Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21800 and EX31_RS21805 are separated by 30 nucleotides EX31_RS21805 and EX31_RS21810 overlap by 1 nucleotides EX31_RS21810 and EX31_RS21815 are separated by 48 nucleotides EX31_RS21815 and EX31_RS21820 are separated by 60 nucleotides
EX31_RS21800: EX31_RS21800 - RNA polymerase sigma factor RpoE, at 103,761 to 104,336
_RS21800
EX31_RS21805: EX31_RS21805 - anti-sigma-E factor RseA, at 104,367 to 105,014
_RS21805
EX31_RS21810: EX31_RS21810 - sigma-E factor regulatory protein RseB, at 105,014 to 105,964
_RS21810
EX31_RS21815: EX31_RS21815 - SoxR-reducing system protein RseC, at 106,013 to 106,489
_RS21815
EX31_RS21820: EX31_RS21820 - hypothetical protein, at 106,550 to 107,368
_RS21820
Position (kb) 105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 104.358 kb on + strand at 104.358 kb on + strand at 104.362 kb on + strand at 104.444 kb on + strand, within EX31_RS21805 at 104.494 kb on + strand, within EX31_RS21805 at 104.494 kb on + strand, within EX31_RS21805 at 104.695 kb on + strand, within EX31_RS21805 at 104.695 kb on + strand, within EX31_RS21805 at 104.695 kb on + strand, within EX31_RS21805 at 104.727 kb on + strand, within EX31_RS21805 at 104.729 kb on + strand, within EX31_RS21805 at 104.777 kb on + strand, within EX31_RS21805 at 104.786 kb on + strand, within EX31_RS21805 at 104.873 kb on + strand, within EX31_RS21805 at 104.873 kb on + strand, within EX31_RS21805 at 104.873 kb on + strand, within EX31_RS21805 at 104.873 kb on + strand, within EX31_RS21805 at 104.951 kb on + strand at 105.061 kb on + strand at 105.061 kb on + strand at 105.102 kb on + strand at 105.140 kb on + strand, within EX31_RS21810 at 105.141 kb on - strand, within EX31_RS21810 at 105.163 kb on + strand, within EX31_RS21810 at 105.287 kb on + strand, within EX31_RS21810 at 105.288 kb on - strand, within EX31_RS21810 at 105.303 kb on + strand, within EX31_RS21810 at 105.313 kb on + strand, within EX31_RS21810 at 105.314 kb on - strand, within EX31_RS21810 at 105.331 kb on + strand, within EX31_RS21810 at 105.331 kb on + strand, within EX31_RS21810 at 105.386 kb on + strand, within EX31_RS21810 at 105.386 kb on + strand, within EX31_RS21810 at 105.387 kb on - strand, within EX31_RS21810 at 105.405 kb on + strand, within EX31_RS21810 at 105.453 kb on + strand, within EX31_RS21810 at 105.479 kb on + strand, within EX31_RS21810 at 105.479 kb on + strand, within EX31_RS21810 at 105.480 kb on - strand, within EX31_RS21810 at 105.480 kb on - strand, within EX31_RS21810 at 105.486 kb on + strand, within EX31_RS21810 at 105.486 kb on + strand, within EX31_RS21810 at 105.649 kb on - strand, within EX31_RS21810 at 105.684 kb on + strand, within EX31_RS21810 at 105.684 kb on + strand, within EX31_RS21810 at 105.684 kb on + strand, within EX31_RS21810 at 105.684 kb on + strand, within EX31_RS21810 at 105.742 kb on + strand, within EX31_RS21810 at 105.770 kb on + strand, within EX31_RS21810 at 105.770 kb on + strand, within EX31_RS21810 at 105.770 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.817 kb on + strand, within EX31_RS21810 at 105.818 kb on - strand, within EX31_RS21810 at 105.873 kb on + strand at 105.969 kb on + strand at 105.970 kb on - strand at 105.993 kb on + strand at 105.999 kb on + strand at 105.999 kb on + strand at 105.999 kb on + strand at 105.999 kb on + strand at 105.999 kb on + strand at 105.999 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.010 kb on + strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.011 kb on - strand at 106.054 kb on + strand at 106.093 kb on + strand, within EX31_RS21815 at 106.093 kb on + strand, within EX31_RS21815 at 106.140 kb on + strand, within EX31_RS21815 at 106.159 kb on + strand, within EX31_RS21815 at 106.159 kb on + strand, within EX31_RS21815 at 106.159 kb on + strand, within EX31_RS21815 at 106.159 kb on + strand, within EX31_RS21815 at 106.159 kb on + strand, within EX31_RS21815 at 106.256 kb on + strand, within EX31_RS21815 at 106.256 kb on + strand, within EX31_RS21815 at 106.256 kb on + strand, within EX31_RS21815 at 106.256 kb on + strand, within EX31_RS21815 at 106.256 kb on + strand, within EX31_RS21815 at 106.256 kb on + strand, within EX31_RS21815 at 106.257 kb on - strand, within EX31_RS21815 at 106.258 kb on + strand, within EX31_RS21815 at 106.258 kb on + strand, within EX31_RS21815 at 106.258 kb on + strand, within EX31_RS21815 at 106.258 kb on + strand, within EX31_RS21815 at 106.258 kb on + strand, within EX31_RS21815 at 106.259 kb on - strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.323 kb on + strand, within EX31_RS21815 at 106.324 kb on - strand, within EX31_RS21815 at 106.324 kb on - strand, within EX31_RS21815 at 106.324 kb on - strand, within EX31_RS21815 at 106.359 kb on + strand, within EX31_RS21815 at 106.359 kb on + strand, within EX31_RS21815 at 106.375 kb on + strand, within EX31_RS21815 at 106.487 kb on + strand at 106.502 kb on + strand at 106.502 kb on + strand at 106.502 kb on + strand at 106.503 kb on - strand at 106.503 kb on - strand at 106.567 kb on + strand at 106.582 kb on + strand at 106.582 kb on + strand at 106.582 kb on + strand at 106.582 kb on + strand at 106.582 kb on + strand at 106.582 kb on + strand at 106.583 kb on - strand at 106.583 kb on - strand at 106.583 kb on - strand at 106.583 kb on - strand at 106.583 kb on - strand at 106.583 kb on - strand at 106.583 kb on - strand at 106.583 kb on - strand at 106.583 kb on - strand at 106.627 kb on + strand at 106.627 kb on + strand at 106.627 kb on + strand at 106.627 kb on + strand at 106.627 kb on + strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.628 kb on - strand at 106.629 kb on + strand at 106.629 kb on + strand at 106.629 kb on + strand at 106.629 kb on + strand at 106.629 kb on + strand at 106.630 kb on - strand at 106.630 kb on - strand at 106.630 kb on - strand at 106.630 kb on - strand at 106.634 kb on + strand, within EX31_RS21820 at 106.635 kb on - strand, within EX31_RS21820 at 106.673 kb on + strand, within EX31_RS21820 at 106.673 kb on + strand, within EX31_RS21820 at 106.674 kb on - strand, within EX31_RS21820 at 106.674 kb on - strand, within EX31_RS21820 at 106.674 kb on - strand, within EX31_RS21820 at 106.674 kb on - strand, within EX31_RS21820 at 106.674 kb on - strand, within EX31_RS21820 at 106.674 kb on - strand, within EX31_RS21820 at 106.674 kb on - strand, within EX31_RS21820 at 106.674 kb on - strand, within EX31_RS21820 at 106.728 kb on - strand, within EX31_RS21820 at 106.842 kb on + strand, within EX31_RS21820 at 106.842 kb on + strand, within EX31_RS21820 at 106.842 kb on + strand, within EX31_RS21820 at 106.843 kb on - strand, within EX31_RS21820 at 106.843 kb on - strand, within EX31_RS21820 at 106.846 kb on + strand, within EX31_RS21820 at 106.847 kb on - strand, within EX31_RS21820 at 106.900 kb on - strand, within EX31_RS21820 at 106.900 kb on - strand, within EX31_RS21820 at 106.932 kb on - strand, within EX31_RS21820 at 106.961 kb on - strand, within EX31_RS21820 at 106.963 kb on + strand, within EX31_RS21820 at 106.963 kb on + strand, within EX31_RS21820 at 106.963 kb on + strand, within EX31_RS21820 at 106.964 kb on - strand, within EX31_RS21820 at 106.964 kb on - strand, within EX31_RS21820 at 106.964 kb on - strand, within EX31_RS21820 at 106.964 kb on - strand, within EX31_RS21820 at 106.964 kb on - strand, within EX31_RS21820
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 104,358 + -2.5 104,358 + -2.2 104,362 + -2.2 104,444 + EX31_RS21805 0.12 +0.8 104,494 + EX31_RS21805 0.20 -1.2 104,494 + EX31_RS21805 0.20 -1.5 104,695 + EX31_RS21805 0.51 -2.9 104,695 + EX31_RS21805 0.51 -2.9 104,695 + EX31_RS21805 0.51 -1.8 104,727 + EX31_RS21805 0.56 -0.2 104,729 + EX31_RS21805 0.56 -1.8 104,777 + EX31_RS21805 0.63 -2.4 104,786 + EX31_RS21805 0.65 -1.5 104,873 + EX31_RS21805 0.78 +2.1 104,873 + EX31_RS21805 0.78 +0.6 104,873 + EX31_RS21805 0.78 +0.9 104,873 + EX31_RS21805 0.78 +1.8 104,951 + +0.5 105,061 + +0.5 105,061 + +0.2 105,102 + -1.8 105,140 + EX31_RS21810 0.13 -0.7 105,141 - EX31_RS21810 0.13 +0.6 105,163 + EX31_RS21810 0.16 -0.0 105,287 + EX31_RS21810 0.29 +2.8 105,288 - EX31_RS21810 0.29 -1.0 105,303 + EX31_RS21810 0.30 -1.2 105,313 + EX31_RS21810 0.31 +0.3 105,314 - EX31_RS21810 0.32 +0.2 105,331 + EX31_RS21810 0.33 +0.5 105,331 + EX31_RS21810 0.33 +1.1 105,386 + EX31_RS21810 0.39 +0.4 105,386 + EX31_RS21810 0.39 -0.0 105,387 - EX31_RS21810 0.39 +0.2 105,405 + EX31_RS21810 0.41 +0.7 105,453 + EX31_RS21810 0.46 -2.4 105,479 + EX31_RS21810 0.49 +1.9 105,479 + EX31_RS21810 0.49 +0.7 105,480 - EX31_RS21810 0.49 +0.6 105,480 - EX31_RS21810 0.49 +0.8 105,486 + EX31_RS21810 0.50 -0.2 105,486 + EX31_RS21810 0.50 +1.6 105,649 - EX31_RS21810 0.67 +1.8 105,684 + EX31_RS21810 0.70 -0.4 105,684 + EX31_RS21810 0.70 +1.4 105,684 + EX31_RS21810 0.70 +0.2 105,684 + EX31_RS21810 0.70 +0.2 105,742 + EX31_RS21810 0.77 +1.3 105,770 + EX31_RS21810 0.79 +1.0 105,770 + EX31_RS21810 0.79 +0.6 105,770 + EX31_RS21810 0.79 -1.4 105,817 + EX31_RS21810 0.84 +0.1 105,817 + EX31_RS21810 0.84 +0.9 105,817 + EX31_RS21810 0.84 +1.9 105,817 + EX31_RS21810 0.84 -0.4 105,817 + EX31_RS21810 0.84 -1.0 105,817 + EX31_RS21810 0.84 -0.7 105,817 + EX31_RS21810 0.84 +0.0 105,817 + EX31_RS21810 0.84 -0.4 105,817 + EX31_RS21810 0.84 -0.6 105,818 - EX31_RS21810 0.85 -1.0 105,873 + +0.1 105,969 + -2.4 105,970 - -0.0 105,993 + +0.1 105,999 + +0.8 105,999 + -1.5 105,999 + -0.1 105,999 + -0.8 105,999 + -1.5 105,999 + +0.4 106,010 + +0.8 106,010 + -2.2 106,010 + -1.2 106,010 + -0.9 106,010 + +0.6 106,010 + -0.6 106,010 + +1.5 106,010 + +0.4 106,010 + +0.3 106,010 + +1.0 106,010 + -0.8 106,011 - -0.2 106,011 - +0.8 106,011 - +0.3 106,011 - -1.0 106,011 - +2.8 106,011 - -0.8 106,011 - +0.8 106,011 - +0.8 106,011 - +0.8 106,011 - -0.7 106,011 - -1.0 106,054 + -0.5 106,093 + EX31_RS21815 0.17 -1.3 106,093 + EX31_RS21815 0.17 +0.4 106,140 + EX31_RS21815 0.27 +0.1 106,159 + EX31_RS21815 0.31 -0.8 106,159 + EX31_RS21815 0.31 -0.2 106,159 + EX31_RS21815 0.31 +0.7 106,159 + EX31_RS21815 0.31 +1.2 106,159 + EX31_RS21815 0.31 +0.5 106,256 + EX31_RS21815 0.51 +0.3 106,256 + EX31_RS21815 0.51 +1.3 106,256 + EX31_RS21815 0.51 +0.2 106,256 + EX31_RS21815 0.51 -2.2 106,256 + EX31_RS21815 0.51 -0.6 106,256 + EX31_RS21815 0.51 -0.2 106,257 - EX31_RS21815 0.51 -0.7 106,258 + EX31_RS21815 0.51 -0.2 106,258 + EX31_RS21815 0.51 +0.9 106,258 + EX31_RS21815 0.51 -1.4 106,258 + EX31_RS21815 0.51 +1.8 106,258 + EX31_RS21815 0.51 +0.9 106,259 - EX31_RS21815 0.52 -1.8 106,323 + EX31_RS21815 0.65 +0.5 106,323 + EX31_RS21815 0.65 -0.4 106,323 + EX31_RS21815 0.65 -0.2 106,323 + EX31_RS21815 0.65 +0.4 106,323 + EX31_RS21815 0.65 +1.2 106,323 + EX31_RS21815 0.65 +0.8 106,323 + EX31_RS21815 0.65 -0.8 106,323 + EX31_RS21815 0.65 -2.6 106,323 + EX31_RS21815 0.65 +1.0 106,323 + EX31_RS21815 0.65 +0.6 106,323 + EX31_RS21815 0.65 -0.4 106,323 + EX31_RS21815 0.65 -2.8 106,323 + EX31_RS21815 0.65 -0.6 106,323 + EX31_RS21815 0.65 +0.8 106,323 + EX31_RS21815 0.65 -2.0 106,323 + EX31_RS21815 0.65 -0.2 106,323 + EX31_RS21815 0.65 +0.1 106,323 + EX31_RS21815 0.65 +0.8 106,324 - EX31_RS21815 0.65 +1.4 106,324 - EX31_RS21815 0.65 +1.5 106,324 - EX31_RS21815 0.65 -0.2 106,359 + EX31_RS21815 0.73 -0.1 106,359 + EX31_RS21815 0.73 +1.2 106,375 + EX31_RS21815 0.76 +1.0 106,487 + +0.9 106,502 + +0.8 106,502 + +0.1 106,502 + -0.8 106,503 - +1.8 106,503 - +0.8 106,567 + -0.2 106,582 + -1.0 106,582 + +0.8 106,582 + +1.8 106,582 + +0.8 106,582 + +0.5 106,582 + -0.8 106,583 - +0.9 106,583 - -1.5 106,583 - -2.4 106,583 - +2.2 106,583 - -0.2 106,583 - +0.0 106,583 - +0.8 106,583 - +2.8 106,583 - -0.1 106,627 + -0.2 106,627 + +0.6 106,627 + +0.4 106,627 + -1.1 106,627 + -2.5 106,628 - -0.4 106,628 - +1.1 106,628 - -0.1 106,628 - +0.5 106,628 - -0.5 106,628 - -1.7 106,628 - -0.4 106,628 - -0.1 106,628 - +0.2 106,628 - +0.2 106,629 + +0.8 106,629 + +2.8 106,629 + +0.2 106,629 + +0.8 106,629 + +0.8 106,630 - +1.8 106,630 - -0.4 106,630 - -1.3 106,630 - -0.7 106,634 + EX31_RS21820 0.10 +0.8 106,635 - EX31_RS21820 0.10 +0.6 106,673 + EX31_RS21820 0.15 -2.2 106,673 + EX31_RS21820 0.15 +1.2 106,674 - EX31_RS21820 0.15 -1.5 106,674 - EX31_RS21820 0.15 +0.4 106,674 - EX31_RS21820 0.15 +0.8 106,674 - EX31_RS21820 0.15 +2.0 106,674 - EX31_RS21820 0.15 -2.0 106,674 - EX31_RS21820 0.15 +0.2 106,674 - EX31_RS21820 0.15 -0.1 106,674 - EX31_RS21820 0.15 -0.2 106,728 - EX31_RS21820 0.22 +1.0 106,842 + EX31_RS21820 0.36 +3.0 106,842 + EX31_RS21820 0.36 -1.2 106,842 + EX31_RS21820 0.36 +1.8 106,843 - EX31_RS21820 0.36 +0.8 106,843 - EX31_RS21820 0.36 +1.6 106,846 + EX31_RS21820 0.36 -0.2 106,847 - EX31_RS21820 0.36 +3.1 106,900 - EX31_RS21820 0.43 +2.7 106,900 - EX31_RS21820 0.43 -1.2 106,932 - EX31_RS21820 0.47 -0.8 106,961 - EX31_RS21820 0.50 +0.2 106,963 + EX31_RS21820 0.50 -0.2 106,963 + EX31_RS21820 0.50 +2.1 106,963 + EX31_RS21820 0.50 +0.5 106,964 - EX31_RS21820 0.51 +0.8 106,964 - EX31_RS21820 0.51 -1.0 106,964 - EX31_RS21820 0.51 +0.3 106,964 - EX31_RS21820 0.51 -0.4 106,964 - EX31_RS21820 0.51 +0.8
Or see this region's nucleotide sequence