Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07200

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07185 and RR42_RS07190 are separated by 177 nucleotidesRR42_RS07190 and RR42_RS07195 are separated by 1 nucleotidesRR42_RS07195 and RR42_RS07200 are separated by 38 nucleotidesRR42_RS07200 and RR42_RS07205 overlap by 4 nucleotidesRR42_RS07205 and RR42_RS07210 are separated by 397 nucleotides RR42_RS07185: RR42_RS07185 - hypothetical protein, at 1,536,806 to 1,537,195 _RS07185 RR42_RS07190: RR42_RS07190 - hypothetical protein, at 1,537,373 to 1,537,642 _RS07190 RR42_RS07195: RR42_RS07195 - hypothetical protein, at 1,537,644 to 1,538,042 _RS07195 RR42_RS07200: RR42_RS07200 - hypothetical protein, at 1,538,081 to 1,538,329 _RS07200 RR42_RS07205: RR42_RS07205 - hypothetical protein, at 1,538,326 to 1,538,742 _RS07205 RR42_RS07210: RR42_RS07210 - hypothetical protein, at 1,539,140 to 1,539,517 _RS07210 Position (kb) 1538 1539Strain fitness (log2 ratio) -2 -1 0 1 2at 1537.249 kb on - strandat 1537.265 kb on + strandat 1537.266 kb on - strandat 1537.304 kb on + strandat 1537.305 kb on - strandat 1537.305 kb on - strandat 1537.342 kb on + strandat 1537.343 kb on - strandat 1537.343 kb on - strandat 1537.402 kb on + strand, within RR42_RS07190at 1537.402 kb on + strand, within RR42_RS07190at 1537.402 kb on + strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.432 kb on - strand, within RR42_RS07190at 1537.490 kb on + strand, within RR42_RS07190at 1537.504 kb on - strand, within RR42_RS07190at 1537.539 kb on - strand, within RR42_RS07190at 1537.620 kb on + strandat 1537.620 kb on + strandat 1537.621 kb on - strandat 1537.621 kb on - strandat 1537.621 kb on - strandat 1537.653 kb on - strandat 1537.766 kb on + strand, within RR42_RS07195at 1537.767 kb on - strand, within RR42_RS07195at 1537.836 kb on + strand, within RR42_RS07195at 1537.858 kb on + strand, within RR42_RS07195at 1537.858 kb on + strand, within RR42_RS07195at 1537.958 kb on + strand, within RR42_RS07195at 1537.958 kb on + strand, within RR42_RS07195at 1537.958 kb on + strand, within RR42_RS07195at 1537.959 kb on - strand, within RR42_RS07195at 1537.959 kb on - strand, within RR42_RS07195at 1538.292 kb on + strand, within RR42_RS07200at 1538.292 kb on + strand, within RR42_RS07200at 1538.292 kb on + strand, within RR42_RS07200at 1538.450 kb on - strand, within RR42_RS07205at 1538.498 kb on + strand, within RR42_RS07205at 1538.498 kb on + strand, within RR42_RS07205at 1538.498 kb on + strand, within RR42_RS07205at 1538.498 kb on + strand, within RR42_RS07205at 1538.498 kb on + strand, within RR42_RS07205at 1538.498 kb on + strand, within RR42_RS07205at 1538.498 kb on + strand, within RR42_RS07205at 1538.499 kb on - strand, within RR42_RS07205at 1538.499 kb on - strand, within RR42_RS07205at 1538.499 kb on - strand, within RR42_RS07205at 1538.508 kb on - strand, within RR42_RS07205at 1538.508 kb on - strand, within RR42_RS07205at 1538.524 kb on + strand, within RR42_RS07205at 1538.549 kb on + strand, within RR42_RS07205at 1538.577 kb on - strand, within RR42_RS07205at 1538.585 kb on - strand, within RR42_RS07205at 1538.812 kb on + strandat 1538.813 kb on - strandat 1538.814 kb on + strandat 1538.967 kb on + strandat 1539.040 kb on - strandat 1539.168 kb on + strandat 1539.208 kb on + strand, within RR42_RS07210at 1539.208 kb on + strand, within RR42_RS07210at 1539.208 kb on + strand, within RR42_RS07210at 1539.209 kb on - strand, within RR42_RS07210at 1539.209 kb on - strand, within RR42_RS07210at 1539.209 kb on - strand, within RR42_RS07210at 1539.209 kb on - strand, within RR42_RS07210at 1539.210 kb on + strand, within RR42_RS07210at 1539.211 kb on - strand, within RR42_RS07210at 1539.258 kb on + strand, within RR42_RS07210at 1539.258 kb on + strand, within RR42_RS07210at 1539.258 kb on + strand, within RR42_RS07210at 1539.259 kb on - strand, within RR42_RS07210at 1539.260 kb on + strand, within RR42_RS07210at 1539.260 kb on + strand, within RR42_RS07210at 1539.261 kb on - strand, within RR42_RS07210at 1539.261 kb on - strand, within RR42_RS07210at 1539.329 kb on - strand, within RR42_RS07210at 1539.329 kb on - strand, within RR42_RS07210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,537,249 - +0.9
1,537,265 + -0.9
1,537,266 - +0.8
1,537,304 + -1.3
1,537,305 - +0.2
1,537,305 - +0.1
1,537,342 + -0.2
1,537,343 - -0.3
1,537,343 - -0.9
1,537,402 + RR42_RS07190 0.11 -0.8
1,537,402 + RR42_RS07190 0.11 +0.8
1,537,402 + RR42_RS07190 0.11 -0.2
1,537,403 - RR42_RS07190 0.11 +0.5
1,537,403 - RR42_RS07190 0.11 -0.0
1,537,403 - RR42_RS07190 0.11 -0.5
1,537,403 - RR42_RS07190 0.11 +0.0
1,537,403 - RR42_RS07190 0.11 +0.2
1,537,403 - RR42_RS07190 0.11 -0.2
1,537,432 - RR42_RS07190 0.22 +2.0
1,537,490 + RR42_RS07190 0.43 -0.4
1,537,504 - RR42_RS07190 0.49 +0.3
1,537,539 - RR42_RS07190 0.61 +1.0
1,537,620 + +0.0
1,537,620 + -0.8
1,537,621 - -0.7
1,537,621 - +0.4
1,537,621 - -0.5
1,537,653 - -1.1
1,537,766 + RR42_RS07195 0.31 -0.5
1,537,767 - RR42_RS07195 0.31 -0.4
1,537,836 + RR42_RS07195 0.48 +0.0
1,537,858 + RR42_RS07195 0.54 +0.4
1,537,858 + RR42_RS07195 0.54 +0.5
1,537,958 + RR42_RS07195 0.79 -0.4
1,537,958 + RR42_RS07195 0.79 -0.5
1,537,958 + RR42_RS07195 0.79 -0.5
1,537,959 - RR42_RS07195 0.79 -1.0
1,537,959 - RR42_RS07195 0.79 +0.2
1,538,292 + RR42_RS07200 0.85 +0.3
1,538,292 + RR42_RS07200 0.85 +0.2
1,538,292 + RR42_RS07200 0.85 +2.0
1,538,450 - RR42_RS07205 0.30 +0.1
1,538,498 + RR42_RS07205 0.41 +0.8
1,538,498 + RR42_RS07205 0.41 +0.5
1,538,498 + RR42_RS07205 0.41 -1.1
1,538,498 + RR42_RS07205 0.41 -0.3
1,538,498 + RR42_RS07205 0.41 +0.7
1,538,498 + RR42_RS07205 0.41 -0.7
1,538,498 + RR42_RS07205 0.41 +0.1
1,538,499 - RR42_RS07205 0.41 -0.0
1,538,499 - RR42_RS07205 0.41 -0.3
1,538,499 - RR42_RS07205 0.41 -0.3
1,538,508 - RR42_RS07205 0.44 +1.4
1,538,508 - RR42_RS07205 0.44 +0.6
1,538,524 + RR42_RS07205 0.47 -0.1
1,538,549 + RR42_RS07205 0.53 -1.0
1,538,577 - RR42_RS07205 0.60 -0.1
1,538,585 - RR42_RS07205 0.62 +0.4
1,538,812 + -0.1
1,538,813 - +0.4
1,538,814 + -1.1
1,538,967 + -0.0
1,539,040 - +0.3
1,539,168 + +0.2
1,539,208 + RR42_RS07210 0.18 +0.8
1,539,208 + RR42_RS07210 0.18 -0.0
1,539,208 + RR42_RS07210 0.18 +0.6
1,539,209 - RR42_RS07210 0.18 -0.4
1,539,209 - RR42_RS07210 0.18 -0.4
1,539,209 - RR42_RS07210 0.18 +1.3
1,539,209 - RR42_RS07210 0.18 +1.3
1,539,210 + RR42_RS07210 0.19 -0.5
1,539,211 - RR42_RS07210 0.19 -0.4
1,539,258 + RR42_RS07210 0.31 +0.2
1,539,258 + RR42_RS07210 0.31 +0.6
1,539,258 + RR42_RS07210 0.31 -0.7
1,539,259 - RR42_RS07210 0.31 +0.5
1,539,260 + RR42_RS07210 0.32 -1.8
1,539,260 + RR42_RS07210 0.32 -0.1
1,539,261 - RR42_RS07210 0.32 +1.8
1,539,261 - RR42_RS07210 0.32 -1.6
1,539,329 - RR42_RS07210 0.50 -0.1
1,539,329 - RR42_RS07210 0.50 +0.1

Or see this region's nucleotide sequence