Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02270

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02265 and RR42_RS02270 are separated by 297 nucleotidesRR42_RS02270 and RR42_RS02275 are separated by 119 nucleotides RR42_RS02265: RR42_RS02265 - excinuclease ABC subunit A, at 502,573 to 508,392 _RS02265 RR42_RS02270: RR42_RS02270 - hypothetical protein, at 508,690 to 508,974 _RS02270 RR42_RS02275: RR42_RS02275 - aspartate aminotransferase, at 509,094 to 510,287 _RS02275 Position (kb) 508 509Strain fitness (log2 ratio) -1 0 1 2at 507.955 kb on - strandat 507.997 kb on + strandat 508.126 kb on + strandat 508.126 kb on + strandat 508.127 kb on - strandat 508.127 kb on - strandat 508.871 kb on - strand, within RR42_RS02270at 509.033 kb on + strandat 509.075 kb on + strandat 509.076 kb on - strandat 509.305 kb on - strand, within RR42_RS02275at 509.305 kb on - strand, within RR42_RS02275at 509.606 kb on + strand, within RR42_RS02275at 509.606 kb on + strand, within RR42_RS02275at 509.607 kb on - strand, within RR42_RS02275at 509.730 kb on + strand, within RR42_RS02275at 509.731 kb on - strand, within RR42_RS02275at 509.731 kb on - strand, within RR42_RS02275at 509.742 kb on + strand, within RR42_RS02275at 509.743 kb on - strand, within RR42_RS02275at 509.743 kb on - strand, within RR42_RS02275at 509.917 kb on - strand, within RR42_RS02275at 509.917 kb on - strand, within RR42_RS02275

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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507,955 - -1.2
507,997 + +0.3
508,126 + -0.2
508,126 + +0.3
508,127 - +0.5
508,127 - +0.4
508,871 - RR42_RS02270 0.64 +0.7
509,033 + -0.3
509,075 + -0.2
509,076 - -0.3
509,305 - RR42_RS02275 0.18 +0.1
509,305 - RR42_RS02275 0.18 -0.6
509,606 + RR42_RS02275 0.43 -0.5
509,606 + RR42_RS02275 0.43 +1.8
509,607 - RR42_RS02275 0.43 -0.5
509,730 + RR42_RS02275 0.53 +0.8
509,731 - RR42_RS02275 0.53 -0.6
509,731 - RR42_RS02275 0.53 +0.6
509,742 + RR42_RS02275 0.54 +0.1
509,743 - RR42_RS02275 0.54 +0.3
509,743 - RR42_RS02275 0.54 +0.3
509,917 - RR42_RS02275 0.69 +0.5
509,917 - RR42_RS02275 0.69 -0.7

Or see this region's nucleotide sequence