Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07630

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07625 and RR42_RS07630 are separated by 322 nucleotidesRR42_RS07630 and RR42_RS07635 are separated by 167 nucleotidesRR42_RS07635 and RR42_RS07640 are separated by 520 nucleotides RR42_RS07625: RR42_RS07625 - dihydrouridine synthase, at 1,633,521 to 1,634,501 _RS07625 RR42_RS07630: RR42_RS07630 - methyltransferase type 12, at 1,634,824 to 1,635,396 _RS07630 RR42_RS07635: RR42_RS07635 - hypothetical protein, at 1,635,564 to 1,635,788 _RS07635 RR42_RS07640: RR42_RS07640 - ribosomal protein S12 methylthiotransferase, at 1,636,309 to 1,637,664 _RS07640 Position (kb) 1634 1635 1636Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1634.137 kb on + strand, within RR42_RS07625at 1634.138 kb on - strand, within RR42_RS07625at 1634.182 kb on + strand, within RR42_RS07625at 1634.182 kb on + strand, within RR42_RS07625at 1634.183 kb on - strand, within RR42_RS07625at 1634.183 kb on - strand, within RR42_RS07625at 1634.230 kb on + strand, within RR42_RS07625at 1634.230 kb on + strand, within RR42_RS07625at 1634.230 kb on + strand, within RR42_RS07625at 1634.231 kb on - strand, within RR42_RS07625at 1634.231 kb on - strand, within RR42_RS07625at 1634.231 kb on - strand, within RR42_RS07625at 1634.288 kb on + strand, within RR42_RS07625at 1634.298 kb on + strand, within RR42_RS07625at 1634.299 kb on - strand, within RR42_RS07625at 1634.299 kb on - strand, within RR42_RS07625at 1634.367 kb on + strand, within RR42_RS07625at 1634.367 kb on + strand, within RR42_RS07625at 1634.368 kb on - strand, within RR42_RS07625at 1634.499 kb on + strandat 1634.499 kb on + strandat 1634.499 kb on + strandat 1634.500 kb on - strandat 1634.638 kb on + strandat 1634.638 kb on + strandat 1634.638 kb on + strandat 1634.638 kb on + strandat 1634.639 kb on - strandat 1634.639 kb on - strandat 1634.639 kb on - strandat 1634.639 kb on - strandat 1634.668 kb on - strandat 1634.668 kb on - strandat 1634.722 kb on - strandat 1634.722 kb on - strandat 1634.722 kb on - strandat 1634.773 kb on + strandat 1635.106 kb on - strand, within RR42_RS07630at 1635.106 kb on - strand, within RR42_RS07630at 1635.378 kb on - strandat 1635.378 kb on - strandat 1635.378 kb on - strandat 1635.407 kb on + strandat 1635.407 kb on + strandat 1635.407 kb on + strandat 1635.408 kb on - strandat 1635.408 kb on - strandat 1635.438 kb on + strandat 1635.438 kb on + strandat 1635.438 kb on + strandat 1635.438 kb on + strandat 1635.439 kb on - strandat 1635.439 kb on - strandat 1635.508 kb on + strandat 1635.508 kb on + strandat 1635.509 kb on - strandat 1635.509 kb on - strandat 1635.509 kb on - strandat 1635.926 kb on - strandat 1635.926 kb on - strandat 1635.926 kb on - strandat 1635.935 kb on + strandat 1635.936 kb on - strandat 1635.936 kb on - strandat 1635.936 kb on - strandat 1635.975 kb on + strandat 1636.073 kb on + strandat 1636.085 kb on + strandat 1636.086 kb on - strandat 1636.086 kb on - strandat 1636.106 kb on + strandat 1636.212 kb on + strandat 1636.212 kb on + strandat 1636.323 kb on + strandat 1636.385 kb on + strandat 1636.385 kb on + strandat 1636.386 kb on - strandat 1636.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,634,137 + RR42_RS07625 0.63 +0.9
1,634,138 - RR42_RS07625 0.63 -0.6
1,634,182 + RR42_RS07625 0.67 -0.5
1,634,182 + RR42_RS07625 0.67 +0.2
1,634,183 - RR42_RS07625 0.67 +0.0
1,634,183 - RR42_RS07625 0.67 -0.0
1,634,230 + RR42_RS07625 0.72 +1.2
1,634,230 + RR42_RS07625 0.72 +0.2
1,634,230 + RR42_RS07625 0.72 -2.1
1,634,231 - RR42_RS07625 0.72 +0.7
1,634,231 - RR42_RS07625 0.72 -0.2
1,634,231 - RR42_RS07625 0.72 -0.3
1,634,288 + RR42_RS07625 0.78 -1.9
1,634,298 + RR42_RS07625 0.79 +0.6
1,634,299 - RR42_RS07625 0.79 +0.4
1,634,299 - RR42_RS07625 0.79 +0.2
1,634,367 + RR42_RS07625 0.86 -0.3
1,634,367 + RR42_RS07625 0.86 +1.8
1,634,368 - RR42_RS07625 0.86 -0.9
1,634,499 + +0.3
1,634,499 + +0.8
1,634,499 + +0.8
1,634,500 - +0.4
1,634,638 + -1.3
1,634,638 + -1.0
1,634,638 + -0.1
1,634,638 + +0.2
1,634,639 - +0.2
1,634,639 - -0.1
1,634,639 - -0.7
1,634,639 - +1.0
1,634,668 - -0.3
1,634,668 - -0.5
1,634,722 - -0.0
1,634,722 - -1.5
1,634,722 - +0.7
1,634,773 + -0.2
1,635,106 - RR42_RS07630 0.49 -1.2
1,635,106 - RR42_RS07630 0.49 -0.7
1,635,378 - -0.2
1,635,378 - +1.7
1,635,378 - -0.5
1,635,407 + -1.8
1,635,407 + +0.5
1,635,407 + -0.3
1,635,408 - +1.4
1,635,408 - -0.5
1,635,438 + +0.3
1,635,438 + +0.5
1,635,438 + -0.3
1,635,438 + -0.2
1,635,439 - +0.4
1,635,439 - +0.6
1,635,508 + +0.2
1,635,508 + -0.1
1,635,509 - -0.8
1,635,509 - -0.1
1,635,509 - +0.2
1,635,926 - -0.9
1,635,926 - -0.8
1,635,926 - +0.9
1,635,935 + +0.3
1,635,936 - -0.7
1,635,936 - +0.6
1,635,936 - -0.4
1,635,975 + +0.7
1,636,073 + -2.9
1,636,085 + +0.9
1,636,086 - -0.9
1,636,086 - -0.7
1,636,106 + +1.1
1,636,212 + +0.3
1,636,212 + -0.2
1,636,323 + +0.2
1,636,385 + +0.8
1,636,385 + -0.7
1,636,386 - +0.6
1,636,390 - +0.2

Or see this region's nucleotide sequence