Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23475 and RR42_RS23480 are separated by 324 nucleotides RR42_RS23480 and RR42_RS23485 are separated by 152 nucleotides RR42_RS23485 and RR42_RS23490 are separated by 28 nucleotides
RR42_RS23475: RR42_RS23475 - IclR family transcriptional regulator, at 593,229 to 594,032
_RS23475
RR42_RS23480: RR42_RS23480 - 3-keto-5-aminohexanoate cleavage protein, at 594,357 to 595,190
_RS23480
RR42_RS23485: RR42_RS23485 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 595,343 to 596,128
_RS23485
RR42_RS23490: RR42_RS23490 - NADH oxidase, at 596,157 to 597,176
_RS23490
Position (kb) 594
595
596 Strain fitness (log2 ratio) -2
-1
0
1
2 at 593.358 kb on - strand, within RR42_RS23475 at 593.372 kb on + strand, within RR42_RS23475 at 593.442 kb on + strand, within RR42_RS23475 at 593.443 kb on - strand, within RR42_RS23475 at 593.614 kb on - strand, within RR42_RS23475 at 593.655 kb on - strand, within RR42_RS23475 at 593.657 kb on + strand, within RR42_RS23475 at 593.658 kb on - strand, within RR42_RS23475 at 593.675 kb on + strand, within RR42_RS23475 at 593.676 kb on - strand, within RR42_RS23475 at 593.710 kb on - strand, within RR42_RS23475 at 593.841 kb on + strand, within RR42_RS23475 at 593.841 kb on + strand, within RR42_RS23475 at 593.913 kb on + strand, within RR42_RS23475 at 593.913 kb on + strand, within RR42_RS23475 at 593.913 kb on + strand, within RR42_RS23475 at 593.913 kb on + strand, within RR42_RS23475 at 593.914 kb on - strand, within RR42_RS23475 at 593.914 kb on - strand, within RR42_RS23475 at 594.121 kb on + strand at 594.122 kb on - strand at 594.122 kb on - strand at 594.245 kb on + strand at 594.246 kb on - strand at 594.249 kb on + strand at 594.249 kb on + strand at 594.249 kb on + strand at 594.249 kb on + strand at 594.330 kb on + strand at 594.330 kb on + strand at 594.331 kb on - strand at 594.331 kb on - strand at 594.342 kb on + strand at 594.342 kb on + strand at 594.343 kb on - strand at 594.343 kb on - strand at 594.350 kb on + strand at 594.350 kb on + strand at 594.480 kb on - strand, within RR42_RS23480 at 594.480 kb on - strand, within RR42_RS23480 at 594.628 kb on + strand, within RR42_RS23480 at 594.750 kb on + strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.751 kb on - strand, within RR42_RS23480 at 594.785 kb on - strand, within RR42_RS23480 at 594.954 kb on - strand, within RR42_RS23480 at 594.991 kb on - strand, within RR42_RS23480 at 595.113 kb on - strand at 595.113 kb on - strand at 595.173 kb on - strand at 595.195 kb on - strand at 595.214 kb on + strand at 595.214 kb on + strand at 595.215 kb on - strand at 595.217 kb on - strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.389 kb on + strand at 595.390 kb on - strand at 595.390 kb on - strand at 595.497 kb on + strand, within RR42_RS23485 at 595.674 kb on + strand, within RR42_RS23485 at 595.675 kb on - strand, within RR42_RS23485 at 595.675 kb on - strand, within RR42_RS23485 at 596.128 kb on + strand at 596.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 593,358 - RR42_RS23475 0.16 -0.8 593,372 + RR42_RS23475 0.18 -1.3 593,442 + RR42_RS23475 0.26 -0.7 593,443 - RR42_RS23475 0.27 +0.9 593,614 - RR42_RS23475 0.48 -0.8 593,655 - RR42_RS23475 0.53 +0.2 593,657 + RR42_RS23475 0.53 -0.8 593,658 - RR42_RS23475 0.53 +0.3 593,675 + RR42_RS23475 0.55 -1.0 593,676 - RR42_RS23475 0.56 +0.3 593,710 - RR42_RS23475 0.60 -0.3 593,841 + RR42_RS23475 0.76 -1.5 593,841 + RR42_RS23475 0.76 +0.1 593,913 + RR42_RS23475 0.85 -0.2 593,913 + RR42_RS23475 0.85 -0.2 593,913 + RR42_RS23475 0.85 +0.2 593,913 + RR42_RS23475 0.85 -0.3 593,914 - RR42_RS23475 0.85 +0.5 593,914 - RR42_RS23475 0.85 -0.1 594,121 + +0.2 594,122 - +0.3 594,122 - +0.3 594,245 + +0.6 594,246 - +0.4 594,249 + -0.8 594,249 + +0.1 594,249 + +0.6 594,249 + +0.0 594,330 + -0.8 594,330 + -0.6 594,331 - -0.1 594,331 - +1.2 594,342 + -2.2 594,342 + -1.2 594,343 - -0.1 594,343 - +0.7 594,350 + +0.0 594,350 + -0.4 594,480 - RR42_RS23480 0.15 +0.6 594,480 - RR42_RS23480 0.15 +0.4 594,628 + RR42_RS23480 0.32 +2.2 594,750 + RR42_RS23480 0.47 +0.6 594,751 - RR42_RS23480 0.47 +0.1 594,751 - RR42_RS23480 0.47 -1.3 594,751 - RR42_RS23480 0.47 +0.2 594,785 - RR42_RS23480 0.51 +1.1 594,954 - RR42_RS23480 0.72 +0.6 594,991 - RR42_RS23480 0.76 +1.2 595,113 - +0.1 595,113 - -0.9 595,173 - -0.1 595,195 - +0.8 595,214 + +0.2 595,214 + -0.4 595,215 - +0.1 595,217 - -0.6 595,389 + +0.3 595,389 + +0.6 595,389 + -2.7 595,389 + -0.1 595,389 + -0.8 595,389 + +1.4 595,390 - -0.9 595,390 - -0.1 595,497 + RR42_RS23485 0.20 +0.2 595,674 + RR42_RS23485 0.42 +0.1 595,675 - RR42_RS23485 0.42 -1.9 595,675 - RR42_RS23485 0.42 -0.2 596,128 + +0.2 596,129 - -0.1
Or see this region's nucleotide sequence