Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22200 and RR42_RS22205 are separated by 70 nucleotides RR42_RS22205 and RR42_RS22210 are separated by 168 nucleotides
RR42_RS22200: RR42_RS22200 - esterase, at 318,007 to 319,596
_RS22200
RR42_RS22205: RR42_RS22205 - arabinose ABC transporter permease, at 319,667 to 321,025
_RS22205
RR42_RS22210: RR42_RS22210 - cytochrome O ubiquinol oxidase, at 321,194 to 322,252
_RS22210
Position (kb) 319
320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 318.673 kb on + strand, within RR42_RS22200 at 318.716 kb on + strand, within RR42_RS22200 at 318.865 kb on + strand, within RR42_RS22200 at 318.877 kb on + strand, within RR42_RS22200 at 318.878 kb on - strand, within RR42_RS22200 at 318.910 kb on + strand, within RR42_RS22200 at 318.910 kb on + strand, within RR42_RS22200 at 318.911 kb on - strand, within RR42_RS22200 at 319.181 kb on - strand, within RR42_RS22200 at 319.346 kb on - strand, within RR42_RS22200 at 319.346 kb on - strand, within RR42_RS22200 at 319.426 kb on + strand, within RR42_RS22200 at 319.426 kb on + strand, within RR42_RS22200 at 319.531 kb on + strand at 319.654 kb on + strand at 320.188 kb on - strand, within RR42_RS22205 at 320.226 kb on + strand, within RR42_RS22205 at 320.243 kb on + strand, within RR42_RS22205 at 320.244 kb on - strand, within RR42_RS22205 at 320.421 kb on + strand, within RR42_RS22205 at 320.847 kb on + strand, within RR42_RS22205 at 320.847 kb on + strand, within RR42_RS22205 at 321.010 kb on + strand at 321.011 kb on - strand at 321.100 kb on + strand at 321.100 kb on + strand at 321.101 kb on - strand at 321.113 kb on + strand at 321.148 kb on - strand at 321.312 kb on + strand, within RR42_RS22210 at 321.373 kb on - strand, within RR42_RS22210 at 321.736 kb on + strand, within RR42_RS22210 at 321.761 kb on + strand, within RR42_RS22210 at 321.762 kb on - strand, within RR42_RS22210 at 321.818 kb on + strand, within RR42_RS22210 at 321.956 kb on + strand, within RR42_RS22210 at 321.956 kb on + strand, within RR42_RS22210 at 321.984 kb on + strand, within RR42_RS22210 at 322.001 kb on + strand, within RR42_RS22210 at 322.025 kb on + strand, within RR42_RS22210
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 318,673 + RR42_RS22200 0.42 +0.9 318,716 + RR42_RS22200 0.45 +0.3 318,865 + RR42_RS22200 0.54 +0.5 318,877 + RR42_RS22200 0.55 +0.4 318,878 - RR42_RS22200 0.55 -0.5 318,910 + RR42_RS22200 0.57 -1.3 318,910 + RR42_RS22200 0.57 -2.3 318,911 - RR42_RS22200 0.57 +0.4 319,181 - RR42_RS22200 0.74 -0.4 319,346 - RR42_RS22200 0.84 +0.3 319,346 - RR42_RS22200 0.84 -0.2 319,426 + RR42_RS22200 0.89 +0.6 319,426 + RR42_RS22200 0.89 +0.1 319,531 + -0.6 319,654 + -0.3 320,188 - RR42_RS22205 0.38 -0.0 320,226 + RR42_RS22205 0.41 -0.1 320,243 + RR42_RS22205 0.42 +0.4 320,244 - RR42_RS22205 0.42 +0.7 320,421 + RR42_RS22205 0.55 +0.9 320,847 + RR42_RS22205 0.87 +0.4 320,847 + RR42_RS22205 0.87 +0.2 321,010 + +0.3 321,011 - -0.6 321,100 + +0.5 321,100 + -0.3 321,101 - +0.3 321,113 + -0.5 321,148 - -0.9 321,312 + RR42_RS22210 0.11 +0.9 321,373 - RR42_RS22210 0.17 -0.1 321,736 + RR42_RS22210 0.51 +4.3 321,761 + RR42_RS22210 0.54 +0.2 321,762 - RR42_RS22210 0.54 -0.3 321,818 + RR42_RS22210 0.59 -0.6 321,956 + RR42_RS22210 0.72 +0.2 321,956 + RR42_RS22210 0.72 +0.0 321,984 + RR42_RS22210 0.75 +0.8 322,001 + RR42_RS22210 0.76 +0.2 322,025 + RR42_RS22210 0.78 +0.5
Or see this region's nucleotide sequence