Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08075

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE
1,478,762	-		MMJJ_RS08070	0.51	+0.6
1,478,793	-		MMJJ_RS08070	0.53	+0.3
1,478,793	-		MMJJ_RS08070	0.53	-0.5
1,478,793	-		MMJJ_RS08070	0.53	+0.3
1,478,794	+		MMJJ_RS08070	0.53	-0.5
1,478,968	+		MMJJ_RS08070	0.64	+0.1
1,478,968	+		MMJJ_RS08070	0.64	+0.5
1,479,009	+		MMJJ_RS08070	0.67	+0.0
1,479,086	-		MMJJ_RS08070	0.72	-0.7
1,479,148	+		MMJJ_RS08070	0.76	-0.3
1,479,148	+		MMJJ_RS08070	0.76	-0.4
1,479,155	+		MMJJ_RS08070	0.76	-0.8
1,479,172	-		MMJJ_RS08070	0.77	+1.2
1,479,173	+		MMJJ_RS08070	0.77	-0.8
1,479,191	+		MMJJ_RS08070	0.79	-0.4
1,479,191	+		MMJJ_RS08070	0.79	-0.7
1,479,191	+		MMJJ_RS08070	0.79	-1.0
1,479,191	+		MMJJ_RS08070	0.79	+0.2
1,479,276	+		MMJJ_RS08070	0.84	+0.3
1,479,329	-		MMJJ_RS08070	0.87	-0.6
1,479,381	-				+0.6
1,479,384	+				+0.3
1,479,402	+				+0.1
1,479,402	+				-1.3
1,479,403	-				+0.4
1,479,404	+				+0.2
1,479,412	+				+0.8
1,479,469	+				-2.0
1,479,501	+				+0.1
1,479,523	+				-0.5
1,479,584	-				-0.8
1,479,585	+				+0.2
1,479,585	+				-0.3
1,479,585	+				+0.6
1,479,588	-				+0.5
1,479,588	-				+0.3
1,479,588	-				-0.1
1,479,588	-				+0.2
1,479,588	-				+0.4
1,479,588	-				+0.2
1,479,588	-				-0.1
1,479,589	+				+0.9
1,479,590	-				-0.2
1,479,590	-				+0.5
1,479,591	+				+0.7
1,479,591	+				+1.1
1,479,591	+				-0.2
1,479,591	+				+0.6
1,479,593	+				-0.5
1,479,607	-				+0.0
1,479,625	+				+1.3
1,479,635	-				+0.1
1,479,825	+				-1.9
1,480,003	+		MMJJ_RS08075	0.18	+0.6
1,480,088	+		MMJJ_RS08075	0.22	+1.0
1,480,156	-		MMJJ_RS08075	0.25	-0.0
1,480,157	+		MMJJ_RS08075	0.25	-0.0
1,480,157	+		MMJJ_RS08075	0.25	+1.2
1,480,178	+		MMJJ_RS08075	0.26	+0.2
1,480,178	+		MMJJ_RS08075	0.26	+1.0
1,480,191	-		MMJJ_RS08075	0.27	-0.2
1,480,192	+		MMJJ_RS08075	0.27	+0.3
1,480,192	+		MMJJ_RS08075	0.27	-1.1
1,480,231	+		MMJJ_RS08075	0.29	-0.4
1,480,290	-		MMJJ_RS08075	0.32	+1.0
1,480,729	-		MMJJ_RS08075	0.54	-0.6
1,480,730	+				-0.1
1,480,747	+		MMJJ_RS08075	0.55	-0.2
1,480,751	-		MMJJ_RS08075	0.55	-0.9
1,480,752	+		MMJJ_RS08075	0.55	-0.5
1,480,752	+		MMJJ_RS08075	0.55	-0.4
1,480,753	-		MMJJ_RS08075	0.55	+1.2
1,480,754	+		MMJJ_RS08075	0.55	-0.3
1,480,808	+		MMJJ_RS08075	0.58	+0.2
1,480,830	-		MMJJ_RS08075	0.59	+0.5
1,480,905	-		MMJJ_RS08075	0.63	-0.1
1,480,906	+		MMJJ_RS08075	0.63	+0.1
1,480,944	-		MMJJ_RS08075	0.65	+0.3
1,480,944	-		MMJJ_RS08075	0.65	-0.0
1,480,944	-		MMJJ_RS08075	0.65	-0.0
1,480,945	+		MMJJ_RS08075	0.65	-0.0
1,480,986	-		MMJJ_RS08075	0.67	-0.2
1,480,987	+		MMJJ_RS08075	0.67	+0.6
1,481,005	-		MMJJ_RS08075	0.68	+0.5
1,481,039	+		MMJJ_RS08075	0.69	+1.0
1,481,065	-		MMJJ_RS08075	0.71	-0.1
1,481,114	-		MMJJ_RS08075	0.73	+0.2
1,481,122	+		MMJJ_RS08075	0.73	-0.4
1,481,122	+		MMJJ_RS08075	0.73	-0.3
1,481,143	-		MMJJ_RS08075	0.74	-0.1
1,481,143	-		MMJJ_RS08075	0.74	+0.2
1,481,143	-		MMJJ_RS08075	0.74	-0.5
1,481,143	-		MMJJ_RS08075	0.74	+0.0
1,481,144	+		MMJJ_RS08075	0.74	-0.1
1,481,144	+		MMJJ_RS08075	0.74	+1.1
1,481,144	+		MMJJ_RS08075	0.74	+0.2
1,481,145	-		MMJJ_RS08075	0.75	+0.0
1,481,146	+		MMJJ_RS08075	0.75	+1.6
1,481,146	+		MMJJ_RS08075	0.75	-0.1
1,481,146	+		MMJJ_RS08075	0.75	+0.6
1,481,147	-		MMJJ_RS08075	0.75	+0.9
1,481,147	-		MMJJ_RS08075	0.75	-0.1
1,481,147	-		MMJJ_RS08075	0.75	+0.1
1,481,148	+		MMJJ_RS08075	0.75	+0.4
1,481,148	+		MMJJ_RS08075	0.75	-0.0
1,481,148	+		MMJJ_RS08075	0.75	-0.1
1,481,148	+		MMJJ_RS08075	0.75	-0.4
1,481,153	-		MMJJ_RS08075	0.75	-0.2
1,481,227	+		MMJJ_RS08075	0.79	-0.1
1,481,284	-		MMJJ_RS08075	0.81	+0.3
1,481,286	-		MMJJ_RS08075	0.82	+0.1
1,481,289	-		MMJJ_RS08075	0.82	+0.0
1,481,290	+		MMJJ_RS08075	0.82	+0.0
1,481,290	+		MMJJ_RS08075	0.82	+0.5
1,481,294	+		MMJJ_RS08075	0.82	+0.4
1,481,418	-		MMJJ_RS08075	0.88	+0.3
1,481,434	-		MMJJ_RS08075	0.89	-0.0
1,481,436	-		MMJJ_RS08075	0.89	+0.4
1,481,437	+		MMJJ_RS08075	0.89	-0.5
1,481,507	+				+0.0
1,481,579	+				+0.1
1,481,585	+				+0.3
1,481,591	-				+0.2
1,481,591	-				-1.4
1,481,592	+				-0.6
1,481,638	-				+1.1
1,481,638	-				+0.0
1,481,692	-				-0.7
1,481,693	+				-0.7
1,481,693	+				-0.8
1,481,693	+				-0.1
1,481,693	+				-0.1
1,481,700	-				-0.1
1,481,700	-				+0.2
1,481,700	-				-0.4
1,481,700	-				-0.2
1,481,700	-				+0.1
1,481,700	-				-1.0
1,481,700	-				+0.4
1,481,700	-				+0.4
1,481,700	-				-0.2
1,481,700	-				+0.0
1,481,700	-				+0.5
1,481,700	-				-0.1
1,481,701	+				+0.1
1,481,701	+				+0.4
1,481,701	+				+0.5
1,481,701	+				-0.7
1,481,701	+				+0.3
1,481,701	+				-0.8
1,481,702	-				+0.2
1,481,702	-				+0.5
1,481,702	-				-1.4
1,481,702	-				+0.1
1,481,703	+				-0.4
1,481,703	+				+1.3
1,481,703	+				-0.3
1,481,705	-				-1.7
1,481,705	-				-0.5
1,481,705	-				-0.1
1,481,705	-				-0.4
1,481,705	-				+0.2
1,481,706	+				+1.2
1,481,706	+				+0.2
1,481,719	-				+0.3
1,481,719	-				+0.3
1,481,722	+				-0.8
1,481,722	+				-0.8
1,481,723	-				-1.8
1,481,723	-				-0.1
1,481,723	-				-0.7
1,481,724	+				-1.3
1,481,724	+				-0.7
1,481,724	+				-0.8
1,481,724	+				-0.6
1,481,732	+				-0.5
1,481,732	+				-3.9
1,481,739	+				-3.5
1,481,749	+				-0.5
1,481,818	+				-3.1
1,481,818	+				-2.8
1,481,818	+				-4.2
1,481,830	-				-0.2
1,481,831	+				-2.2
1,481,832	-				-1.7
1,481,833	+				+0.1
1,481,833	+				-1.9
1,481,878	-				-2.7
1,481,879	+				-2.2
1,482,080	+		MMJJ_RS08080	0.24	-2.4
1,482,080	+		MMJJ_RS08080	0.24	-2.5
1,482,100	+		MMJJ_RS08080	0.25	-2.2
1,482,106	+		MMJJ_RS08080	0.26	-3.1
1,482,150	-		MMJJ_RS08080	0.29	+0.3
1,482,151	+		MMJJ_RS08080	0.29	-2.1
1,482,204	-		MMJJ_RS08080	0.34	-1.7
1,482,370	+		MMJJ_RS08080	0.47	-2.8
1,482,381	+		MMJJ_RS08080	0.48	-2.2
1,482,433	+		MMJJ_RS08080	0.52	-3.8
1,482,433	+		MMJJ_RS08080	0.52	-4.2
1,482,537	-		MMJJ_RS08080	0.60	-0.9
1,482,565	+		MMJJ_RS08080	0.63	-2.5
1,482,615	-		MMJJ_RS08080	0.67	-3.3
1,482,616	+		MMJJ_RS08080	0.67	-2.6
1,482,625	+		MMJJ_RS08080	0.67	-3.7