Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12450

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12445 and RR42_RS12450 are separated by 109 nucleotidesRR42_RS12450 and RR42_RS12455 are separated by 209 nucleotides RR42_RS12445: RR42_RS12445 - hypothetical protein, at 2,674,723 to 2,675,238 _RS12445 RR42_RS12450: RR42_RS12450 - hypothetical protein, at 2,675,348 to 2,675,716 _RS12450 RR42_RS12455: RR42_RS12455 - protein disaggregation chaperone, at 2,675,926 to 2,678,514 _RS12455 Position (kb) 2675 2676Strain fitness (log2 ratio) -2 -1 0 1 2at 2674.439 kb on + strandat 2674.453 kb on + strandat 2674.454 kb on - strandat 2674.557 kb on - strandat 2674.689 kb on - strandat 2674.689 kb on - strandat 2674.739 kb on - strandat 2675.210 kb on - strandat 2675.310 kb on + strandat 2675.310 kb on + strandat 2675.311 kb on - strandat 2675.321 kb on + strandat 2675.321 kb on + strandat 2675.322 kb on - strandat 2675.366 kb on + strandat 2675.492 kb on + strand, within RR42_RS12450at 2675.537 kb on + strand, within RR42_RS12450at 2675.558 kb on + strand, within RR42_RS12450at 2675.576 kb on + strand, within RR42_RS12450at 2675.642 kb on + strand, within RR42_RS12450at 2675.681 kb on + strandat 2675.682 kb on - strandat 2675.682 kb on - strandat 2675.682 kb on - strandat 2675.682 kb on - strandat 2675.687 kb on + strandat 2675.687 kb on + strandat 2675.687 kb on + strandat 2675.688 kb on - strandat 2675.688 kb on - strandat 2675.699 kb on + strandat 2675.836 kb on - strandat 2675.846 kb on - strandat 2675.846 kb on - strandat 2675.951 kb on + strandat 2675.952 kb on - strandat 2675.952 kb on - strandat 2675.952 kb on - strandat 2675.967 kb on - strandat 2676.086 kb on + strandat 2676.198 kb on + strand, within RR42_RS12455at 2676.287 kb on - strand, within RR42_RS12455at 2676.495 kb on - strand, within RR42_RS12455at 2676.548 kb on + strand, within RR42_RS12455

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,674,439 + +1.2
2,674,453 + -2.0
2,674,454 - -0.2
2,674,557 - -0.7
2,674,689 - -0.1
2,674,689 - +0.8
2,674,739 - -0.8
2,675,210 - -0.2
2,675,310 + +0.1
2,675,310 + -0.5
2,675,311 - +0.4
2,675,321 + +0.0
2,675,321 + +1.5
2,675,322 - -0.4
2,675,366 + -0.8
2,675,492 + RR42_RS12450 0.39 -0.2
2,675,537 + RR42_RS12450 0.51 +0.9
2,675,558 + RR42_RS12450 0.57 -0.0
2,675,576 + RR42_RS12450 0.62 -0.6
2,675,642 + RR42_RS12450 0.80 +1.8
2,675,681 + -0.3
2,675,682 - -0.3
2,675,682 - -1.2
2,675,682 - +0.4
2,675,682 - -0.1
2,675,687 + +0.1
2,675,687 + -0.3
2,675,687 + -0.9
2,675,688 - +0.2
2,675,688 - +0.6
2,675,699 + +0.1
2,675,836 - -0.2
2,675,846 - +0.4
2,675,846 - -0.3
2,675,951 + -1.5
2,675,952 - -0.6
2,675,952 - -1.8
2,675,952 - -0.3
2,675,967 - -1.8
2,676,086 + -0.3
2,676,198 + RR42_RS12455 0.11 +0.7
2,676,287 - RR42_RS12455 0.14 +1.0
2,676,495 - RR42_RS12455 0.22 -0.1
2,676,548 + RR42_RS12455 0.24 -0.4

Or see this region's nucleotide sequence