Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17160 and RR42_RS17165 are separated by 19 nucleotides RR42_RS17165 and RR42_RS17170 are separated by 117 nucleotides RR42_RS17170 and RR42_RS17175 are separated by 189 nucleotides
RR42_RS17160: RR42_RS17160 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 3,715,572 to 3,716,588
_RS17160
RR42_RS17165: RR42_RS17165 - hypothetical protein, at 3,716,608 to 3,716,919
_RS17165
RR42_RS17170: RR42_RS17170 - argininosuccinate synthase, at 3,717,037 to 3,718,266
_RS17170
RR42_RS17175: RR42_RS17175 - ornithine carbamoyltransferase, at 3,718,456 to 3,719,379
_RS17175
Position (kb)
3717
3718
3719 Strain fitness (log2 ratio)
-1
0
1 at 3716.586 kb on + strand at 3716.587 kb on - strand at 3716.627 kb on + strand at 3716.699 kb on + strand, within RR42_RS17165 at 3716.699 kb on + strand, within RR42_RS17165 at 3716.699 kb on + strand, within RR42_RS17165 at 3716.700 kb on - strand, within RR42_RS17165 at 3716.899 kb on + strand at 3716.900 kb on - strand at 3716.900 kb on - strand at 3716.900 kb on - strand at 3716.922 kb on + strand at 3716.922 kb on + strand at 3716.922 kb on + strand at 3716.922 kb on + strand at 3718.288 kb on - strand at 3718.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,716,586 + -0.1 3,716,587 - -0.3 3,716,627 + -0.7 3,716,699 + RR42_RS17165 0.29 +0.4 3,716,699 + RR42_RS17165 0.29 -0.6 3,716,699 + RR42_RS17165 0.29 +1.3 3,716,700 - RR42_RS17165 0.29 -0.1 3,716,899 + +0.3 3,716,900 - +0.9 3,716,900 - +0.5 3,716,900 - -0.6 3,716,922 + +0.2 3,716,922 + -1.4 3,716,922 + +0.9 3,716,922 + -0.2 3,718,288 - +1.2 3,718,460 + -1.4
Or see this region's nucleotide sequence