Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19760

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19750 and RR42_RS19755 are separated by 81 nucleotidesRR42_RS19755 and RR42_RS19760 are separated by 168 nucleotidesRR42_RS19760 and RR42_RS19765 are separated by 97 nucleotidesRR42_RS19765 and RR42_RS19770 are separated by 103 nucleotides RR42_RS19750: RR42_RS19750 - MBL fold metallo-hydrolase, at 4,263,874 to 4,264,524 _RS19750 RR42_RS19755: RR42_RS19755 - exonuclease, at 4,264,606 to 4,265,253 _RS19755 RR42_RS19760: RR42_RS19760 - hypothetical protein, at 4,265,422 to 4,265,649 _RS19760 RR42_RS19765: RR42_RS19765 - arsenate reductase, at 4,265,747 to 4,266,106 _RS19765 RR42_RS19770: RR42_RS19770 - LysR family transcriptional regulator, at 4,266,210 to 4,267,115 _RS19770 Position (kb) 4265 4266Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4264.493 kb on - strandat 4264.522 kb on + strandat 4264.523 kb on - strandat 4264.523 kb on - strandat 4264.646 kb on - strandat 4264.646 kb on - strandat 4264.646 kb on - strandat 4264.646 kb on - strandat 4264.646 kb on - strandat 4264.646 kb on - strandat 4264.882 kb on + strand, within RR42_RS19755at 4264.883 kb on - strand, within RR42_RS19755at 4264.966 kb on + strand, within RR42_RS19755at 4264.967 kb on - strand, within RR42_RS19755at 4265.309 kb on + strandat 4265.309 kb on + strandat 4265.310 kb on - strandat 4265.311 kb on + strandat 4265.311 kb on + strandat 4265.312 kb on - strandat 4265.312 kb on - strandat 4265.312 kb on - strandat 4265.315 kb on + strandat 4265.316 kb on - strandat 4265.316 kb on - strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.322 kb on + strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.323 kb on - strandat 4265.324 kb on + strandat 4265.325 kb on - strandat 4265.325 kb on - strandat 4265.325 kb on - strandat 4265.325 kb on - strandat 4265.375 kb on + strandat 4265.375 kb on + strandat 4265.376 kb on - strandat 4265.377 kb on + strandat 4265.377 kb on + strandat 4265.377 kb on + strandat 4265.377 kb on + strandat 4265.377 kb on + strandat 4265.377 kb on + strandat 4265.378 kb on - strandat 4265.378 kb on - strandat 4265.378 kb on - strandat 4265.557 kb on + strand, within RR42_RS19760at 4265.557 kb on + strand, within RR42_RS19760at 4265.557 kb on + strand, within RR42_RS19760at 4265.558 kb on - strand, within RR42_RS19760at 4265.558 kb on - strand, within RR42_RS19760at 4265.558 kb on - strand, within RR42_RS19760at 4265.558 kb on - strand, within RR42_RS19760at 4265.558 kb on - strand, within RR42_RS19760at 4265.558 kb on - strand, within RR42_RS19760at 4265.647 kb on + strandat 4265.648 kb on - strandat 4265.648 kb on - strandat 4265.648 kb on - strandat 4265.699 kb on + strandat 4265.699 kb on + strandat 4265.700 kb on - strandat 4265.700 kb on - strandat 4266.000 kb on + strand, within RR42_RS19765at 4266.001 kb on - strand, within RR42_RS19765at 4266.093 kb on + strandat 4266.093 kb on + strandat 4266.093 kb on + strandat 4266.093 kb on + strandat 4266.093 kb on + strandat 4266.094 kb on - strandat 4266.094 kb on - strandat 4266.100 kb on + strandat 4266.100 kb on + strandat 4266.100 kb on + strandat 4266.101 kb on - strandat 4266.101 kb on - strandat 4266.101 kb on - strandat 4266.159 kb on + strandat 4266.161 kb on + strandat 4266.161 kb on + strandat 4266.161 kb on + strandat 4266.161 kb on + strandat 4266.161 kb on + strandat 4266.161 kb on + strandat 4266.161 kb on + strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.162 kb on - strandat 4266.400 kb on + strand, within RR42_RS19770at 4266.474 kb on - strand, within RR42_RS19770at 4266.512 kb on + strand, within RR42_RS19770at 4266.512 kb on + strand, within RR42_RS19770

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,264,493 - +1.0
4,264,522 + -1.9
4,264,523 - -0.3
4,264,523 - -0.2
4,264,646 - -0.2
4,264,646 - +0.3
4,264,646 - +0.9
4,264,646 - +0.3
4,264,646 - -0.2
4,264,646 - -0.3
4,264,882 + RR42_RS19755 0.43 -1.1
4,264,883 - RR42_RS19755 0.43 -1.1
4,264,966 + RR42_RS19755 0.56 +0.8
4,264,967 - RR42_RS19755 0.56 -0.9
4,265,309 + +0.3
4,265,309 + -0.0
4,265,310 - +1.6
4,265,311 + -0.6
4,265,311 + +0.5
4,265,312 - +0.1
4,265,312 - +0.6
4,265,312 - +1.2
4,265,315 + -0.1
4,265,316 - -0.3
4,265,316 - -0.6
4,265,322 + -0.5
4,265,322 + -0.2
4,265,322 + -0.3
4,265,322 + -0.0
4,265,322 + +1.0
4,265,322 + -1.0
4,265,322 + +0.0
4,265,322 + +0.4
4,265,322 + -1.1
4,265,322 + -0.2
4,265,323 - -0.3
4,265,323 - +0.3
4,265,323 - +0.9
4,265,323 - +0.1
4,265,323 - -0.8
4,265,323 - -0.4
4,265,323 - +0.2
4,265,323 - -0.9
4,265,323 - -0.1
4,265,323 - -0.1
4,265,323 - +2.9
4,265,324 + -0.6
4,265,325 - -0.5
4,265,325 - +0.3
4,265,325 - +0.0
4,265,325 - -0.4
4,265,375 + +0.3
4,265,375 + +0.2
4,265,376 - +0.4
4,265,377 + +2.4
4,265,377 + -0.6
4,265,377 + +0.3
4,265,377 + -0.0
4,265,377 + -0.1
4,265,377 + +0.2
4,265,378 - -0.5
4,265,378 - +0.6
4,265,378 - +0.5
4,265,557 + RR42_RS19760 0.59 +1.5
4,265,557 + RR42_RS19760 0.59 +2.0
4,265,557 + RR42_RS19760 0.59 +0.5
4,265,558 - RR42_RS19760 0.60 +0.5
4,265,558 - RR42_RS19760 0.60 +0.1
4,265,558 - RR42_RS19760 0.60 +0.5
4,265,558 - RR42_RS19760 0.60 -0.2
4,265,558 - RR42_RS19760 0.60 +1.5
4,265,558 - RR42_RS19760 0.60 +0.4
4,265,647 + -0.5
4,265,648 - +0.1
4,265,648 - +0.7
4,265,648 - +1.0
4,265,699 + -0.3
4,265,699 + +0.5
4,265,700 - -0.2
4,265,700 - +0.5
4,266,000 + RR42_RS19765 0.70 -0.5
4,266,001 - RR42_RS19765 0.71 -0.7
4,266,093 + +0.9
4,266,093 + -0.9
4,266,093 + -0.0
4,266,093 + +0.4
4,266,093 + +0.3
4,266,094 - +0.1
4,266,094 - -0.7
4,266,100 + -0.5
4,266,100 + +0.0
4,266,100 + +1.0
4,266,101 - -0.2
4,266,101 - +0.6
4,266,101 - +0.3
4,266,159 + +0.3
4,266,161 + +0.1
4,266,161 + +0.4
4,266,161 + +0.4
4,266,161 + -0.5
4,266,161 + -2.4
4,266,161 + -0.0
4,266,161 + -0.7
4,266,162 - -0.4
4,266,162 - +0.1
4,266,162 - -1.3
4,266,162 - +0.1
4,266,162 - -0.1
4,266,162 - -1.0
4,266,162 - -0.2
4,266,162 - -0.2
4,266,162 - +0.1
4,266,162 - +0.9
4,266,400 + RR42_RS19770 0.21 +0.5
4,266,474 - RR42_RS19770 0.29 +0.6
4,266,512 + RR42_RS19770 0.33 +1.0
4,266,512 + RR42_RS19770 0.33 +0.4

Or see this region's nucleotide sequence