Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17730

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17720 and RR42_RS17725 are separated by 22 nucleotidesRR42_RS17725 and RR42_RS17730 are separated by 507 nucleotidesRR42_RS17730 and RR42_RS17735 are separated by 478 nucleotides RR42_RS17720: RR42_RS17720 - sugar kinase, at 3,833,359 to 3,834,306 _RS17720 RR42_RS17725: RR42_RS17725 - membrane protein, at 3,834,329 to 3,834,796 _RS17725 RR42_RS17730: RR42_RS17730 - hypothetical protein, at 3,835,304 to 3,835,885 _RS17730 RR42_RS17735: RR42_RS17735 - hypothetical protein, at 3,836,364 to 3,837,023 _RS17735 Position (kb) 3835 3836Strain fitness (log2 ratio) -1 0 1 2at 3834.304 kb on + strandat 3834.328 kb on + strandat 3834.329 kb on - strandat 3834.422 kb on + strand, within RR42_RS17725at 3834.422 kb on + strand, within RR42_RS17725at 3834.422 kb on + strand, within RR42_RS17725at 3834.422 kb on + strand, within RR42_RS17725at 3834.422 kb on + strand, within RR42_RS17725at 3834.422 kb on + strand, within RR42_RS17725at 3834.422 kb on + strand, within RR42_RS17725at 3834.423 kb on - strand, within RR42_RS17725at 3834.423 kb on - strand, within RR42_RS17725at 3834.424 kb on + strand, within RR42_RS17725at 3834.425 kb on - strand, within RR42_RS17725at 3834.425 kb on - strand, within RR42_RS17725at 3834.425 kb on - strand, within RR42_RS17725at 3834.795 kb on - strandat 3834.918 kb on + strandat 3835.212 kb on + strandat 3835.212 kb on + strandat 3835.598 kb on + strand, within RR42_RS17730at 3835.598 kb on + strand, within RR42_RS17730at 3835.646 kb on + strand, within RR42_RS17730at 3835.924 kb on + strandat 3835.924 kb on + strandat 3835.925 kb on - strandat 3835.925 kb on - strandat 3835.925 kb on - strandat 3835.957 kb on - strandat 3836.023 kb on - strandat 3836.118 kb on - strandat 3836.118 kb on - strandat 3836.118 kb on - strandat 3836.172 kb on - strandat 3836.184 kb on - strandat 3836.217 kb on + strandat 3836.217 kb on + strandat 3836.218 kb on - strandat 3836.218 kb on - strandat 3836.236 kb on + strandat 3836.237 kb on - strandat 3836.282 kb on + strandat 3836.293 kb on + strandat 3836.318 kb on + strandat 3836.318 kb on + strandat 3836.319 kb on - strandat 3836.462 kb on + strand, within RR42_RS17735at 3836.462 kb on + strand, within RR42_RS17735at 3836.463 kb on - strand, within RR42_RS17735at 3836.484 kb on + strand, within RR42_RS17735at 3836.790 kb on + strand, within RR42_RS17735

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,834,304 + +0.1
3,834,328 + +0.1
3,834,329 - -0.5
3,834,422 + RR42_RS17725 0.20 -1.4
3,834,422 + RR42_RS17725 0.20 -0.3
3,834,422 + RR42_RS17725 0.20 +0.9
3,834,422 + RR42_RS17725 0.20 -0.3
3,834,422 + RR42_RS17725 0.20 -1.3
3,834,422 + RR42_RS17725 0.20 +1.5
3,834,422 + RR42_RS17725 0.20 +0.7
3,834,423 - RR42_RS17725 0.20 +2.1
3,834,423 - RR42_RS17725 0.20 +0.3
3,834,424 + RR42_RS17725 0.20 -0.5
3,834,425 - RR42_RS17725 0.21 -0.0
3,834,425 - RR42_RS17725 0.21 -0.5
3,834,425 - RR42_RS17725 0.21 +0.5
3,834,795 - -0.0
3,834,918 + +0.5
3,835,212 + +0.6
3,835,212 + +1.6
3,835,598 + RR42_RS17730 0.51 -1.2
3,835,598 + RR42_RS17730 0.51 -0.8
3,835,646 + RR42_RS17730 0.59 -1.1
3,835,924 + -1.1
3,835,924 + +0.0
3,835,925 - -0.5
3,835,925 - -0.6
3,835,925 - -0.2
3,835,957 - +0.2
3,836,023 - +1.0
3,836,118 - +0.2
3,836,118 - -0.7
3,836,118 - +0.2
3,836,172 - +0.2
3,836,184 - -0.5
3,836,217 + -0.4
3,836,217 + -1.7
3,836,218 - -1.1
3,836,218 - +0.0
3,836,236 + +0.1
3,836,237 - -0.8
3,836,282 + -1.1
3,836,293 + +0.0
3,836,318 + -0.9
3,836,318 + -0.1
3,836,319 - +0.0
3,836,462 + RR42_RS17735 0.15 -0.2
3,836,462 + RR42_RS17735 0.15 -0.2
3,836,463 - RR42_RS17735 0.15 +0.9
3,836,484 + RR42_RS17735 0.18 -0.9
3,836,790 + RR42_RS17735 0.65 -1.1

Or see this region's nucleotide sequence