Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14965 and RR42_RS14975 are separated by 486 nucleotides RR42_RS14975 and RR42_RS14980 are separated by 225 nucleotides RR42_RS14980 and RR42_RS14985 are separated by 130 nucleotides
RR42_RS14965: RR42_RS14965 - hypothetical protein, at 3,234,764 to 3,237,040
_RS14965
RR42_RS14975: RR42_RS14975 - DNA primase, at 3,237,527 to 3,239,341
_RS14975
RR42_RS14980: RR42_RS14980 - glutamyl-tRNA amidotransferase, at 3,239,567 to 3,240,016
_RS14980
RR42_RS14985: RR42_RS14985 - 30S ribosomal protein S21, at 3,240,147 to 3,240,359
_RS14985
Position (kb)
3237
3238
3239
3240 Strain fitness (log2 ratio)
-1
0
1 at 3237.023 kb on - strand at 3237.026 kb on - strand at 3237.026 kb on - strand at 3237.026 kb on - strand at 3237.071 kb on - strand at 3237.071 kb on - strand at 3237.071 kb on - strand at 3237.071 kb on - strand at 3237.377 kb on + strand at 3237.377 kb on + strand at 3237.377 kb on + strand at 3237.378 kb on - strand at 3237.378 kb on - strand at 3237.383 kb on + strand at 3237.383 kb on + strand at 3237.384 kb on - strand at 3237.384 kb on - strand at 3237.437 kb on + strand at 3237.437 kb on + strand at 3237.469 kb on + strand at 3237.469 kb on + strand at 3237.470 kb on - strand at 3237.470 kb on - strand at 3237.470 kb on - strand at 3237.497 kb on + strand at 3239.357 kb on - strand at 3239.440 kb on - strand at 3239.446 kb on - strand at 3239.446 kb on - strand at 3239.453 kb on - strand at 3239.513 kb on + strand at 3239.551 kb on + strand at 3239.660 kb on - strand, within RR42_RS14980 at 3239.751 kb on + strand, within RR42_RS14980 at 3239.751 kb on + strand, within RR42_RS14980 at 3239.751 kb on + strand, within RR42_RS14980 at 3239.752 kb on - strand, within RR42_RS14980 at 3240.022 kb on + strand at 3240.152 kb on - strand at 3240.152 kb on - strand at 3240.191 kb on - strand, within RR42_RS14985
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,237,023 - -0.8 3,237,026 - +0.6 3,237,026 - -0.3 3,237,026 - -1.5 3,237,071 - -0.7 3,237,071 - -0.3 3,237,071 - +0.0 3,237,071 - +0.2 3,237,377 + -0.3 3,237,377 + +0.1 3,237,377 + +0.3 3,237,378 - -0.9 3,237,378 - -0.1 3,237,383 + -0.5 3,237,383 + -0.2 3,237,384 - -0.3 3,237,384 - +1.0 3,237,437 + -1.4 3,237,437 + +0.0 3,237,469 + +0.2 3,237,469 + -0.8 3,237,470 - +0.2 3,237,470 - +0.9 3,237,470 - -0.8 3,237,497 + -0.1 3,239,357 - -0.4 3,239,440 - -0.4 3,239,446 - -0.0 3,239,446 - +0.2 3,239,453 - +0.1 3,239,513 + -0.5 3,239,551 + +0.1 3,239,660 - RR42_RS14980 0.21 -1.3 3,239,751 + RR42_RS14980 0.41 -0.3 3,239,751 + RR42_RS14980 0.41 +0.5 3,239,751 + RR42_RS14980 0.41 +0.3 3,239,752 - RR42_RS14980 0.41 +0.7 3,240,022 + +0.0 3,240,152 - +0.3 3,240,152 - +1.6 3,240,191 - RR42_RS14985 0.21 -0.9
Or see this region's nucleotide sequence