Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07625 and RR42_RS07630 are separated by 322 nucleotides RR42_RS07630 and RR42_RS07635 are separated by 167 nucleotides RR42_RS07635 and RR42_RS07640 are separated by 520 nucleotides
RR42_RS07625: RR42_RS07625 - dihydrouridine synthase, at 1,633,521 to 1,634,501
_RS07625
RR42_RS07630: RR42_RS07630 - methyltransferase type 12, at 1,634,824 to 1,635,396
_RS07630
RR42_RS07635: RR42_RS07635 - hypothetical protein, at 1,635,564 to 1,635,788
_RS07635
RR42_RS07640: RR42_RS07640 - ribosomal protein S12 methylthiotransferase, at 1,636,309 to 1,637,664
_RS07640
Position (kb)
1634
1635
1636 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1634.137 kb on + strand, within RR42_RS07625 at 1634.138 kb on - strand, within RR42_RS07625 at 1634.182 kb on + strand, within RR42_RS07625 at 1634.182 kb on + strand, within RR42_RS07625 at 1634.183 kb on - strand, within RR42_RS07625 at 1634.183 kb on - strand, within RR42_RS07625 at 1634.230 kb on + strand, within RR42_RS07625 at 1634.230 kb on + strand, within RR42_RS07625 at 1634.230 kb on + strand, within RR42_RS07625 at 1634.231 kb on - strand, within RR42_RS07625 at 1634.231 kb on - strand, within RR42_RS07625 at 1634.231 kb on - strand, within RR42_RS07625 at 1634.288 kb on + strand, within RR42_RS07625 at 1634.298 kb on + strand, within RR42_RS07625 at 1634.299 kb on - strand, within RR42_RS07625 at 1634.299 kb on - strand, within RR42_RS07625 at 1634.367 kb on + strand, within RR42_RS07625 at 1634.367 kb on + strand, within RR42_RS07625 at 1634.368 kb on - strand, within RR42_RS07625 at 1634.499 kb on + strand at 1634.499 kb on + strand at 1634.499 kb on + strand at 1634.500 kb on - strand at 1634.638 kb on + strand at 1634.638 kb on + strand at 1634.638 kb on + strand at 1634.638 kb on + strand at 1634.639 kb on - strand at 1634.639 kb on - strand at 1634.639 kb on - strand at 1634.639 kb on - strand at 1634.668 kb on - strand at 1634.668 kb on - strand at 1634.722 kb on - strand at 1634.722 kb on - strand at 1634.722 kb on - strand at 1634.773 kb on + strand at 1635.106 kb on - strand, within RR42_RS07630 at 1635.106 kb on - strand, within RR42_RS07630 at 1635.378 kb on - strand at 1635.378 kb on - strand at 1635.378 kb on - strand at 1635.407 kb on + strand at 1635.407 kb on + strand at 1635.407 kb on + strand at 1635.408 kb on - strand at 1635.408 kb on - strand at 1635.438 kb on + strand at 1635.438 kb on + strand at 1635.438 kb on + strand at 1635.438 kb on + strand at 1635.439 kb on - strand at 1635.439 kb on - strand at 1635.508 kb on + strand at 1635.508 kb on + strand at 1635.509 kb on - strand at 1635.509 kb on - strand at 1635.509 kb on - strand at 1635.926 kb on - strand at 1635.926 kb on - strand at 1635.926 kb on - strand at 1635.935 kb on + strand at 1635.936 kb on - strand at 1635.936 kb on - strand at 1635.936 kb on - strand at 1635.975 kb on + strand at 1636.073 kb on + strand at 1636.085 kb on + strand at 1636.086 kb on - strand at 1636.086 kb on - strand at 1636.106 kb on + strand at 1636.212 kb on + strand at 1636.212 kb on + strand at 1636.323 kb on + strand at 1636.385 kb on + strand at 1636.385 kb on + strand at 1636.386 kb on - strand at 1636.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,634,137 + RR42_RS07625 0.63 +0.9 1,634,138 - RR42_RS07625 0.63 -0.6 1,634,182 + RR42_RS07625 0.67 -0.5 1,634,182 + RR42_RS07625 0.67 +0.2 1,634,183 - RR42_RS07625 0.67 +0.0 1,634,183 - RR42_RS07625 0.67 -0.0 1,634,230 + RR42_RS07625 0.72 +1.2 1,634,230 + RR42_RS07625 0.72 +0.2 1,634,230 + RR42_RS07625 0.72 -2.1 1,634,231 - RR42_RS07625 0.72 +0.7 1,634,231 - RR42_RS07625 0.72 -0.2 1,634,231 - RR42_RS07625 0.72 -0.3 1,634,288 + RR42_RS07625 0.78 -1.9 1,634,298 + RR42_RS07625 0.79 +0.6 1,634,299 - RR42_RS07625 0.79 +0.4 1,634,299 - RR42_RS07625 0.79 +0.2 1,634,367 + RR42_RS07625 0.86 -0.3 1,634,367 + RR42_RS07625 0.86 +1.8 1,634,368 - RR42_RS07625 0.86 -0.9 1,634,499 + +0.3 1,634,499 + +0.8 1,634,499 + +0.8 1,634,500 - +0.4 1,634,638 + -1.3 1,634,638 + -1.0 1,634,638 + -0.1 1,634,638 + +0.2 1,634,639 - +0.2 1,634,639 - -0.1 1,634,639 - -0.7 1,634,639 - +1.0 1,634,668 - -0.3 1,634,668 - -0.5 1,634,722 - -0.0 1,634,722 - -1.5 1,634,722 - +0.7 1,634,773 + -0.2 1,635,106 - RR42_RS07630 0.49 -1.2 1,635,106 - RR42_RS07630 0.49 -0.7 1,635,378 - -0.2 1,635,378 - +1.7 1,635,378 - -0.5 1,635,407 + -1.8 1,635,407 + +0.5 1,635,407 + -0.3 1,635,408 - +1.4 1,635,408 - -0.5 1,635,438 + +0.3 1,635,438 + +0.5 1,635,438 + -0.3 1,635,438 + -0.2 1,635,439 - +0.4 1,635,439 - +0.6 1,635,508 + +0.2 1,635,508 + -0.1 1,635,509 - -0.8 1,635,509 - -0.1 1,635,509 - +0.2 1,635,926 - -0.9 1,635,926 - -0.8 1,635,926 - +0.9 1,635,935 + +0.3 1,635,936 - -0.7 1,635,936 - +0.6 1,635,936 - -0.4 1,635,975 + +0.7 1,636,073 + -2.9 1,636,085 + +0.9 1,636,086 - -0.9 1,636,086 - -0.7 1,636,106 + +1.1 1,636,212 + +0.3 1,636,212 + -0.2 1,636,323 + +0.2 1,636,385 + +0.8 1,636,385 + -0.7 1,636,386 - +0.6 1,636,390 - +0.2
Or see this region's nucleotide sequence