Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2161

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2160 and Ga0059261_2161 are separated by 124 nucleotidesGa0059261_2161 and Ga0059261_2162 overlap by 4 nucleotidesGa0059261_2162 and Ga0059261_2163 are separated by 24 nucleotides Ga0059261_2160: Ga0059261_2160 - acetyl-CoA acetyltransferases, at 2,271,985 to 2,273,181 _2160 Ga0059261_2161: Ga0059261_2161 - hydroxymethylbilane synthase (EC 2.5.1.61), at 2,273,306 to 2,274,214 _2161 Ga0059261_2162: Ga0059261_2162 - Uroporphyrinogen-III synthase, at 2,274,211 to 2,274,879 _2162 Ga0059261_2163: Ga0059261_2163 - hypothetical protein, at 2,274,904 to 2,275,797 _2163 Position (kb) 2273 2274 2275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.414 kb on + strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strandat 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strandat 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.415 kb on - strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.416 kb on + strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strandat 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.417 kb on - strand, within Ga0059261_2160at 2272.456 kb on + strand, within Ga0059261_2160at 2272.456 kb on + strand, within Ga0059261_2160at 2272.457 kb on - strand, within Ga0059261_2160at 2272.457 kb on - strand, within Ga0059261_2160at 2272.457 kb on - strandat 2272.486 kb on + strand, within Ga0059261_2160at 2272.486 kb on + strand, within Ga0059261_2160at 2272.486 kb on + strand, within Ga0059261_2160at 2272.486 kb on + strand, within Ga0059261_2160at 2272.486 kb on + strand, within Ga0059261_2160at 2272.487 kb on - strandat 2272.487 kb on - strand, within Ga0059261_2160at 2272.487 kb on - strand, within Ga0059261_2160at 2272.487 kb on - strand, within Ga0059261_2160at 2272.487 kb on - strand, within Ga0059261_2160at 2272.487 kb on - strand, within Ga0059261_2160at 2272.651 kb on - strand, within Ga0059261_2160at 2272.823 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.825 kb on + strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.826 kb on - strand, within Ga0059261_2160at 2272.975 kb on + strand, within Ga0059261_2160at 2272.976 kb on - strand, within Ga0059261_2160at 2272.976 kb on - strand, within Ga0059261_2160at 2272.976 kb on - strand, within Ga0059261_2160at 2272.976 kb on - strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strandat 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.011 kb on + strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strand, within Ga0059261_2160at 2273.012 kb on - strandat 2273.012 kb on - strand, within Ga0059261_2160at 2273.013 kb on + strand, within Ga0059261_2160at 2273.013 kb on + strand, within Ga0059261_2160at 2273.013 kb on + strand, within Ga0059261_2160at 2273.014 kb on - strand, within Ga0059261_2160at 2273.014 kb on - strand, within Ga0059261_2160at 2273.014 kb on - strand, within Ga0059261_2160at 2273.014 kb on - strand, within Ga0059261_2160at 2273.136 kb on + strandat 2273.136 kb on + strandat 2273.136 kb on + strandat 2273.136 kb on + strandat 2273.137 kb on - strandat 2273.294 kb on + strandat 2273.294 kb on + strandat 2273.294 kb on + strandat 2273.294 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strandat 2274.894 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,272,414 + Ga0059261_2160 0.36 +0.1
2,272,414 + Ga0059261_2160 0.36 +0.2
2,272,414 + Ga0059261_2160 0.36 +0.9
2,272,414 + Ga0059261_2160 0.36 -0.4
2,272,414 + Ga0059261_2160 0.36 +0.4
2,272,414 + Ga0059261_2160 0.36 +0.3
2,272,414 + Ga0059261_2160 0.36 -0.5
2,272,414 + Ga0059261_2160 0.36 -0.4
2,272,414 + Ga0059261_2160 0.36 -0.2
2,272,414 + Ga0059261_2160 0.36 -0.2
2,272,414 + Ga0059261_2160 0.36 +0.1
2,272,414 + Ga0059261_2160 0.36 -0.4
2,272,414 + Ga0059261_2160 0.36 +0.6
2,272,414 + Ga0059261_2160 0.36 -0.5
2,272,414 + Ga0059261_2160 0.36 +2.1
2,272,414 + Ga0059261_2160 0.36 +0.0
2,272,414 + Ga0059261_2160 0.36 -0.2
2,272,414 + Ga0059261_2160 0.36 +0.6
2,272,415 - Ga0059261_2160 0.36 -0.7
2,272,415 - Ga0059261_2160 0.36 +0.4
2,272,415 - Ga0059261_2160 0.36 +0.8
2,272,415 - Ga0059261_2160 0.36 +1.6
2,272,415 - Ga0059261_2160 0.36 +0.9
2,272,415 - +0.2
2,272,415 - Ga0059261_2160 0.36 +0.0
2,272,415 - Ga0059261_2160 0.36 +0.2
2,272,415 - Ga0059261_2160 0.36 -0.2
2,272,415 - Ga0059261_2160 0.36 -0.6
2,272,415 - Ga0059261_2160 0.36 +1.3
2,272,415 - Ga0059261_2160 0.36 -0.3
2,272,415 - +0.8
2,272,415 - Ga0059261_2160 0.36 -0.8
2,272,415 - Ga0059261_2160 0.36 -0.5
2,272,415 - Ga0059261_2160 0.36 -0.5
2,272,415 - Ga0059261_2160 0.36 -1.0
2,272,415 - Ga0059261_2160 0.36 +0.4
2,272,415 - Ga0059261_2160 0.36 -0.3
2,272,415 - Ga0059261_2160 0.36 -0.4
2,272,415 - Ga0059261_2160 0.36 -0.1
2,272,415 - Ga0059261_2160 0.36 -0.2
2,272,415 - Ga0059261_2160 0.36 +2.2
2,272,415 - Ga0059261_2160 0.36 +0.0
2,272,416 + Ga0059261_2160 0.36 +0.1
2,272,416 + Ga0059261_2160 0.36 +0.3
2,272,416 + Ga0059261_2160 0.36 -1.0
2,272,416 + Ga0059261_2160 0.36 +0.7
2,272,416 + Ga0059261_2160 0.36 -0.3
2,272,416 + Ga0059261_2160 0.36 -0.9
2,272,416 + Ga0059261_2160 0.36 +0.2
2,272,416 + Ga0059261_2160 0.36 -1.2
2,272,416 + Ga0059261_2160 0.36 +0.7
2,272,416 + Ga0059261_2160 0.36 -0.1
2,272,416 + Ga0059261_2160 0.36 +0.6
2,272,416 + Ga0059261_2160 0.36 +0.2
2,272,416 + Ga0059261_2160 0.36 +0.0
2,272,416 + Ga0059261_2160 0.36 +0.3
2,272,416 + Ga0059261_2160 0.36 +0.5
2,272,416 + Ga0059261_2160 0.36 +0.5
2,272,416 + Ga0059261_2160 0.36 +0.6
2,272,416 + Ga0059261_2160 0.36 -1.2
2,272,416 + Ga0059261_2160 0.36 +0.2
2,272,416 + Ga0059261_2160 0.36 -0.4
2,272,416 + Ga0059261_2160 0.36 -0.4
2,272,416 + Ga0059261_2160 0.36 -0.8
2,272,417 - Ga0059261_2160 0.36 +0.0
2,272,417 - Ga0059261_2160 0.36 -0.1
2,272,417 - Ga0059261_2160 0.36 +0.9
2,272,417 - Ga0059261_2160 0.36 +0.6
2,272,417 - Ga0059261_2160 0.36 +0.1
2,272,417 - Ga0059261_2160 0.36 -1.1
2,272,417 - Ga0059261_2160 0.36 +0.1
2,272,417 - Ga0059261_2160 0.36 -0.4
2,272,417 - Ga0059261_2160 0.36 +0.6
2,272,417 - Ga0059261_2160 0.36 +0.5
2,272,417 - +1.4
2,272,417 - Ga0059261_2160 0.36 -0.1
2,272,417 - Ga0059261_2160 0.36 -0.3
2,272,417 - Ga0059261_2160 0.36 -0.5
2,272,417 - Ga0059261_2160 0.36 -0.3
2,272,417 - Ga0059261_2160 0.36 +2.8
2,272,417 - Ga0059261_2160 0.36 -0.9
2,272,417 - Ga0059261_2160 0.36 -0.1
2,272,417 - Ga0059261_2160 0.36 -0.2
2,272,456 + Ga0059261_2160 0.39 +0.8
2,272,456 + Ga0059261_2160 0.39 -0.6
2,272,457 - Ga0059261_2160 0.39 +0.3
2,272,457 - Ga0059261_2160 0.39 -1.2
2,272,457 - +0.6
2,272,486 + Ga0059261_2160 0.42 +0.6
2,272,486 + Ga0059261_2160 0.42 +0.7
2,272,486 + Ga0059261_2160 0.42 +0.2
2,272,486 + Ga0059261_2160 0.42 +0.3
2,272,486 + Ga0059261_2160 0.42 -0.6
2,272,487 - +1.8
2,272,487 - Ga0059261_2160 0.42 -0.2
2,272,487 - Ga0059261_2160 0.42 +0.4
2,272,487 - Ga0059261_2160 0.42 +0.1
2,272,487 - Ga0059261_2160 0.42 -0.2
2,272,487 - Ga0059261_2160 0.42 -0.2
2,272,651 - Ga0059261_2160 0.56 +0.1
2,272,823 + Ga0059261_2160 0.70 +0.5
2,272,825 + Ga0059261_2160 0.70 -0.2
2,272,825 + Ga0059261_2160 0.70 +0.9
2,272,825 + Ga0059261_2160 0.70 +0.5
2,272,825 + Ga0059261_2160 0.70 -0.1
2,272,825 + Ga0059261_2160 0.70 -0.5
2,272,825 + Ga0059261_2160 0.70 +0.1
2,272,825 + Ga0059261_2160 0.70 -0.1
2,272,825 + Ga0059261_2160 0.70 -0.2
2,272,825 + Ga0059261_2160 0.70 -1.0
2,272,826 - Ga0059261_2160 0.70 -0.3
2,272,826 - Ga0059261_2160 0.70 +0.1
2,272,826 - Ga0059261_2160 0.70 +1.1
2,272,826 - Ga0059261_2160 0.70 -1.5
2,272,826 - Ga0059261_2160 0.70 -0.3
2,272,826 - Ga0059261_2160 0.70 +0.3
2,272,826 - Ga0059261_2160 0.70 -0.5
2,272,826 - Ga0059261_2160 0.70 +1.8
2,272,826 - Ga0059261_2160 0.70 +0.2
2,272,826 - Ga0059261_2160 0.70 -0.1
2,272,826 - Ga0059261_2160 0.70 -0.2
2,272,975 + Ga0059261_2160 0.83 +0.4
2,272,976 - Ga0059261_2160 0.83 -0.3
2,272,976 - Ga0059261_2160 0.83 -0.1
2,272,976 - Ga0059261_2160 0.83 +0.1
2,272,976 - Ga0059261_2160 0.83 -1.4
2,273,011 + Ga0059261_2160 0.86 +0.8
2,273,011 + Ga0059261_2160 0.86 +0.3
2,273,011 + +0.0
2,273,011 + Ga0059261_2160 0.86 +0.2
2,273,011 + Ga0059261_2160 0.86 -0.1
2,273,011 + Ga0059261_2160 0.86 -0.1
2,273,011 + Ga0059261_2160 0.86 -0.6
2,273,011 + Ga0059261_2160 0.86 +0.0
2,273,011 + Ga0059261_2160 0.86 +0.3
2,273,011 + Ga0059261_2160 0.86 -0.2
2,273,011 + Ga0059261_2160 0.86 -0.6
2,273,011 + Ga0059261_2160 0.86 +0.1
2,273,011 + Ga0059261_2160 0.86 -0.4
2,273,012 - Ga0059261_2160 0.86 -0.3
2,273,012 - Ga0059261_2160 0.86 +0.6
2,273,012 - Ga0059261_2160 0.86 -0.5
2,273,012 - Ga0059261_2160 0.86 +0.8
2,273,012 - Ga0059261_2160 0.86 -0.2
2,273,012 - Ga0059261_2160 0.86 +1.6
2,273,012 - Ga0059261_2160 0.86 -0.2
2,273,012 - Ga0059261_2160 0.86 +0.2
2,273,012 - Ga0059261_2160 0.86 -1.0
2,273,012 - Ga0059261_2160 0.86 +1.0
2,273,012 - Ga0059261_2160 0.86 +0.8
2,273,012 - Ga0059261_2160 0.86 +0.4
2,273,012 - Ga0059261_2160 0.86 -0.2
2,273,012 - Ga0059261_2160 0.86 +0.9
2,273,012 - Ga0059261_2160 0.86 +0.9
2,273,012 - +0.5
2,273,012 - Ga0059261_2160 0.86 +0.1
2,273,013 + Ga0059261_2160 0.86 +0.1
2,273,013 + Ga0059261_2160 0.86 -0.1
2,273,013 + Ga0059261_2160 0.86 -0.1
2,273,014 - Ga0059261_2160 0.86 -0.7
2,273,014 - Ga0059261_2160 0.86 -0.5
2,273,014 - Ga0059261_2160 0.86 +0.4
2,273,014 - Ga0059261_2160 0.86 +0.0
2,273,136 + +0.2
2,273,136 + -1.2
2,273,136 + +0.3
2,273,136 + +0.1
2,273,137 - +0.7
2,273,294 + +0.1
2,273,294 + +0.2
2,273,294 + +0.3
2,273,294 + -0.1
2,274,894 + -0.8
2,274,894 + -1.2
2,274,894 + -3.5
2,274,894 + -3.5

Or see this region's nucleotide sequence