Strain Fitness in Rahnella sp. WP5 around EX31_RS23945

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23940 and EX31_RS23945 overlap by 4 nucleotidesEX31_RS23945 and EX31_RS23950 overlap by 4 nucleotides EX31_RS23940: EX31_RS23940 - ABC transporter permease, at 557,248 to 558,417 _RS23940 EX31_RS23945: EX31_RS23945 - ABC transporter ATP-binding protein, at 558,414 to 559,358 _RS23945 EX31_RS23950: EX31_RS23950 - ABC transporter permease, at 559,355 to 560,113 _RS23950 Position (kb) 558 559 560Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 557.758 kb on + strand, within EX31_RS23940at 557.875 kb on - strand, within EX31_RS23940at 557.913 kb on + strand, within EX31_RS23940at 557.913 kb on + strand, within EX31_RS23940at 557.913 kb on + strand, within EX31_RS23940at 558.055 kb on + strand, within EX31_RS23940at 558.055 kb on + strand, within EX31_RS23940at 558.218 kb on + strand, within EX31_RS23940at 558.589 kb on + strand, within EX31_RS23945at 558.589 kb on + strand, within EX31_RS23945at 558.590 kb on - strand, within EX31_RS23945at 558.590 kb on - strand, within EX31_RS23945at 558.880 kb on + strand, within EX31_RS23945at 558.880 kb on + strand, within EX31_RS23945at 558.880 kb on + strand, within EX31_RS23945at 558.881 kb on - strand, within EX31_RS23945at 558.881 kb on - strand, within EX31_RS23945at 558.881 kb on - strand, within EX31_RS23945at 558.934 kb on + strand, within EX31_RS23945at 558.960 kb on - strand, within EX31_RS23945at 558.982 kb on + strand, within EX31_RS23945at 559.033 kb on + strand, within EX31_RS23945at 559.135 kb on + strand, within EX31_RS23945at 559.478 kb on + strand, within EX31_RS23950at 559.479 kb on - strand, within EX31_RS23950at 559.711 kb on + strand, within EX31_RS23950at 559.871 kb on - strand, within EX31_RS23950at 559.897 kb on + strand, within EX31_RS23950at 559.942 kb on - strand, within EX31_RS23950at 559.942 kb on - strand, within EX31_RS23950at 559.942 kb on - strand, within EX31_RS23950at 559.942 kb on - strand, within EX31_RS23950at 559.960 kb on + strand, within EX31_RS23950at 559.961 kb on - strand, within EX31_RS23950at 559.961 kb on - strand, within EX31_RS23950at 559.982 kb on - strand, within EX31_RS23950at 559.985 kb on - strand, within EX31_RS23950at 559.992 kb on - strand, within EX31_RS23950at 559.992 kb on - strand, within EX31_RS23950at 559.992 kb on - strand, within EX31_RS23950at 559.992 kb on - strand, within EX31_RS23950at 559.996 kb on - strand, within EX31_RS23950at 559.996 kb on - strand, within EX31_RS23950at 559.996 kb on - strand, within EX31_RS23950at 559.996 kb on - strand, within EX31_RS23950at 559.996 kb on - strand, within EX31_RS23950at 559.996 kb on - strand, within EX31_RS23950at 560.038 kb on - strandat 560.038 kb on - strandat 560.041 kb on + strandat 560.042 kb on - strandat 560.042 kb on - strandat 560.042 kb on - strandat 560.042 kb on - strandat 560.042 kb on - strandat 560.042 kb on - strandat 560.042 kb on - strandat 560.042 kb on - strandat 560.071 kb on - strandat 560.071 kb on - strandat 560.251 kb on + strandat 560.252 kb on - strandat 560.256 kb on - strandat 560.285 kb on + strandat 560.285 kb on + strandat 560.286 kb on - strandat 560.286 kb on - strandat 560.286 kb on - strandat 560.286 kb on - strandat 560.310 kb on + strandat 560.311 kb on - strandat 560.313 kb on - strandat 560.313 kb on - strandat 560.341 kb on + strandat 560.341 kb on + strandat 560.341 kb on + strandat 560.342 kb on - strandat 560.342 kb on - strandat 560.342 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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557,758 + EX31_RS23940 0.44 -1.3
557,875 - EX31_RS23940 0.54 +0.3
557,913 + EX31_RS23940 0.57 -0.6
557,913 + EX31_RS23940 0.57 -2.5
557,913 + EX31_RS23940 0.57 +0.7
558,055 + EX31_RS23940 0.69 +0.3
558,055 + EX31_RS23940 0.69 -1.5
558,218 + EX31_RS23940 0.83 -1.2
558,589 + EX31_RS23945 0.19 -3.2
558,589 + EX31_RS23945 0.19 +1.2
558,590 - EX31_RS23945 0.19 -0.7
558,590 - EX31_RS23945 0.19 -1.8
558,880 + EX31_RS23945 0.49 -1.7
558,880 + EX31_RS23945 0.49 -1.6
558,880 + EX31_RS23945 0.49 -1.7
558,881 - EX31_RS23945 0.49 +1.1
558,881 - EX31_RS23945 0.49 +0.7
558,881 - EX31_RS23945 0.49 -2.3
558,934 + EX31_RS23945 0.55 +0.7
558,960 - EX31_RS23945 0.58 +0.7
558,982 + EX31_RS23945 0.60 -0.9
559,033 + EX31_RS23945 0.66 -1.6
559,135 + EX31_RS23945 0.76 +0.7
559,478 + EX31_RS23950 0.16 +1.1
559,479 - EX31_RS23950 0.16 -0.9
559,711 + EX31_RS23950 0.47 -0.0
559,871 - EX31_RS23950 0.68 +0.1
559,897 + EX31_RS23950 0.71 +2.3
559,942 - EX31_RS23950 0.77 +0.2
559,942 - EX31_RS23950 0.77 +0.7
559,942 - EX31_RS23950 0.77 +1.6
559,942 - EX31_RS23950 0.77 +0.7
559,960 + EX31_RS23950 0.80 +0.7
559,961 - EX31_RS23950 0.80 +0.4
559,961 - EX31_RS23950 0.80 -1.0
559,982 - EX31_RS23950 0.83 -0.2
559,985 - EX31_RS23950 0.83 +1.9
559,992 - EX31_RS23950 0.84 -1.9
559,992 - EX31_RS23950 0.84 -0.9
559,992 - EX31_RS23950 0.84 -1.1
559,992 - EX31_RS23950 0.84 +0.2
559,996 - EX31_RS23950 0.84 -0.1
559,996 - EX31_RS23950 0.84 +1.5
559,996 - EX31_RS23950 0.84 -1.2
559,996 - EX31_RS23950 0.84 -0.9
559,996 - EX31_RS23950 0.84 +2.1
559,996 - EX31_RS23950 0.84 -0.9
560,038 - -0.7
560,038 - +1.3
560,041 + +0.9
560,042 - -0.3
560,042 - -0.3
560,042 - -0.4
560,042 - +0.4
560,042 - +1.1
560,042 - +1.5
560,042 - +0.5
560,042 - +0.7
560,071 - +0.1
560,071 - +2.3
560,251 + +0.7
560,252 - +0.7
560,256 - -0.6
560,285 + -1.4
560,285 + +0.3
560,286 - -1.1
560,286 - +2.7
560,286 - -1.0
560,286 - -0.6
560,310 + -2.1
560,311 - +1.5
560,313 - +0.0
560,313 - -1.3
560,341 + +0.2
560,341 + -1.0
560,341 + +0.7
560,342 - -0.5
560,342 - +0.5
560,342 - -0.9

Or see this region's nucleotide sequence