Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06795

Experiment: R2A with m-arsenite 0.0390625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS06785 and LRK54_RS06790 overlap by 1 nucleotidesLRK54_RS06790 and LRK54_RS06795 are separated by 132 nucleotidesLRK54_RS06795 and LRK54_RS06800 are separated by 77 nucleotidesLRK54_RS06800 and LRK54_RS06805 are separated by 10 nucleotides LRK54_RS06785: LRK54_RS06785 - protein-disulfide reductase DsbD, at 1,459,974 to 1,462,163 _RS06785 LRK54_RS06790: LRK54_RS06790 - TlpA family protein disulfide reductase, at 1,462,163 to 1,462,699 _RS06790 LRK54_RS06795: LRK54_RS06795 - type II 3-dehydroquinate dehydratase, at 1,462,832 to 1,463,284 _RS06795 LRK54_RS06800: LRK54_RS06800 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 1,463,362 to 1,463,820 _RS06800 LRK54_RS06805: LRK54_RS06805 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,463,831 to 1,465,198 _RS06805 Position (kb) 1462 1463 1464Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1461.984 kb on + strandat 1462.226 kb on + strand, within LRK54_RS06790at 1462.226 kb on + strand, within LRK54_RS06790at 1462.227 kb on - strand, within LRK54_RS06790at 1462.338 kb on - strand, within LRK54_RS06790at 1462.338 kb on - strand, within LRK54_RS06790at 1462.518 kb on - strand, within LRK54_RS06790at 1462.573 kb on + strand, within LRK54_RS06790at 1462.573 kb on + strand, within LRK54_RS06790at 1462.573 kb on + strand, within LRK54_RS06790at 1462.573 kb on + strand, within LRK54_RS06790at 1462.574 kb on - strand, within LRK54_RS06790at 1462.574 kb on - strand, within LRK54_RS06790at 1462.574 kb on - strand, within LRK54_RS06790at 1462.592 kb on + strand, within LRK54_RS06790at 1462.592 kb on + strand, within LRK54_RS06790at 1462.592 kb on + strand, within LRK54_RS06790at 1462.592 kb on + strand, within LRK54_RS06790at 1462.592 kb on + strand, within LRK54_RS06790at 1462.592 kb on + strand, within LRK54_RS06790at 1462.593 kb on - strand, within LRK54_RS06790at 1462.593 kb on - strand, within LRK54_RS06790at 1462.593 kb on - strand, within LRK54_RS06790at 1462.593 kb on - strand, within LRK54_RS06790at 1462.593 kb on - strand, within LRK54_RS06790at 1462.593 kb on - strand, within LRK54_RS06790at 1462.593 kb on - strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.594 kb on + strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.595 kb on - strand, within LRK54_RS06790at 1462.599 kb on + strand, within LRK54_RS06790at 1462.600 kb on - strand, within LRK54_RS06790at 1462.600 kb on - strand, within LRK54_RS06790at 1462.600 kb on - strand, within LRK54_RS06790at 1462.600 kb on - strand, within LRK54_RS06790at 1462.600 kb on - strand, within LRK54_RS06790at 1462.702 kb on + strandat 1462.702 kb on + strandat 1462.702 kb on + strandat 1462.702 kb on + strandat 1462.702 kb on + strandat 1462.702 kb on + strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.703 kb on - strandat 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1462.898 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.177 kb on + strand, within LRK54_RS06795at 1463.178 kb on - strand, within LRK54_RS06795

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.0390625 mM
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1,461,984 + -1.2
1,462,226 + LRK54_RS06790 0.12 -2.2
1,462,226 + LRK54_RS06790 0.12 -0.1
1,462,227 - LRK54_RS06790 0.12 -0.1
1,462,338 - LRK54_RS06790 0.33 -2.3
1,462,338 - LRK54_RS06790 0.33 +0.2
1,462,518 - LRK54_RS06790 0.66 -0.2
1,462,573 + LRK54_RS06790 0.76 -0.3
1,462,573 + LRK54_RS06790 0.76 +0.2
1,462,573 + LRK54_RS06790 0.76 -0.8
1,462,573 + LRK54_RS06790 0.76 +0.4
1,462,574 - LRK54_RS06790 0.77 -0.1
1,462,574 - LRK54_RS06790 0.77 +1.2
1,462,574 - LRK54_RS06790 0.77 -2.0
1,462,592 + LRK54_RS06790 0.80 +1.8
1,462,592 + LRK54_RS06790 0.80 -0.3
1,462,592 + LRK54_RS06790 0.80 -1.2
1,462,592 + LRK54_RS06790 0.80 +0.2
1,462,592 + LRK54_RS06790 0.80 +0.3
1,462,592 + LRK54_RS06790 0.80 -0.5
1,462,593 - LRK54_RS06790 0.80 -0.9
1,462,593 - LRK54_RS06790 0.80 +0.3
1,462,593 - LRK54_RS06790 0.80 +0.2
1,462,593 - LRK54_RS06790 0.80 -1.2
1,462,593 - LRK54_RS06790 0.80 -0.0
1,462,593 - LRK54_RS06790 0.80 -0.4
1,462,593 - LRK54_RS06790 0.80 +0.2
1,462,594 + LRK54_RS06790 0.80 -0.7
1,462,594 + LRK54_RS06790 0.80 -0.4
1,462,594 + LRK54_RS06790 0.80 +0.4
1,462,594 + LRK54_RS06790 0.80 +1.1
1,462,594 + LRK54_RS06790 0.80 +0.3
1,462,594 + LRK54_RS06790 0.80 +0.7
1,462,594 + LRK54_RS06790 0.80 +1.2
1,462,594 + LRK54_RS06790 0.80 -0.3
1,462,594 + LRK54_RS06790 0.80 -0.4
1,462,594 + LRK54_RS06790 0.80 +1.0
1,462,594 + LRK54_RS06790 0.80 +1.1
1,462,594 + LRK54_RS06790 0.80 -1.9
1,462,594 + LRK54_RS06790 0.80 -0.6
1,462,594 + LRK54_RS06790 0.80 +0.0
1,462,594 + LRK54_RS06790 0.80 +0.3
1,462,594 + LRK54_RS06790 0.80 -0.5
1,462,594 + LRK54_RS06790 0.80 -0.4
1,462,594 + LRK54_RS06790 0.80 +1.4
1,462,594 + LRK54_RS06790 0.80 -0.4
1,462,594 + LRK54_RS06790 0.80 +0.0
1,462,594 + LRK54_RS06790 0.80 -0.2
1,462,594 + LRK54_RS06790 0.80 +1.8
1,462,594 + LRK54_RS06790 0.80 -1.0
1,462,594 + LRK54_RS06790 0.80 -0.3
1,462,594 + LRK54_RS06790 0.80 -1.7
1,462,595 - LRK54_RS06790 0.80 +0.7
1,462,595 - LRK54_RS06790 0.80 -0.4
1,462,595 - LRK54_RS06790 0.80 -0.4
1,462,595 - LRK54_RS06790 0.80 +0.1
1,462,595 - LRK54_RS06790 0.80 +1.6
1,462,595 - LRK54_RS06790 0.80 -0.4
1,462,595 - LRK54_RS06790 0.80 -0.2
1,462,595 - LRK54_RS06790 0.80 +0.8
1,462,595 - LRK54_RS06790 0.80 +0.4
1,462,595 - LRK54_RS06790 0.80 -0.2
1,462,595 - LRK54_RS06790 0.80 -1.0
1,462,595 - LRK54_RS06790 0.80 -1.0
1,462,595 - LRK54_RS06790 0.80 +0.6
1,462,595 - LRK54_RS06790 0.80 +0.1
1,462,595 - LRK54_RS06790 0.80 -0.6
1,462,595 - LRK54_RS06790 0.80 +0.8
1,462,595 - LRK54_RS06790 0.80 -0.8
1,462,595 - LRK54_RS06790 0.80 -0.6
1,462,595 - LRK54_RS06790 0.80 -2.2
1,462,595 - LRK54_RS06790 0.80 +0.0
1,462,595 - LRK54_RS06790 0.80 +3.4
1,462,595 - LRK54_RS06790 0.80 -1.2
1,462,595 - LRK54_RS06790 0.80 -1.8
1,462,595 - LRK54_RS06790 0.80 +2.4
1,462,599 + LRK54_RS06790 0.81 +0.8
1,462,600 - LRK54_RS06790 0.81 -0.1
1,462,600 - LRK54_RS06790 0.81 +0.2
1,462,600 - LRK54_RS06790 0.81 -0.4
1,462,600 - LRK54_RS06790 0.81 +0.9
1,462,600 - LRK54_RS06790 0.81 -0.8
1,462,702 + -0.8
1,462,702 + +0.1
1,462,702 + +1.6
1,462,702 + +0.0
1,462,702 + -0.1
1,462,702 + +0.4
1,462,703 - -0.7
1,462,703 - -0.5
1,462,703 - -0.1
1,462,703 - +1.3
1,462,703 - +0.0
1,462,703 - -0.1
1,462,703 - -0.9
1,462,703 - -1.0
1,462,703 - +0.2
1,462,703 - -2.0
1,462,898 + LRK54_RS06795 0.15 +1.1
1,462,898 + LRK54_RS06795 0.15 -1.4
1,462,898 + LRK54_RS06795 0.15 +0.7
1,462,898 + LRK54_RS06795 0.15 -0.8
1,462,898 + LRK54_RS06795 0.15 +0.0
1,462,898 + LRK54_RS06795 0.15 -2.5
1,462,898 + LRK54_RS06795 0.15 +0.0
1,462,898 + LRK54_RS06795 0.15 -1.2
1,462,898 + LRK54_RS06795 0.15 -1.0
1,462,898 + LRK54_RS06795 0.15 -1.4
1,462,898 + LRK54_RS06795 0.15 -0.4
1,462,898 + LRK54_RS06795 0.15 -2.0
1,463,177 + LRK54_RS06795 0.76 -0.8
1,463,177 + LRK54_RS06795 0.76 -1.8
1,463,177 + LRK54_RS06795 0.76 -0.9
1,463,177 + LRK54_RS06795 0.76 -1.0
1,463,177 + LRK54_RS06795 0.76 -0.6
1,463,177 + LRK54_RS06795 0.76 +0.9
1,463,177 + LRK54_RS06795 0.76 -1.7
1,463,177 + LRK54_RS06795 0.76 -0.3
1,463,177 + LRK54_RS06795 0.76 -1.8
1,463,177 + LRK54_RS06795 0.76 -1.5
1,463,177 + LRK54_RS06795 0.76 -0.8
1,463,177 + LRK54_RS06795 0.76 -0.3
1,463,177 + LRK54_RS06795 0.76 -1.3
1,463,177 + LRK54_RS06795 0.76 -0.9
1,463,177 + LRK54_RS06795 0.76 +0.0
1,463,177 + LRK54_RS06795 0.76 +1.4
1,463,177 + LRK54_RS06795 0.76 -1.0
1,463,178 - LRK54_RS06795 0.76 +1.4

Or see this region's nucleotide sequence