Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04165 and RR42_RS04170 are separated by 52 nucleotides RR42_RS04170 and RR42_RS04175 are separated by 20 nucleotides RR42_RS04175 and RR42_RS04180 overlap by 64 nucleotides
RR42_RS04165: RR42_RS04165 - hypothetical protein, at 920,330 to 921,544
_RS04165
RR42_RS04170: RR42_RS04170 - bactoprenol glucosyl transferase, at 921,597 to 922,622
_RS04170
RR42_RS04175: RR42_RS04175 - hypothetical protein, at 922,643 to 923,086
_RS04175
RR42_RS04180: RR42_RS04180 - methyltransferase, at 923,023 to 923,757
_RS04180
Position (kb)
921
922
923 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 920.662 kb on + strand, within RR42_RS04165 at 920.663 kb on - strand, within RR42_RS04165 at 920.663 kb on - strand, within RR42_RS04165 at 920.747 kb on + strand, within RR42_RS04165 at 921.195 kb on - strand, within RR42_RS04165 at 921.243 kb on - strand, within RR42_RS04165 at 921.243 kb on - strand, within RR42_RS04165 at 921.243 kb on - strand, within RR42_RS04165 at 921.243 kb on - strand, within RR42_RS04165 at 921.243 kb on - strand, within RR42_RS04165 at 921.317 kb on + strand, within RR42_RS04165 at 921.318 kb on - strand, within RR42_RS04165 at 921.417 kb on + strand, within RR42_RS04165 at 921.418 kb on - strand, within RR42_RS04165 at 921.515 kb on - strand at 921.515 kb on - strand at 921.516 kb on + strand at 921.516 kb on + strand at 921.516 kb on + strand at 921.516 kb on + strand at 921.610 kb on - strand at 921.610 kb on - strand at 921.614 kb on + strand at 921.615 kb on - strand at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.033 kb on - strand, within RR42_RS04170 at 922.043 kb on + strand, within RR42_RS04170 at 922.043 kb on + strand, within RR42_RS04170 at 922.047 kb on + strand, within RR42_RS04170 at 922.048 kb on - strand, within RR42_RS04170 at 922.198 kb on - strand, within RR42_RS04170 at 922.215 kb on - strand, within RR42_RS04170 at 922.303 kb on + strand, within RR42_RS04170 at 922.311 kb on + strand, within RR42_RS04170 at 922.311 kb on + strand, within RR42_RS04170 at 922.312 kb on - strand, within RR42_RS04170 at 922.312 kb on - strand, within RR42_RS04170 at 922.362 kb on - strand, within RR42_RS04170 at 922.474 kb on - strand, within RR42_RS04170 at 922.491 kb on + strand, within RR42_RS04170 at 922.515 kb on + strand, within RR42_RS04170 at 922.516 kb on - strand, within RR42_RS04170 at 922.644 kb on + strand at 922.722 kb on + strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.847 kb on - strand, within RR42_RS04175 at 922.847 kb on - strand, within RR42_RS04175 at 922.857 kb on + strand, within RR42_RS04175 at 922.991 kb on - strand, within RR42_RS04175 at 922.991 kb on - strand, within RR42_RS04175 at 923.105 kb on - strand, within RR42_RS04180 at 923.342 kb on + strand, within RR42_RS04180
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 920,662 + RR42_RS04165 0.27 -0.2 920,663 - RR42_RS04165 0.27 +0.1 920,663 - RR42_RS04165 0.27 -2.7 920,747 + RR42_RS04165 0.34 -1.2 921,195 - RR42_RS04165 0.71 +0.2 921,243 - RR42_RS04165 0.75 -0.2 921,243 - RR42_RS04165 0.75 +0.7 921,243 - RR42_RS04165 0.75 +0.9 921,243 - RR42_RS04165 0.75 +0.1 921,243 - RR42_RS04165 0.75 -0.3 921,317 + RR42_RS04165 0.81 +0.4 921,318 - RR42_RS04165 0.81 -0.1 921,417 + RR42_RS04165 0.89 -0.7 921,418 - RR42_RS04165 0.90 -0.0 921,515 - +0.4 921,515 - -0.4 921,516 + -0.4 921,516 + +2.5 921,516 + +0.1 921,516 + +0.5 921,610 - +1.6 921,610 - -0.2 921,614 + +0.7 921,615 - -0.2 922,029 + RR42_RS04170 0.42 +0.6 922,029 + RR42_RS04170 0.42 +0.9 922,029 + RR42_RS04170 0.42 +0.9 922,029 + RR42_RS04170 0.42 +0.8 922,033 - RR42_RS04170 0.42 +0.3 922,043 + RR42_RS04170 0.43 +0.8 922,043 + RR42_RS04170 0.43 -0.4 922,047 + RR42_RS04170 0.44 +1.7 922,048 - RR42_RS04170 0.44 +0.6 922,198 - RR42_RS04170 0.59 +0.6 922,215 - RR42_RS04170 0.60 -1.3 922,303 + RR42_RS04170 0.69 +1.6 922,311 + RR42_RS04170 0.70 -0.4 922,311 + RR42_RS04170 0.70 -0.1 922,312 - RR42_RS04170 0.70 +0.3 922,312 - RR42_RS04170 0.70 +0.8 922,362 - RR42_RS04170 0.75 -0.1 922,474 - RR42_RS04170 0.85 -1.9 922,491 + RR42_RS04170 0.87 +0.4 922,515 + RR42_RS04170 0.89 +2.9 922,516 - RR42_RS04170 0.90 +0.1 922,644 + +0.3 922,722 + RR42_RS04175 0.18 +0.4 922,723 - RR42_RS04175 0.18 +0.7 922,723 - RR42_RS04175 0.18 +0.5 922,723 - RR42_RS04175 0.18 +0.1 922,847 - RR42_RS04175 0.46 +0.6 922,847 - RR42_RS04175 0.46 -0.0 922,857 + RR42_RS04175 0.48 +0.9 922,991 - RR42_RS04175 0.78 -0.5 922,991 - RR42_RS04175 0.78 -1.7 923,105 - RR42_RS04180 0.11 +0.9 923,342 + RR42_RS04180 0.43 -0.6
Or see this region's nucleotide sequence