Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26450

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26440 and RR42_RS26445 overlap by 1 nucleotidesRR42_RS26445 and RR42_RS26450 are separated by 12 nucleotidesRR42_RS26450 and RR42_RS26455 are separated by 44 nucleotidesRR42_RS26455 and RR42_RS26460 are separated by 46 nucleotides RR42_RS26440: RR42_RS26440 - ABC transporter permease, at 1,288,058 to 1,289,116 _RS26440 RR42_RS26445: RR42_RS26445 - ABC transporter permease, at 1,289,116 to 1,290,000 _RS26445 RR42_RS26450: RR42_RS26450 - histidinol dehydrogenase, at 1,290,013 to 1,290,723 _RS26450 RR42_RS26455: RR42_RS26455 - amino acid ABC transporter ATP-binding protein, at 1,290,768 to 1,291,544 _RS26455 RR42_RS26460: RR42_RS26460 - ABC transporter permease, at 1,291,591 to 1,292,775 _RS26460 Position (kb) 1290 1291Strain fitness (log2 ratio) -3 -2 -1 0 1at 1289.118 kb on - strandat 1289.204 kb on + strandat 1289.507 kb on + strand, within RR42_RS26445at 1289.507 kb on + strand, within RR42_RS26445at 1289.508 kb on - strand, within RR42_RS26445at 1289.699 kb on + strand, within RR42_RS26445at 1289.799 kb on - strand, within RR42_RS26445at 1289.881 kb on - strand, within RR42_RS26445at 1289.881 kb on - strand, within RR42_RS26445at 1289.928 kb on - strandat 1289.928 kb on - strandat 1289.984 kb on - strandat 1290.014 kb on + strandat 1290.105 kb on - strand, within RR42_RS26450at 1290.164 kb on + strand, within RR42_RS26450at 1290.366 kb on - strand, within RR42_RS26450at 1290.366 kb on - strand, within RR42_RS26450at 1290.695 kb on + strandat 1290.696 kb on - strandat 1290.808 kb on + strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.956 kb on + strand, within RR42_RS26455at 1291.664 kb on + strandat 1291.721 kb on + strand, within RR42_RS26460

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,289,118 - -0.9
1,289,204 + +0.3
1,289,507 + RR42_RS26445 0.44 +0.3
1,289,507 + RR42_RS26445 0.44 -0.2
1,289,508 - RR42_RS26445 0.44 +0.3
1,289,699 + RR42_RS26445 0.66 -0.1
1,289,799 - RR42_RS26445 0.77 -0.9
1,289,881 - RR42_RS26445 0.86 -0.7
1,289,881 - RR42_RS26445 0.86 -0.7
1,289,928 - +0.2
1,289,928 - -0.0
1,289,984 - -0.7
1,290,014 + +0.1
1,290,105 - RR42_RS26450 0.13 -1.9
1,290,164 + RR42_RS26450 0.21 -0.4
1,290,366 - RR42_RS26450 0.50 -0.4
1,290,366 - RR42_RS26450 0.50 -1.3
1,290,695 + -0.4
1,290,696 - -0.7
1,290,808 + -1.0
1,290,809 - -2.9
1,290,809 - +0.1
1,290,809 - +0.3
1,290,809 - -0.9
1,290,809 - -0.6
1,290,809 - +0.1
1,290,956 + RR42_RS26455 0.24 +0.8
1,291,664 + -0.3
1,291,721 + RR42_RS26460 0.11 -0.9

Or see this region's nucleotide sequence