Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16125

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16120 and RR42_RS16125 are separated by 57 nucleotidesRR42_RS16125 and RR42_RS16130 overlap by 8 nucleotidesRR42_RS16130 and RR42_RS16135 are separated by 5 nucleotides RR42_RS16120: RR42_RS16120 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 3,490,425 to 3,491,465 _RS16120 RR42_RS16125: RR42_RS16125 - Cob(I)yrinic acid a,c-diamide adenosyltransferase, at 3,491,523 to 3,492,164 _RS16125 RR42_RS16130: RR42_RS16130 - ABC transporter ATP-binding protein, at 3,492,157 to 3,492,993 _RS16130 RR42_RS16135: RR42_RS16135 - ABC transporter permease, at 3,492,999 to 3,494,006 _RS16135 Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -1 0 1at 3490.901 kb on + strand, within RR42_RS16120at 3490.901 kb on + strand, within RR42_RS16120at 3490.908 kb on - strand, within RR42_RS16120at 3490.941 kb on - strand, within RR42_RS16120at 3491.245 kb on + strand, within RR42_RS16120at 3491.468 kb on + strandat 3491.469 kb on - strandat 3491.515 kb on + strandat 3491.525 kb on - strandat 3491.525 kb on - strandat 3491.705 kb on - strand, within RR42_RS16125at 3491.843 kb on - strand, within RR42_RS16125at 3491.843 kb on - strand, within RR42_RS16125at 3492.996 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,490,901 + RR42_RS16120 0.46 -0.2
3,490,901 + RR42_RS16120 0.46 +0.1
3,490,908 - RR42_RS16120 0.46 -0.2
3,490,941 - RR42_RS16120 0.50 +0.3
3,491,245 + RR42_RS16120 0.79 -0.3
3,491,468 + -1.2
3,491,469 - -1.1
3,491,515 + -0.3
3,491,525 - +0.1
3,491,525 - -1.1
3,491,705 - RR42_RS16125 0.28 +0.4
3,491,843 - RR42_RS16125 0.50 +0.2
3,491,843 - RR42_RS16125 0.50 +0.7
3,492,996 + -0.5

Or see this region's nucleotide sequence