Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26505 and RR42_RS26510 are separated by 112 nucleotides RR42_RS26510 and RR42_RS26515 are separated by 114 nucleotides
RR42_RS26505: RR42_RS26505 - carbon monoxide dehydrogenase, at 1,302,666 to 1,303,835
_RS26505
RR42_RS26510: RR42_RS26510 - hypothetical protein, at 1,303,948 to 1,304,307
_RS26510
RR42_RS26515: RR42_RS26515 - hypothetical protein, at 1,304,422 to 1,304,874
_RS26515
Position (kb)
1303
1304
1305 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1302.967 kb on - strand, within RR42_RS26505 at 1303.080 kb on + strand, within RR42_RS26505 at 1303.081 kb on - strand, within RR42_RS26505 at 1303.081 kb on - strand, within RR42_RS26505 at 1303.081 kb on - strand, within RR42_RS26505 at 1303.081 kb on - strand, within RR42_RS26505 at 1303.554 kb on - strand, within RR42_RS26505 at 1303.560 kb on + strand, within RR42_RS26505 at 1303.560 kb on + strand, within RR42_RS26505 at 1303.561 kb on - strand, within RR42_RS26505 at 1303.614 kb on + strand, within RR42_RS26505 at 1303.615 kb on - strand, within RR42_RS26505 at 1303.615 kb on - strand, within RR42_RS26505 at 1303.873 kb on + strand at 1303.874 kb on - strand at 1303.874 kb on - strand at 1304.300 kb on + strand at 1304.300 kb on + strand at 1304.301 kb on - strand at 1304.394 kb on + strand at 1304.506 kb on - strand, within RR42_RS26515 at 1304.752 kb on + strand, within RR42_RS26515 at 1305.015 kb on + strand at 1305.044 kb on - strand at 1305.044 kb on - strand at 1305.191 kb on + strand at 1305.233 kb on + strand at 1305.234 kb on - strand at 1305.234 kb on - strand at 1305.239 kb on + strand at 1305.240 kb on - strand at 1305.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,302,967 - RR42_RS26505 0.26 -0.3 1,303,080 + RR42_RS26505 0.35 -0.1 1,303,081 - RR42_RS26505 0.35 -0.7 1,303,081 - RR42_RS26505 0.35 -0.3 1,303,081 - RR42_RS26505 0.35 -0.1 1,303,081 - RR42_RS26505 0.35 -0.1 1,303,554 - RR42_RS26505 0.76 -1.7 1,303,560 + RR42_RS26505 0.76 -0.4 1,303,560 + RR42_RS26505 0.76 +3.5 1,303,561 - RR42_RS26505 0.76 -2.5 1,303,614 + RR42_RS26505 0.81 -0.3 1,303,615 - RR42_RS26505 0.81 +0.3 1,303,615 - RR42_RS26505 0.81 +0.1 1,303,873 + +0.5 1,303,874 - -0.3 1,303,874 - -0.7 1,304,300 + +0.6 1,304,300 + -0.2 1,304,301 - -2.4 1,304,394 + +0.5 1,304,506 - RR42_RS26515 0.19 -0.9 1,304,752 + RR42_RS26515 0.73 -0.6 1,305,015 + +0.7 1,305,044 - +0.1 1,305,044 - +0.5 1,305,191 + -1.1 1,305,233 + -0.5 1,305,234 - +0.1 1,305,234 - +0.0 1,305,239 + +0.1 1,305,240 - +0.3 1,305,240 - -0.4
Or see this region's nucleotide sequence