - RR42_RS26625 0.51 +0.1
1,327,061 + RR42_RS26625 0.51 -0.3
1,327,062 - RR42_RS26625 0.52 -0.2
1,327,062 - RR42_RS26625 0.52 +0.0
1,327,062 - RR42_RS26625 0.52 -0.3
1,327,062 - RR42_RS26625 0.52 -0.0
1,327,193 - RR42_RS26625 0.67 -0.4
1,327,286 + RR42_RS26625 0.78 +0.1
1,327,286 + RR42_RS26625 0.78 +0.2
1,327,287 - RR42_RS26625 0.79 +0.3

Or see this region's nucleotide sequence