Experiment: R2A with m-arsenite 0.0390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00345 and LRK54_RS00350 are separated by 61 nucleotides LRK54_RS00350 and LRK54_RS00355 are separated by 91 nucleotides LRK54_RS00355 and LRK54_RS00360 are separated by 303 nucleotides LRK54_RS00360 and LRK54_RS00365 are separated by 83 nucleotides LRK54_RS00365 and LRK54_RS00370 are separated by 129 nucleotides LRK54_RS00370 and LRK54_RS00375 are separated by 66 nucleotides
LRK54_RS00345: LRK54_RS00345 - TraB/GumN family protein, at 78,743 to 79,978
_RS00345
LRK54_RS00350: LRK54_RS00350 - tRNA-Leu, at 80,040 to 80,126
_RS00350
LRK54_RS00355: LRK54_RS00355 - HU family DNA-binding protein, at 80,218 to 80,598
_RS00355
LRK54_RS00360: LRK54_RS00360 - tRNA-Cys, at 80,902 to 80,975
_RS00360
LRK54_RS00365: LRK54_RS00365 - tRNA-Gly, at 81,059 to 81,134
_RS00365
LRK54_RS00370: LRK54_RS00370 - tRNA-Gly, at 81,264 to 81,339
_RS00370
LRK54_RS00375: LRK54_RS00375 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 81,406 to 82,008
_RS00375
Position (kb) 80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.657 kb on + strand at 80.658 kb on - strand at 80.658 kb on - strand at 80.750 kb on + strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand at 81.019 kb on - strand at 81.115 kb on - strand, within LRK54_RS00365 at 81.127 kb on - strand at 81.127 kb on - strand at 81.127 kb on - strand at 81.127 kb on - strand at 81.177 kb on - strand at 81.177 kb on - strand at 81.177 kb on - strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.223 kb on + strand at 81.224 kb on - strand at 81.224 kb on - strand at 81.224 kb on - strand at 81.224 kb on - strand at 81.224 kb on - strand at 81.224 kb on - strand at 81.358 kb on - strand at 81.358 kb on - strand at 81.358 kb on - strand at 81.358 kb on - strand at 81.361 kb on - strand at 81.361 kb on - strand at 81.361 kb on - strand at 81.361 kb on - strand at 81.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.0390625 mM remove 79,343 + LRK54_RS00345 0.49 -1.2 79,343 + LRK54_RS00345 0.49 +0.9 79,343 + LRK54_RS00345 0.49 +0.1 79,343 + LRK54_RS00345 0.49 -0.1 79,343 + LRK54_RS00345 0.49 -1.6 79,343 + LRK54_RS00345 0.49 -1.9 79,343 + LRK54_RS00345 0.49 -1.4 79,343 + LRK54_RS00345 0.49 -1.6 79,343 + LRK54_RS00345 0.49 -2.0 79,344 - LRK54_RS00345 0.49 -0.9 79,344 - LRK54_RS00345 0.49 -0.7 79,344 - LRK54_RS00345 0.49 -1.7 79,344 - LRK54_RS00345 0.49 -2.5 79,344 - LRK54_RS00345 0.49 -1.1 79,344 - LRK54_RS00345 0.49 -1.5 79,344 - LRK54_RS00345 0.49 -1.0 79,344 - LRK54_RS00345 0.49 +0.1 79,940 + -3.3 79,940 + -0.7 79,940 + -1.8 79,940 + -2.1 79,940 + +0.1 79,940 + -0.1 79,940 + -2.8 79,941 - -2.4 79,941 - -1.2 79,941 - -0.7 79,941 - +0.9 79,941 - -0.3 79,941 - -1.0 79,941 - -0.3 79,941 - -1.6 79,941 - -0.6 80,003 + -0.6 80,003 + -0.6 80,003 + -0.3 80,003 + -0.3 80,003 + +0.9 80,003 + -0.2 80,003 + +0.3 80,003 + -0.2 80,003 + -1.0 80,003 + -1.5 80,003 + +0.1 80,003 + -0.8 80,003 + -1.0 80,003 + -0.2 80,003 + +1.2 80,003 + -2.9 80,003 + -0.5 80,003 + +2.5 80,003 + -0.0 80,003 + -0.3 80,003 + +1.1 80,003 + +0.8 80,004 - -0.5 80,004 - +0.9 80,004 - -2.3 80,004 - +0.2 80,004 - -1.5 80,004 - +0.8 80,004 - +0.6 80,004 - +0.5 80,004 - -0.3 80,004 - +0.1 80,004 - -0.5 80,004 - -1.1 80,004 - -1.4 80,004 - -0.8 80,004 - -1.5 80,004 - -0.9 80,004 - +0.2 80,004 - -0.1 80,004 - -0.3 80,004 - -1.1 80,004 - +3.1 80,004 - -0.5 80,004 - +0.7 80,004 - +0.1 80,004 - +0.2 80,616 + +0.3 80,616 + -2.6 80,616 + -1.7 80,616 + -0.1 80,616 + -1.1 80,616 + +1.2 80,616 + +1.1 80,616 + +0.1 80,616 + -1.2 80,616 + -0.5 80,616 + -1.3 80,616 + -1.3 80,616 + -1.3 80,616 + -1.3 80,616 + +0.1 80,616 + +0.9 80,616 + -0.1 80,616 + +1.6 80,616 + +0.4 80,616 + +1.7 80,616 + -0.1 80,617 - -1.1 80,617 - -0.5 80,617 - -0.4 80,617 - +0.5 80,617 - +0.3 80,617 - +0.4 80,617 - +1.5 80,617 - -0.7 80,617 - +0.8 80,617 - -2.0 80,617 - -0.4 80,617 - -2.2 80,617 - +0.3 80,617 - -0.5 80,617 - -0.0 80,617 - +3.5 80,617 - -1.6 80,634 + -1.8 80,634 + +0.4 80,634 + +0.3 80,634 + -0.4 80,634 + +0.1 80,634 + +0.4 80,634 + +0.2 80,634 + -0.3 80,634 + -0.1 80,634 + -0.5 80,634 + -1.6 80,634 + -0.8 80,634 + +0.3 80,634 + +0.5 80,634 + +1.1 80,634 + -0.1 80,634 + +0.1 80,635 - -1.1 80,635 - -0.7 80,635 - -0.5 80,635 - -0.5 80,635 - -0.9 80,635 - +0.3 80,635 - -0.2 80,635 - -0.1 80,635 - -0.9 80,635 - +0.9 80,635 - -0.3 80,635 - -1.2 80,635 - -1.5 80,635 - +1.6 80,635 - +0.1 80,635 - -2.1 80,635 - -1.5 80,657 + -0.3 80,658 - +1.8 80,658 - +0.9 80,750 + -1.4 80,751 - -0.3 80,751 - -0.5 80,751 - -0.3 80,751 - +0.1 80,751 - +0.1 81,019 - -0.5 81,115 - LRK54_RS00365 0.74 +0.1 81,127 - +1.5 81,127 - -0.3 81,127 - +0.1 81,127 - -1.1 81,177 - -0.1 81,177 - -0.6 81,177 - -0.1 81,223 + -0.6 81,223 + +0.0 81,223 + -0.9 81,223 + +0.9 81,223 + +0.0 81,223 + -0.3 81,223 + -0.3 81,223 + -0.3 81,223 + -0.8 81,223 + -0.3 81,223 + +0.1 81,223 + -0.6 81,223 + -0.1 81,224 - +1.1 81,224 - -0.4 81,224 - -0.2 81,224 - +0.1 81,224 - -0.8 81,224 - +0.1 81,358 - +0.9 81,358 - +0.2 81,358 - -0.9 81,358 - -1.0 81,361 - -1.3 81,361 - +0.8 81,361 - +0.9 81,361 - -0.9 81,361 - -1.3
Or see this region's nucleotide sequence