Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23185

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23180 and RR42_RS23185 are separated by 233 nucleotidesRR42_RS23185 and RR42_RS23190 are separated by 120 nucleotidesRR42_RS23190 and RR42_RS23195 are separated by 186 nucleotides RR42_RS23180: RR42_RS23180 - ligand-gated channel, at 533,167 to 535,353 _RS23180 RR42_RS23185: RR42_RS23185 - membrane protein, at 535,587 to 536,636 _RS23185 RR42_RS23190: RR42_RS23190 - membrane protein, at 536,757 to 537,284 _RS23190 RR42_RS23195: RR42_RS23195 - membrane protein, at 537,471 to 538,349 _RS23195 Position (kb) 535 536 537Strain fitness (log2 ratio) -2 -1 0 1at 534.628 kb on + strand, within RR42_RS23180at 534.628 kb on + strand, within RR42_RS23180at 534.628 kb on + strand, within RR42_RS23180at 534.703 kb on + strand, within RR42_RS23180at 534.704 kb on - strand, within RR42_RS23180at 534.766 kb on + strand, within RR42_RS23180at 534.766 kb on + strand, within RR42_RS23180at 534.767 kb on - strand, within RR42_RS23180at 534.790 kb on + strand, within RR42_RS23180at 534.802 kb on + strand, within RR42_RS23180at 534.836 kb on + strand, within RR42_RS23180at 534.836 kb on + strand, within RR42_RS23180at 534.837 kb on - strand, within RR42_RS23180at 534.869 kb on - strand, within RR42_RS23180at 534.914 kb on - strand, within RR42_RS23180at 535.054 kb on + strand, within RR42_RS23180at 535.054 kb on + strand, within RR42_RS23180at 535.054 kb on + strand, within RR42_RS23180at 535.055 kb on - strand, within RR42_RS23180at 535.158 kb on + strandat 535.165 kb on + strandat 535.165 kb on + strandat 535.165 kb on + strandat 535.166 kb on - strandat 535.205 kb on - strandat 535.281 kb on + strandat 535.288 kb on + strandat 535.289 kb on - strandat 535.289 kb on - strandat 535.351 kb on + strandat 535.352 kb on - strandat 535.352 kb on - strandat 535.421 kb on + strandat 535.512 kb on + strandat 535.512 kb on + strandat 535.513 kb on - strandat 535.513 kb on - strandat 535.513 kb on - strandat 535.513 kb on - strandat 535.610 kb on + strandat 535.826 kb on - strand, within RR42_RS23185at 535.826 kb on - strand, within RR42_RS23185at 535.826 kb on - strand, within RR42_RS23185at 535.900 kb on + strand, within RR42_RS23185at 535.900 kb on + strand, within RR42_RS23185at 535.901 kb on - strand, within RR42_RS23185at 536.078 kb on + strand, within RR42_RS23185at 536.109 kb on + strand, within RR42_RS23185at 536.109 kb on + strand, within RR42_RS23185at 536.109 kb on + strand, within RR42_RS23185at 536.110 kb on - strand, within RR42_RS23185at 536.518 kb on + strand, within RR42_RS23185at 536.519 kb on - strand, within RR42_RS23185at 536.700 kb on + strandat 536.700 kb on + strandat 536.700 kb on + strandat 536.700 kb on + strandat 536.701 kb on - strandat 536.701 kb on - strandat 536.702 kb on + strandat 536.702 kb on + strandat 536.702 kb on + strandat 536.703 kb on - strandat 536.703 kb on - strandat 536.704 kb on + strandat 536.704 kb on + strandat 536.704 kb on + strandat 536.704 kb on + strandat 536.704 kb on + strandat 536.704 kb on + strandat 536.704 kb on + strandat 536.704 kb on + strandat 536.705 kb on - strandat 536.705 kb on - strandat 536.705 kb on - strandat 536.705 kb on - strandat 536.757 kb on - strandat 536.775 kb on + strandat 536.915 kb on + strand, within RR42_RS23190at 536.915 kb on + strand, within RR42_RS23190at 536.915 kb on + strand, within RR42_RS23190at 536.916 kb on - strand, within RR42_RS23190at 536.916 kb on - strand, within RR42_RS23190at 536.916 kb on - strand, within RR42_RS23190at 536.920 kb on - strand, within RR42_RS23190at 536.952 kb on + strand, within RR42_RS23190at 536.973 kb on + strand, within RR42_RS23190at 536.973 kb on + strand, within RR42_RS23190at 537.052 kb on - strand, within RR42_RS23190at 537.052 kb on - strand, within RR42_RS23190at 537.052 kb on - strand, within RR42_RS23190at 537.068 kb on + strand, within RR42_RS23190at 537.068 kb on + strand, within RR42_RS23190at 537.126 kb on + strand, within RR42_RS23190at 537.127 kb on - strand, within RR42_RS23190at 537.127 kb on - strand, within RR42_RS23190at 537.127 kb on - strand, within RR42_RS23190at 537.160 kb on - strand, within RR42_RS23190at 537.160 kb on - strand, within RR42_RS23190at 537.160 kb on - strand, within RR42_RS23190at 537.160 kb on - strand, within RR42_RS23190at 537.513 kb on + strandat 537.513 kb on + strandat 537.513 kb on + strandat 537.514 kb on - strandat 537.514 kb on - strandat 537.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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534,628 + RR42_RS23180 0.67 -1.3
534,628 + RR42_RS23180 0.67 -0.0
534,628 + RR42_RS23180 0.67 +0.8
534,703 + RR42_RS23180 0.70 -0.5
534,704 - RR42_RS23180 0.70 -0.1
534,766 + RR42_RS23180 0.73 +0.6
534,766 + RR42_RS23180 0.73 -0.3
534,767 - RR42_RS23180 0.73 +0.0
534,790 + RR42_RS23180 0.74 +1.6
534,802 + RR42_RS23180 0.75 -0.9
534,836 + RR42_RS23180 0.76 -0.4
534,836 + RR42_RS23180 0.76 -0.4
534,837 - RR42_RS23180 0.76 +0.3
534,869 - RR42_RS23180 0.78 -0.7
534,914 - RR42_RS23180 0.80 +0.0
535,054 + RR42_RS23180 0.86 +0.0
535,054 + RR42_RS23180 0.86 -1.6
535,054 + RR42_RS23180 0.86 +0.2
535,055 - RR42_RS23180 0.86 -0.0
535,158 + +0.7
535,165 + -1.1
535,165 + -0.1
535,165 + -1.0
535,166 - +0.0
535,205 - -0.0
535,281 + -0.3
535,288 + -1.7
535,289 - +0.0
535,289 - -0.1
535,351 + -0.2
535,352 - -0.3
535,352 - +0.4
535,421 + -0.1
535,512 + +0.6
535,512 + -0.1
535,513 - -1.4
535,513 - -0.0
535,513 - +0.1
535,513 - +0.3
535,610 + -0.2
535,826 - RR42_RS23185 0.23 +0.9
535,826 - RR42_RS23185 0.23 -0.1
535,826 - RR42_RS23185 0.23 +0.3
535,900 + RR42_RS23185 0.30 +0.6
535,900 + RR42_RS23185 0.30 +1.3
535,901 - RR42_RS23185 0.30 +0.2
536,078 + RR42_RS23185 0.47 +1.0
536,109 + RR42_RS23185 0.50 +0.5
536,109 + RR42_RS23185 0.50 +0.5
536,109 + RR42_RS23185 0.50 +0.1
536,110 - RR42_RS23185 0.50 -0.4
536,518 + RR42_RS23185 0.89 -0.1
536,519 - RR42_RS23185 0.89 +1.6
536,700 + -0.0
536,700 + +0.5
536,700 + -0.5
536,700 + -2.4
536,701 - -0.4
536,701 - +0.1
536,702 + -0.2
536,702 + -0.6
536,702 + -0.1
536,703 - -0.4
536,703 - -0.3
536,704 + +0.9
536,704 + +0.1
536,704 + -0.4
536,704 + -1.0
536,704 + -0.1
536,704 + -0.4
536,704 + +0.6
536,704 + -0.9
536,705 - -2.4
536,705 - -0.4
536,705 - +0.9
536,705 - +0.0
536,757 - -0.6
536,775 + -0.1
536,915 + RR42_RS23190 0.30 +0.1
536,915 + RR42_RS23190 0.30 +0.5
536,915 + RR42_RS23190 0.30 -0.3
536,916 - RR42_RS23190 0.30 +0.5
536,916 - RR42_RS23190 0.30 -0.6
536,916 - RR42_RS23190 0.30 +1.1
536,920 - RR42_RS23190 0.31 -0.2
536,952 + RR42_RS23190 0.37 +0.3
536,973 + RR42_RS23190 0.41 +0.6
536,973 + RR42_RS23190 0.41 -0.3
537,052 - RR42_RS23190 0.56 -0.4
537,052 - RR42_RS23190 0.56 -0.0
537,052 - RR42_RS23190 0.56 -0.2
537,068 + RR42_RS23190 0.59 +1.2
537,068 + RR42_RS23190 0.59 +0.0
537,126 + RR42_RS23190 0.70 -1.2
537,127 - RR42_RS23190 0.70 +0.1
537,127 - RR42_RS23190 0.70 +0.2
537,127 - RR42_RS23190 0.70 +0.7
537,160 - RR42_RS23190 0.76 -0.3
537,160 - RR42_RS23190 0.76 -0.3
537,160 - RR42_RS23190 0.76 +0.4
537,160 - RR42_RS23190 0.76 -0.3
537,513 + +0.1
537,513 + +1.0
537,513 + -1.4
537,514 - +1.4
537,514 - -0.4
537,514 - -0.1

Or see this region's nucleotide sequence