Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03495 and RR42_RS03500 are separated by 4 nucleotides RR42_RS03500 and RR42_RS03505 are separated by 88 nucleotides RR42_RS03505 and RR42_RS03510 are separated by 477 nucleotides
RR42_RS03495: RR42_RS03495 - type VI secretion protein, at 775,627 to 777,507
_RS03495
RR42_RS03500: RR42_RS03500 - hypothetical protein, at 777,512 to 778,042
_RS03500
RR42_RS03505: RR42_RS03505 - replication/virulence associated protein, at 778,131 to 778,712
_RS03505
RR42_RS03510: RR42_RS03510 - ATPase AAA, at 779,190 to 781,910
_RS03510
Position (kb) 778
779 Strain fitness (log2 ratio) -1
0
1 at 777.260 kb on + strand, within RR42_RS03495 at 777.260 kb on + strand, within RR42_RS03495 at 777.260 kb on + strand, within RR42_RS03495 at 777.260 kb on + strand, within RR42_RS03495 at 777.295 kb on - strand, within RR42_RS03495 at 777.375 kb on - strand at 777.464 kb on + strand at 777.464 kb on + strand at 777.465 kb on - strand at 777.482 kb on + strand at 777.483 kb on - strand at 777.639 kb on + strand, within RR42_RS03500 at 777.640 kb on - strand, within RR42_RS03500 at 777.719 kb on - strand, within RR42_RS03500 at 777.754 kb on + strand, within RR42_RS03500 at 777.768 kb on + strand, within RR42_RS03500 at 777.769 kb on - strand, within RR42_RS03500 at 777.769 kb on - strand, within RR42_RS03500 at 777.769 kb on - strand, within RR42_RS03500 at 777.769 kb on - strand, within RR42_RS03500 at 777.795 kb on + strand, within RR42_RS03500 at 777.795 kb on + strand, within RR42_RS03500 at 777.873 kb on + strand, within RR42_RS03500 at 777.873 kb on + strand, within RR42_RS03500 at 777.874 kb on - strand, within RR42_RS03500 at 777.874 kb on - strand, within RR42_RS03500 at 777.874 kb on - strand, within RR42_RS03500 at 777.924 kb on + strand, within RR42_RS03500 at 777.924 kb on + strand, within RR42_RS03500 at 778.426 kb on - strand, within RR42_RS03505 at 779.090 kb on + strand at 779.491 kb on - strand, within RR42_RS03510 at 779.609 kb on - strand, within RR42_RS03510 at 779.679 kb on + strand, within RR42_RS03510 at 779.688 kb on - strand, within RR42_RS03510
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 777,260 + RR42_RS03495 0.87 +0.0 777,260 + RR42_RS03495 0.87 -0.2 777,260 + RR42_RS03495 0.87 +0.0 777,260 + RR42_RS03495 0.87 -0.1 777,295 - RR42_RS03495 0.89 -0.2 777,375 - -1.1 777,464 + -0.2 777,464 + -0.9 777,465 - -1.2 777,482 + -0.7 777,483 - +0.3 777,639 + RR42_RS03500 0.24 -0.0 777,640 - RR42_RS03500 0.24 +0.0 777,719 - RR42_RS03500 0.39 +0.3 777,754 + RR42_RS03500 0.46 +0.0 777,768 + RR42_RS03500 0.48 -0.3 777,769 - RR42_RS03500 0.48 -0.3 777,769 - RR42_RS03500 0.48 -1.0 777,769 - RR42_RS03500 0.48 +0.1 777,769 - RR42_RS03500 0.48 +0.0 777,795 + RR42_RS03500 0.53 -0.1 777,795 + RR42_RS03500 0.53 +0.5 777,873 + RR42_RS03500 0.68 +0.1 777,873 + RR42_RS03500 0.68 +0.9 777,874 - RR42_RS03500 0.68 -0.2 777,874 - RR42_RS03500 0.68 -1.5 777,874 - RR42_RS03500 0.68 -0.8 777,924 + RR42_RS03500 0.78 -1.5 777,924 + RR42_RS03500 0.78 -0.2 778,426 - RR42_RS03505 0.51 +0.4 779,090 + +0.4 779,491 - RR42_RS03510 0.11 +0.9 779,609 - RR42_RS03510 0.15 +1.3 779,679 + RR42_RS03510 0.18 -0.5 779,688 - RR42_RS03510 0.18 +0.1
Or see this region's nucleotide sequence