Experiment: R2A with m-arsenite 0.0390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00335 and LRK54_RS00340 are separated by 59 nucleotides LRK54_RS00340 and LRK54_RS00345 are separated by 121 nucleotides
LRK54_RS00335: LRK54_RS00335 - agmatine deiminase family protein, at 76,634 to 77,671
_RS00335
LRK54_RS00340: LRK54_RS00340 - carbon-nitrogen hydrolase, at 77,731 to 78,621
_RS00340
LRK54_RS00345: LRK54_RS00345 - TraB/GumN family protein, at 78,743 to 79,978
_RS00345
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 77.683 kb on + strand at 77.684 kb on - strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.718 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.0390625 mM remove 77,683 + +0.1 77,684 - +0.3 78,619 + +0.1 78,619 + +0.8 78,619 + +0.3 78,619 + -0.4 78,619 + -0.2 78,620 - +0.9 78,620 - -1.1 78,620 - -0.1 78,620 - +0.6 78,620 - +1.9 78,620 - -1.1 78,620 - +0.2 78,718 + +1.2 78,830 + -1.4 78,830 + -2.2 78,830 + -0.7 78,830 + -1.6 78,830 + -1.1 78,830 + -2.1 78,830 + -0.4 78,830 + -0.1 78,830 + -1.1 78,830 + -1.5 78,830 + -0.1 78,830 + -1.4 78,830 + -1.3 78,830 + -1.2 78,830 + -0.9 78,830 + -0.8 78,831 - +0.5 78,831 - -0.9 78,831 - +1.1 78,831 - +0.5 78,831 - -0.3 78,831 - +0.1 78,831 - -1.0 78,831 - -0.1 78,831 - -1.4 78,831 - -3.1 78,831 - -0.5 78,831 - +1.5 78,831 - -1.0 78,831 - -1.7 78,831 - -0.3 78,831 - +0.1 78,831 - -2.0 78,831 - -0.8 78,831 - -1.0 79,343 + LRK54_RS00345 0.49 -1.2 79,343 + LRK54_RS00345 0.49 +0.9 79,343 + LRK54_RS00345 0.49 +0.1 79,343 + LRK54_RS00345 0.49 -0.1 79,343 + LRK54_RS00345 0.49 -1.6 79,343 + LRK54_RS00345 0.49 -1.9 79,343 + LRK54_RS00345 0.49 -1.4 79,343 + LRK54_RS00345 0.49 -1.6 79,343 + LRK54_RS00345 0.49 -2.0 79,344 - LRK54_RS00345 0.49 -0.9 79,344 - LRK54_RS00345 0.49 -0.7 79,344 - LRK54_RS00345 0.49 -1.7 79,344 - LRK54_RS00345 0.49 -2.5 79,344 - LRK54_RS00345 0.49 -1.1 79,344 - LRK54_RS00345 0.49 -1.5 79,344 - LRK54_RS00345 0.49 -1.0 79,344 - LRK54_RS00345 0.49 +0.1
Or see this region's nucleotide sequence