Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08705 and RR42_RS08710 are separated by 82 nucleotides RR42_RS08710 and RR42_RS08715 are separated by 141 nucleotides RR42_RS08715 and RR42_RS08720 are separated by 174 nucleotides
RR42_RS08705: RR42_RS08705 - pirin, at 1,822,445 to 1,823,152
_RS08705
RR42_RS08710: RR42_RS08710 - oxidoreductase, at 1,823,235 to 1,823,999
_RS08710
RR42_RS08715: RR42_RS08715 - LysR family transcriptional regulator, at 1,824,141 to 1,825,058
_RS08715
RR42_RS08720: RR42_RS08720 - alpha/beta hydrolase, at 1,825,233 to 1,826,198
_RS08720
Position (kb)
1824
1825
1826 Strain fitness (log2 ratio)
-1
0
1 at 1823.375 kb on - strand, within RR42_RS08710 at 1823.459 kb on + strand, within RR42_RS08710 at 1823.505 kb on + strand, within RR42_RS08710 at 1823.640 kb on + strand, within RR42_RS08710 at 1823.641 kb on - strand, within RR42_RS08710 at 1823.677 kb on + strand, within RR42_RS08710 at 1823.777 kb on - strand, within RR42_RS08710 at 1823.817 kb on + strand, within RR42_RS08710 at 1823.868 kb on + strand, within RR42_RS08710 at 1823.868 kb on + strand, within RR42_RS08710 at 1823.869 kb on - strand, within RR42_RS08710 at 1823.869 kb on - strand, within RR42_RS08710 at 1823.896 kb on + strand, within RR42_RS08710 at 1823.896 kb on + strand, within RR42_RS08710 at 1823.952 kb on - strand at 1824.021 kb on + strand at 1824.022 kb on - strand at 1824.068 kb on + strand at 1824.173 kb on + strand at 1824.173 kb on + strand at 1824.173 kb on + strand at 1824.173 kb on + strand at 1824.174 kb on - strand at 1824.174 kb on - strand at 1824.366 kb on + strand, within RR42_RS08715 at 1824.367 kb on - strand, within RR42_RS08715 at 1824.954 kb on + strand, within RR42_RS08715 at 1824.954 kb on + strand, within RR42_RS08715 at 1824.955 kb on + strand, within RR42_RS08715 at 1825.163 kb on - strand at 1825.229 kb on + strand at 1825.229 kb on + strand at 1825.229 kb on + strand at 1825.229 kb on + strand at 1825.229 kb on + strand at 1825.645 kb on - strand, within RR42_RS08720 at 1825.645 kb on - strand, within RR42_RS08720 at 1825.843 kb on - strand, within RR42_RS08720 at 1825.843 kb on - strand, within RR42_RS08720 at 1825.864 kb on - strand, within RR42_RS08720 at 1825.962 kb on - strand, within RR42_RS08720 at 1826.041 kb on - strand, within RR42_RS08720
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,823,375 - RR42_RS08710 0.18 +0.4 1,823,459 + RR42_RS08710 0.29 +0.6 1,823,505 + RR42_RS08710 0.35 +0.9 1,823,640 + RR42_RS08710 0.53 -0.6 1,823,641 - RR42_RS08710 0.53 +0.1 1,823,677 + RR42_RS08710 0.58 +0.3 1,823,777 - RR42_RS08710 0.71 +0.3 1,823,817 + RR42_RS08710 0.76 +0.8 1,823,868 + RR42_RS08710 0.83 -0.1 1,823,868 + RR42_RS08710 0.83 -0.5 1,823,869 - RR42_RS08710 0.83 -0.0 1,823,869 - RR42_RS08710 0.83 +0.6 1,823,896 + RR42_RS08710 0.86 -0.4 1,823,896 + RR42_RS08710 0.86 +0.3 1,823,952 - -0.3 1,824,021 + +0.3 1,824,022 - -1.4 1,824,068 + -1.5 1,824,173 + +0.7 1,824,173 + -0.3 1,824,173 + +0.0 1,824,173 + +0.2 1,824,174 - +0.6 1,824,174 - -0.2 1,824,366 + RR42_RS08715 0.25 -0.2 1,824,367 - RR42_RS08715 0.25 -0.7 1,824,954 + RR42_RS08715 0.89 -1.0 1,824,954 + RR42_RS08715 0.89 -1.2 1,824,955 + RR42_RS08715 0.89 -1.4 1,825,163 - -0.1 1,825,229 + -0.9 1,825,229 + -0.7 1,825,229 + -0.4 1,825,229 + +0.7 1,825,229 + +0.2 1,825,645 - RR42_RS08720 0.43 +0.6 1,825,645 - RR42_RS08720 0.43 +1.2 1,825,843 - RR42_RS08720 0.63 -0.6 1,825,843 - RR42_RS08720 0.63 +0.1 1,825,864 - RR42_RS08720 0.65 +0.0 1,825,962 - RR42_RS08720 0.75 -1.4 1,826,041 - RR42_RS08720 0.84 +0.4
Or see this region's nucleotide sequence