Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04920 and RR42_RS04925 are separated by 44 nucleotides RR42_RS04925 and RR42_RS04930 are separated by 123 nucleotides RR42_RS04930 and RR42_RS04935 are separated by 274 nucleotides
RR42_RS04920: RR42_RS04920 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,090,027 to 1,092,444
_RS04920
RR42_RS04925: RR42_RS04925 - transcription elongation factor GreB, at 1,092,489 to 1,093,085
_RS04925
RR42_RS04930: RR42_RS04930 - tRNA-Arg, at 1,093,209 to 1,093,285
_RS04930
RR42_RS04935: RR42_RS04935 - hypothetical protein, at 1,093,560 to 1,094,417
_RS04935
Position (kb)
1093
1094 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1092.331 kb on + strand at 1092.331 kb on + strand at 1092.332 kb on - strand at 1092.332 kb on - strand at 1092.557 kb on + strand, within RR42_RS04925 at 1092.600 kb on - strand, within RR42_RS04925 at 1092.727 kb on + strand, within RR42_RS04925 at 1092.727 kb on + strand, within RR42_RS04925 at 1092.728 kb on - strand, within RR42_RS04925 at 1092.728 kb on - strand, within RR42_RS04925 at 1092.859 kb on + strand, within RR42_RS04925 at 1092.860 kb on - strand, within RR42_RS04925 at 1092.865 kb on + strand, within RR42_RS04925 at 1092.866 kb on - strand, within RR42_RS04925 at 1092.976 kb on + strand, within RR42_RS04925 at 1092.976 kb on + strand, within RR42_RS04925 at 1092.994 kb on + strand, within RR42_RS04925 at 1092.994 kb on + strand, within RR42_RS04925 at 1092.994 kb on + strand, within RR42_RS04925 at 1092.995 kb on - strand, within RR42_RS04925 at 1092.995 kb on - strand, within RR42_RS04925 at 1093.114 kb on + strand at 1093.115 kb on - strand at 1093.116 kb on + strand at 1093.116 kb on + strand at 1093.116 kb on + strand at 1093.116 kb on + strand at 1093.116 kb on + strand at 1093.117 kb on - strand at 1093.117 kb on - strand at 1093.117 kb on - strand at 1093.117 kb on - strand at 1093.193 kb on - strand at 1093.193 kb on - strand at 1093.373 kb on - strand at 1093.449 kb on - strand at 1093.455 kb on + strand at 1093.456 kb on - strand at 1093.456 kb on - strand at 1093.759 kb on - strand, within RR42_RS04935 at 1093.877 kb on + strand, within RR42_RS04935 at 1093.877 kb on + strand, within RR42_RS04935 at 1093.877 kb on + strand, within RR42_RS04935 at 1093.878 kb on - strand, within RR42_RS04935 at 1093.878 kb on - strand, within RR42_RS04935 at 1093.878 kb on - strand, within RR42_RS04935 at 1093.884 kb on - strand, within RR42_RS04935 at 1093.945 kb on - strand, within RR42_RS04935 at 1094.175 kb on + strand, within RR42_RS04935 at 1094.176 kb on - strand, within RR42_RS04935 at 1094.176 kb on - strand, within RR42_RS04935
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,092,331 + -0.4 1,092,331 + +0.6 1,092,332 - -1.4 1,092,332 - +0.1 1,092,557 + RR42_RS04925 0.11 +0.9 1,092,600 - RR42_RS04925 0.19 +0.6 1,092,727 + RR42_RS04925 0.40 +0.7 1,092,727 + RR42_RS04925 0.40 -0.7 1,092,728 - RR42_RS04925 0.40 +0.0 1,092,728 - RR42_RS04925 0.40 +0.2 1,092,859 + RR42_RS04925 0.62 +0.4 1,092,860 - RR42_RS04925 0.62 +0.1 1,092,865 + RR42_RS04925 0.63 +0.3 1,092,866 - RR42_RS04925 0.63 +0.4 1,092,976 + RR42_RS04925 0.82 +0.3 1,092,976 + RR42_RS04925 0.82 +0.3 1,092,994 + RR42_RS04925 0.85 +1.0 1,092,994 + RR42_RS04925 0.85 +0.1 1,092,994 + RR42_RS04925 0.85 +0.3 1,092,995 - RR42_RS04925 0.85 -0.6 1,092,995 - RR42_RS04925 0.85 -1.1 1,093,114 + -0.4 1,093,115 - +0.7 1,093,116 + -0.1 1,093,116 + +0.4 1,093,116 + +0.1 1,093,116 + +1.9 1,093,116 + -0.2 1,093,117 - -0.9 1,093,117 - +0.7 1,093,117 - +0.1 1,093,117 - -0.2 1,093,193 - -1.7 1,093,193 - -0.6 1,093,373 - +0.1 1,093,449 - +0.1 1,093,455 + -0.2 1,093,456 - +0.6 1,093,456 - -0.0 1,093,759 - RR42_RS04935 0.23 -1.1 1,093,877 + RR42_RS04935 0.37 -0.7 1,093,877 + RR42_RS04935 0.37 +0.8 1,093,877 + RR42_RS04935 0.37 -2.4 1,093,878 - RR42_RS04935 0.37 +0.5 1,093,878 - RR42_RS04935 0.37 +0.3 1,093,878 - RR42_RS04935 0.37 -0.7 1,093,884 - RR42_RS04935 0.38 -1.1 1,093,945 - RR42_RS04935 0.45 -1.4 1,094,175 + RR42_RS04935 0.72 -0.4 1,094,176 - RR42_RS04935 0.72 -0.1 1,094,176 - RR42_RS04935 0.72 -0.4
Or see this region's nucleotide sequence