Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21815 and RR42_RS21820 are separated by 426 nucleotides RR42_RS21820 and RR42_RS21825 are separated by 89 nucleotides RR42_RS21825 and RR42_RS21830 are separated by 96 nucleotides
RR42_RS21815: RR42_RS21815 - amino acid-binding protein, at 222,852 to 224,099
_RS21815
RR42_RS21820: RR42_RS21820 - GntR family transcriptional regulator, at 224,526 to 225,230
_RS21820
RR42_RS21825: RR42_RS21825 - hypothetical protein, at 225,320 to 225,868
_RS21825
RR42_RS21830: RR42_RS21830 - transcriptional regulator, at 225,965 to 226,879
_RS21830
Position (kb) 224
225
226 Strain fitness (log2 ratio) -1
0
1 at 223.555 kb on + strand, within RR42_RS21815 at 223.555 kb on + strand, within RR42_RS21815 at 223.663 kb on + strand, within RR42_RS21815 at 223.663 kb on + strand, within RR42_RS21815 at 223.879 kb on + strand, within RR42_RS21815 at 223.880 kb on - strand, within RR42_RS21815 at 223.880 kb on - strand, within RR42_RS21815 at 224.114 kb on + strand at 224.253 kb on - strand at 224.300 kb on + strand at 224.302 kb on + strand at 224.322 kb on + strand at 224.323 kb on - strand at 224.396 kb on + strand at 224.396 kb on + strand at 224.420 kb on - strand at 224.464 kb on + strand at 224.922 kb on + strand, within RR42_RS21820 at 225.072 kb on - strand, within RR42_RS21820 at 225.072 kb on - strand, within RR42_RS21820 at 225.129 kb on + strand, within RR42_RS21820 at 225.216 kb on + strand at 225.216 kb on + strand at 225.216 kb on + strand at 225.217 kb on - strand at 225.217 kb on - strand at 225.296 kb on + strand at 225.321 kb on + strand at 225.322 kb on - strand at 225.584 kb on - strand, within RR42_RS21825 at 225.709 kb on + strand, within RR42_RS21825 at 225.710 kb on - strand, within RR42_RS21825 at 225.710 kb on - strand, within RR42_RS21825 at 225.897 kb on + strand at 225.897 kb on + strand at 226.040 kb on + strand at 226.066 kb on - strand, within RR42_RS21830 at 226.066 kb on - strand, within RR42_RS21830
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 223,555 + RR42_RS21815 0.56 -0.1 223,555 + RR42_RS21815 0.56 -0.2 223,663 + RR42_RS21815 0.65 +0.7 223,663 + RR42_RS21815 0.65 +0.3 223,879 + RR42_RS21815 0.82 +0.6 223,880 - RR42_RS21815 0.82 -0.5 223,880 - RR42_RS21815 0.82 +0.0 224,114 + -0.7 224,253 - -0.6 224,300 + +0.0 224,302 + -0.1 224,322 + -0.5 224,323 - -0.0 224,396 + -0.3 224,396 + -0.1 224,420 - -0.6 224,464 + -0.3 224,922 + RR42_RS21820 0.56 -0.1 225,072 - RR42_RS21820 0.77 +0.4 225,072 - RR42_RS21820 0.77 +0.0 225,129 + RR42_RS21820 0.86 -0.2 225,216 + -0.6 225,216 + -0.1 225,216 + -0.7 225,217 - +0.9 225,217 - +1.0 225,296 + -0.3 225,321 + +0.3 225,322 - -0.0 225,584 - RR42_RS21825 0.48 +0.4 225,709 + RR42_RS21825 0.71 +0.1 225,710 - RR42_RS21825 0.71 -0.3 225,710 - RR42_RS21825 0.71 +0.4 225,897 + +0.1 225,897 + +0.5 226,040 + -1.7 226,066 - RR42_RS21830 0.11 +0.3 226,066 - RR42_RS21830 0.11 -0.3
Or see this region's nucleotide sequence