Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17720 and RR42_RS17725 are separated by 22 nucleotides RR42_RS17725 and RR42_RS17730 are separated by 507 nucleotides RR42_RS17730 and RR42_RS17735 are separated by 478 nucleotides
RR42_RS17720: RR42_RS17720 - sugar kinase, at 3,833,359 to 3,834,306
_RS17720
RR42_RS17725: RR42_RS17725 - membrane protein, at 3,834,329 to 3,834,796
_RS17725
RR42_RS17730: RR42_RS17730 - hypothetical protein, at 3,835,304 to 3,835,885
_RS17730
RR42_RS17735: RR42_RS17735 - hypothetical protein, at 3,836,364 to 3,837,023
_RS17735
Position (kb)
3835
3836 Strain fitness (log2 ratio)
-1
0
1
2 at 3834.304 kb on + strand at 3834.328 kb on + strand at 3834.329 kb on - strand at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.423 kb on - strand, within RR42_RS17725 at 3834.423 kb on - strand, within RR42_RS17725 at 3834.424 kb on + strand, within RR42_RS17725 at 3834.425 kb on - strand, within RR42_RS17725 at 3834.425 kb on - strand, within RR42_RS17725 at 3834.425 kb on - strand, within RR42_RS17725 at 3834.795 kb on - strand at 3834.918 kb on + strand at 3835.212 kb on + strand at 3835.212 kb on + strand at 3835.598 kb on + strand, within RR42_RS17730 at 3835.598 kb on + strand, within RR42_RS17730 at 3835.646 kb on + strand, within RR42_RS17730 at 3835.924 kb on + strand at 3835.924 kb on + strand at 3835.925 kb on - strand at 3835.925 kb on - strand at 3835.925 kb on - strand at 3835.957 kb on - strand at 3836.023 kb on - strand at 3836.118 kb on - strand at 3836.118 kb on - strand at 3836.118 kb on - strand at 3836.172 kb on - strand at 3836.184 kb on - strand at 3836.217 kb on + strand at 3836.217 kb on + strand at 3836.218 kb on - strand at 3836.218 kb on - strand at 3836.236 kb on + strand at 3836.237 kb on - strand at 3836.282 kb on + strand at 3836.293 kb on + strand at 3836.318 kb on + strand at 3836.318 kb on + strand at 3836.319 kb on - strand at 3836.462 kb on + strand, within RR42_RS17735 at 3836.462 kb on + strand, within RR42_RS17735 at 3836.463 kb on - strand, within RR42_RS17735 at 3836.484 kb on + strand, within RR42_RS17735 at 3836.790 kb on + strand, within RR42_RS17735
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,834,304 + +0.1 3,834,328 + +0.1 3,834,329 - -0.5 3,834,422 + RR42_RS17725 0.20 -1.4 3,834,422 + RR42_RS17725 0.20 -0.3 3,834,422 + RR42_RS17725 0.20 +0.9 3,834,422 + RR42_RS17725 0.20 -0.3 3,834,422 + RR42_RS17725 0.20 -1.3 3,834,422 + RR42_RS17725 0.20 +1.5 3,834,422 + RR42_RS17725 0.20 +0.7 3,834,423 - RR42_RS17725 0.20 +2.1 3,834,423 - RR42_RS17725 0.20 +0.3 3,834,424 + RR42_RS17725 0.20 -0.5 3,834,425 - RR42_RS17725 0.21 -0.0 3,834,425 - RR42_RS17725 0.21 -0.5 3,834,425 - RR42_RS17725 0.21 +0.5 3,834,795 - -0.0 3,834,918 + +0.5 3,835,212 + +0.6 3,835,212 + +1.6 3,835,598 + RR42_RS17730 0.51 -1.2 3,835,598 + RR42_RS17730 0.51 -0.8 3,835,646 + RR42_RS17730 0.59 -1.1 3,835,924 + -1.1 3,835,924 + +0.0 3,835,925 - -0.5 3,835,925 - -0.6 3,835,925 - -0.2 3,835,957 - +0.2 3,836,023 - +1.0 3,836,118 - +0.2 3,836,118 - -0.7 3,836,118 - +0.2 3,836,172 - +0.2 3,836,184 - -0.5 3,836,217 + -0.4 3,836,217 + -1.7 3,836,218 - -1.1 3,836,218 - +0.0 3,836,236 + +0.1 3,836,237 - -0.8 3,836,282 + -1.1 3,836,293 + +0.0 3,836,318 + -0.9 3,836,318 + -0.1 3,836,319 - +0.0 3,836,462 + RR42_RS17735 0.15 -0.2 3,836,462 + RR42_RS17735 0.15 -0.2 3,836,463 - RR42_RS17735 0.15 +0.9 3,836,484 + RR42_RS17735 0.18 -0.9 3,836,790 + RR42_RS17735 0.65 -1.1
Or see this region's nucleotide sequence