Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04170

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04165 and RR42_RS04170 are separated by 52 nucleotidesRR42_RS04170 and RR42_RS04175 are separated by 20 nucleotidesRR42_RS04175 and RR42_RS04180 overlap by 64 nucleotides RR42_RS04165: RR42_RS04165 - hypothetical protein, at 920,330 to 921,544 _RS04165 RR42_RS04170: RR42_RS04170 - bactoprenol glucosyl transferase, at 921,597 to 922,622 _RS04170 RR42_RS04175: RR42_RS04175 - hypothetical protein, at 922,643 to 923,086 _RS04175 RR42_RS04180: RR42_RS04180 - methyltransferase, at 923,023 to 923,757 _RS04180 Position (kb) 921 922 923Strain fitness (log2 ratio) -2 -1 0 1 2 3at 920.662 kb on + strand, within RR42_RS04165at 920.663 kb on - strand, within RR42_RS04165at 920.663 kb on - strand, within RR42_RS04165at 920.747 kb on + strand, within RR42_RS04165at 921.195 kb on - strand, within RR42_RS04165at 921.243 kb on - strand, within RR42_RS04165at 921.243 kb on - strand, within RR42_RS04165at 921.243 kb on - strand, within RR42_RS04165at 921.243 kb on - strand, within RR42_RS04165at 921.243 kb on - strand, within RR42_RS04165at 921.317 kb on + strand, within RR42_RS04165at 921.318 kb on - strand, within RR42_RS04165at 921.417 kb on + strand, within RR42_RS04165at 921.418 kb on - strand, within RR42_RS04165at 921.515 kb on - strandat 921.515 kb on - strandat 921.516 kb on + strandat 921.516 kb on + strandat 921.516 kb on + strandat 921.516 kb on + strandat 921.610 kb on - strandat 921.610 kb on - strandat 921.614 kb on + strandat 921.615 kb on - strandat 922.029 kb on + strand, within RR42_RS04170at 922.029 kb on + strand, within RR42_RS04170at 922.029 kb on + strand, within RR42_RS04170at 922.029 kb on + strand, within RR42_RS04170at 922.033 kb on - strand, within RR42_RS04170at 922.043 kb on + strand, within RR42_RS04170at 922.043 kb on + strand, within RR42_RS04170at 922.047 kb on + strand, within RR42_RS04170at 922.048 kb on - strand, within RR42_RS04170at 922.198 kb on - strand, within RR42_RS04170at 922.215 kb on - strand, within RR42_RS04170at 922.303 kb on + strand, within RR42_RS04170at 922.311 kb on + strand, within RR42_RS04170at 922.311 kb on + strand, within RR42_RS04170at 922.312 kb on - strand, within RR42_RS04170at 922.312 kb on - strand, within RR42_RS04170at 922.362 kb on - strand, within RR42_RS04170at 922.474 kb on - strand, within RR42_RS04170at 922.491 kb on + strand, within RR42_RS04170at 922.515 kb on + strand, within RR42_RS04170at 922.516 kb on - strand, within RR42_RS04170at 922.644 kb on + strandat 922.722 kb on + strand, within RR42_RS04175at 922.723 kb on - strand, within RR42_RS04175at 922.723 kb on - strand, within RR42_RS04175at 922.723 kb on - strand, within RR42_RS04175at 922.847 kb on - strand, within RR42_RS04175at 922.847 kb on - strand, within RR42_RS04175at 922.857 kb on + strand, within RR42_RS04175at 922.991 kb on - strand, within RR42_RS04175at 922.991 kb on - strand, within RR42_RS04175at 923.105 kb on - strand, within RR42_RS04180at 923.342 kb on + strand, within RR42_RS04180

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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920,662 + RR42_RS04165 0.27 -0.2
920,663 - RR42_RS04165 0.27 +0.1
920,663 - RR42_RS04165 0.27 -2.7
920,747 + RR42_RS04165 0.34 -1.2
921,195 - RR42_RS04165 0.71 +0.2
921,243 - RR42_RS04165 0.75 -0.2
921,243 - RR42_RS04165 0.75 +0.7
921,243 - RR42_RS04165 0.75 +0.9
921,243 - RR42_RS04165 0.75 +0.1
921,243 - RR42_RS04165 0.75 -0.3
921,317 + RR42_RS04165 0.81 +0.4
921,318 - RR42_RS04165 0.81 -0.1
921,417 + RR42_RS04165 0.89 -0.7
921,418 - RR42_RS04165 0.90 -0.0
921,515 - +0.4
921,515 - -0.4
921,516 + -0.4
921,516 + +2.5
921,516 + +0.1
921,516 + +0.5
921,610 - +1.6
921,610 - -0.2
921,614 + +0.7
921,615 - -0.2
922,029 + RR42_RS04170 0.42 +0.6
922,029 + RR42_RS04170 0.42 +0.9
922,029 + RR42_RS04170 0.42 +0.9
922,029 + RR42_RS04170 0.42 +0.8
922,033 - RR42_RS04170 0.42 +0.3
922,043 + RR42_RS04170 0.43 +0.8
922,043 + RR42_RS04170 0.43 -0.4
922,047 + RR42_RS04170 0.44 +1.7
922,048 - RR42_RS04170 0.44 +0.6
922,198 - RR42_RS04170 0.59 +0.6
922,215 - RR42_RS04170 0.60 -1.3
922,303 + RR42_RS04170 0.69 +1.6
922,311 + RR42_RS04170 0.70 -0.4
922,311 + RR42_RS04170 0.70 -0.1
922,312 - RR42_RS04170 0.70 +0.3
922,312 - RR42_RS04170 0.70 +0.8
922,362 - RR42_RS04170 0.75 -0.1
922,474 - RR42_RS04170 0.85 -1.9
922,491 + RR42_RS04170 0.87 +0.4
922,515 + RR42_RS04170 0.89 +2.9
922,516 - RR42_RS04170 0.90 +0.1
922,644 + +0.3
922,722 + RR42_RS04175 0.18 +0.4
922,723 - RR42_RS04175 0.18 +0.7
922,723 - RR42_RS04175 0.18 +0.5
922,723 - RR42_RS04175 0.18 +0.1
922,847 - RR42_RS04175 0.46 +0.6
922,847 - RR42_RS04175 0.46 -0.0
922,857 + RR42_RS04175 0.48 +0.9
922,991 - RR42_RS04175 0.78 -0.5
922,991 - RR42_RS04175 0.78 -1.7
923,105 - RR42_RS04180 0.11 +0.9
923,342 + RR42_RS04180 0.43 -0.6

Or see this region's nucleotide sequence