Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17650 and EX31_RS17655 are separated by 324 nucleotides EX31_RS17655 and EX31_RS17660 are separated by 129 nucleotides EX31_RS17660 and EX31_RS17665 are separated by 10 nucleotides
EX31_RS17650: EX31_RS17650 - LysR family transcriptional regulator, at 80,657 to 81,553
_RS17650
EX31_RS17655: EX31_RS17655 - hypothetical protein, at 81,878 to 82,225
_RS17655
EX31_RS17660: EX31_RS17660 - alpha/beta hydrolase, at 82,355 to 83,383
_RS17660
EX31_RS17665: EX31_RS17665 - MFS transporter, at 83,394 to 84,590
_RS17665
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 81.367 kb on - strand, within EX31_RS17650 at 81.367 kb on - strand, within EX31_RS17650 at 81.456 kb on - strand, within EX31_RS17650 at 81.473 kb on - strand at 81.504 kb on + strand at 81.505 kb on - strand at 81.549 kb on + strand at 81.549 kb on + strand at 81.549 kb on + strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.550 kb on - strand at 81.571 kb on + strand at 81.876 kb on + strand at 81.876 kb on + strand at 81.879 kb on + strand at 81.880 kb on - strand at 81.902 kb on + strand at 81.907 kb on + strand at 81.908 kb on - strand at 81.945 kb on - strand, within EX31_RS17655 at 81.945 kb on - strand, within EX31_RS17655 at 81.966 kb on + strand, within EX31_RS17655 at 81.994 kb on - strand, within EX31_RS17655 at 81.994 kb on - strand, within EX31_RS17655 at 81.998 kb on + strand, within EX31_RS17655 at 81.999 kb on - strand, within EX31_RS17655 at 81.999 kb on - strand, within EX31_RS17655 at 82.020 kb on + strand, within EX31_RS17655 at 82.021 kb on - strand, within EX31_RS17655 at 82.078 kb on + strand, within EX31_RS17655 at 82.079 kb on - strand, within EX31_RS17655 at 82.079 kb on - strand, within EX31_RS17655 at 82.113 kb on - strand, within EX31_RS17655 at 82.113 kb on - strand, within EX31_RS17655 at 82.144 kb on + strand, within EX31_RS17655 at 82.145 kb on - strand, within EX31_RS17655 at 82.145 kb on - strand, within EX31_RS17655 at 82.145 kb on - strand, within EX31_RS17655 at 82.147 kb on + strand, within EX31_RS17655 at 82.147 kb on + strand, within EX31_RS17655 at 82.281 kb on - strand at 82.372 kb on + strand at 82.419 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.452 kb on + strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.453 kb on - strand at 82.482 kb on + strand, within EX31_RS17660 at 82.482 kb on + strand, within EX31_RS17660 at 82.648 kb on + strand, within EX31_RS17660 at 82.648 kb on + strand, within EX31_RS17660 at 82.648 kb on + strand, within EX31_RS17660 at 82.738 kb on + strand, within EX31_RS17660 at 82.740 kb on + strand, within EX31_RS17660 at 82.740 kb on + strand, within EX31_RS17660 at 82.740 kb on + strand, within EX31_RS17660 at 82.741 kb on - strand, within EX31_RS17660 at 82.741 kb on - strand, within EX31_RS17660 at 82.741 kb on - strand, within EX31_RS17660 at 82.783 kb on + strand, within EX31_RS17660 at 82.784 kb on - strand, within EX31_RS17660 at 82.792 kb on + strand, within EX31_RS17660 at 82.793 kb on - strand, within EX31_RS17660 at 82.863 kb on + strand, within EX31_RS17660 at 82.864 kb on - strand, within EX31_RS17660 at 82.864 kb on - strand, within EX31_RS17660 at 82.864 kb on - strand, within EX31_RS17660 at 82.864 kb on - strand, within EX31_RS17660 at 82.975 kb on - strand, within EX31_RS17660 at 82.975 kb on - strand, within EX31_RS17660 at 82.975 kb on - strand, within EX31_RS17660 at 82.975 kb on - strand, within EX31_RS17660 at 82.975 kb on - strand, within EX31_RS17660 at 82.992 kb on + strand, within EX31_RS17660 at 82.992 kb on + strand, within EX31_RS17660 at 83.009 kb on - strand, within EX31_RS17660 at 83.129 kb on + strand, within EX31_RS17660 at 83.129 kb on + strand, within EX31_RS17660 at 83.130 kb on - strand, within EX31_RS17660 at 83.130 kb on - strand, within EX31_RS17660 at 83.130 kb on - strand, within EX31_RS17660 at 83.217 kb on - strand, within EX31_RS17660 at 83.248 kb on - strand, within EX31_RS17660 at 83.284 kb on + strand at 83.375 kb on + strand at 83.375 kb on + strand at 83.375 kb on + strand at 83.375 kb on + strand at 83.375 kb on + strand at 83.376 kb on - strand at 83.376 kb on - strand at 83.376 kb on - strand at 83.376 kb on - strand at 83.376 kb on - strand at 83.412 kb on - strand at 83.417 kb on + strand at 83.417 kb on + strand at 83.418 kb on - strand at 83.418 kb on - strand at 83.495 kb on + strand at 83.495 kb on + strand at 83.561 kb on + strand, within EX31_RS17665 at 83.561 kb on + strand, within EX31_RS17665 at 83.561 kb on + strand, within EX31_RS17665 at 83.561 kb on + strand, within EX31_RS17665 at 83.679 kb on + strand, within EX31_RS17665 at 83.679 kb on + strand, within EX31_RS17665 at 83.680 kb on - strand, within EX31_RS17665 at 83.680 kb on - strand, within EX31_RS17665 at 83.680 kb on - strand, within EX31_RS17665 at 83.680 kb on - strand, within EX31_RS17665 at 83.741 kb on + strand, within EX31_RS17665 at 83.843 kb on + strand, within EX31_RS17665 at 83.843 kb on + strand, within EX31_RS17665 at 83.843 kb on + strand, within EX31_RS17665 at 83.844 kb on - strand, within EX31_RS17665 at 83.844 kb on - strand, within EX31_RS17665 at 83.847 kb on + strand, within EX31_RS17665 at 83.848 kb on - strand, within EX31_RS17665 at 83.882 kb on - strand, within EX31_RS17665 at 83.889 kb on + strand, within EX31_RS17665 at 84.030 kb on + strand, within EX31_RS17665 at 84.031 kb on - strand, within EX31_RS17665 at 84.031 kb on - strand, within EX31_RS17665 at 84.031 kb on - strand, within EX31_RS17665 at 84.031 kb on - strand, within EX31_RS17665 at 84.031 kb on - strand, within EX31_RS17665 at 84.031 kb on - strand, within EX31_RS17665 at 84.032 kb on + strand, within EX31_RS17665 at 84.032 kb on + strand, within EX31_RS17665 at 84.033 kb on - strand, within EX31_RS17665 at 84.033 kb on - strand, within EX31_RS17665 at 84.033 kb on - strand, within EX31_RS17665 at 84.120 kb on + strand, within EX31_RS17665 at 84.120 kb on + strand, within EX31_RS17665 at 84.121 kb on - strand, within EX31_RS17665 at 84.265 kb on + strand, within EX31_RS17665 at 84.265 kb on + strand, within EX31_RS17665 at 84.266 kb on - strand, within EX31_RS17665 at 84.266 kb on - strand, within EX31_RS17665 at 84.340 kb on - strand, within EX31_RS17665 at 84.340 kb on - strand, within EX31_RS17665
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 81,367 - EX31_RS17650 0.79 +0.4 81,367 - EX31_RS17650 0.79 -0.9 81,456 - EX31_RS17650 0.89 +0.4 81,473 - +1.2 81,504 + -0.7 81,505 - +0.8 81,549 + -0.5 81,549 + +1.3 81,549 + -0.0 81,550 - +0.7 81,550 - +0.1 81,550 - -0.9 81,550 - +1.5 81,550 - +0.9 81,550 - +1.3 81,571 + +0.7 81,876 + +1.4 81,876 + -0.6 81,879 + -1.9 81,880 - -1.9 81,902 + +1.7 81,907 + -0.9 81,908 - -2.1 81,945 - EX31_RS17655 0.19 -0.3 81,945 - EX31_RS17655 0.19 +2.3 81,966 + EX31_RS17655 0.25 -0.3 81,994 - EX31_RS17655 0.33 +0.7 81,994 - EX31_RS17655 0.33 -0.1 81,998 + EX31_RS17655 0.34 -0.3 81,999 - EX31_RS17655 0.35 -0.6 81,999 - EX31_RS17655 0.35 -0.6 82,020 + EX31_RS17655 0.41 +2.7 82,021 - EX31_RS17655 0.41 -1.3 82,078 + EX31_RS17655 0.57 +0.7 82,079 - EX31_RS17655 0.58 -2.9 82,079 - EX31_RS17655 0.58 +0.2 82,113 - EX31_RS17655 0.68 +0.1 82,113 - EX31_RS17655 0.68 -1.3 82,144 + EX31_RS17655 0.76 -1.2 82,145 - EX31_RS17655 0.77 -2.0 82,145 - EX31_RS17655 0.77 +0.3 82,145 - EX31_RS17655 0.77 +0.7 82,147 + EX31_RS17655 0.77 -1.3 82,147 + EX31_RS17655 0.77 -0.3 82,281 - +1.6 82,372 + +0.7 82,419 + -0.0 82,452 + -0.9 82,452 + -0.0 82,452 + -1.4 82,452 + -0.9 82,452 + -0.3 82,452 + -0.9 82,453 - +0.6 82,453 - +1.7 82,453 - -0.3 82,453 - +0.8 82,453 - +2.7 82,453 - +0.3 82,453 - -1.9 82,453 - +2.3 82,453 - -0.3 82,453 - -1.6 82,453 - -1.9 82,482 + EX31_RS17660 0.12 +0.7 82,482 + EX31_RS17660 0.12 -0.3 82,648 + EX31_RS17660 0.28 -2.3 82,648 + EX31_RS17660 0.28 -2.5 82,648 + EX31_RS17660 0.28 +1.3 82,738 + EX31_RS17660 0.37 +0.9 82,740 + EX31_RS17660 0.37 +1.4 82,740 + EX31_RS17660 0.37 -1.6 82,740 + EX31_RS17660 0.37 +1.3 82,741 - EX31_RS17660 0.38 -0.3 82,741 - EX31_RS17660 0.38 +0.3 82,741 - EX31_RS17660 0.38 -0.5 82,783 + EX31_RS17660 0.42 -1.3 82,784 - EX31_RS17660 0.42 +3.3 82,792 + EX31_RS17660 0.42 +2.7 82,793 - EX31_RS17660 0.43 +2.5 82,863 + EX31_RS17660 0.49 +1.2 82,864 - EX31_RS17660 0.49 -0.6 82,864 - EX31_RS17660 0.49 -2.6 82,864 - EX31_RS17660 0.49 +0.7 82,864 - EX31_RS17660 0.49 -1.6 82,975 - EX31_RS17660 0.60 +1.5 82,975 - EX31_RS17660 0.60 -0.3 82,975 - EX31_RS17660 0.60 +0.4 82,975 - EX31_RS17660 0.60 -0.3 82,975 - EX31_RS17660 0.60 -1.3 82,992 + EX31_RS17660 0.62 -0.6 82,992 + EX31_RS17660 0.62 +0.3 83,009 - EX31_RS17660 0.64 +1.4 83,129 + EX31_RS17660 0.75 +2.0 83,129 + EX31_RS17660 0.75 -1.3 83,130 - EX31_RS17660 0.75 -2.1 83,130 - EX31_RS17660 0.75 +0.7 83,130 - EX31_RS17660 0.75 +0.4 83,217 - EX31_RS17660 0.84 -1.8 83,248 - EX31_RS17660 0.87 +1.7 83,284 + +1.7 83,375 + -1.6 83,375 + +0.7 83,375 + -0.9 83,375 + +1.5 83,375 + +0.3 83,376 - -0.6 83,376 - -2.1 83,376 - -0.0 83,376 - +0.7 83,376 - +1.8 83,412 - +1.1 83,417 + +1.0 83,417 + +1.3 83,418 - -0.5 83,418 - +0.7 83,495 + +1.7 83,495 + +1.7 83,561 + EX31_RS17665 0.14 -0.9 83,561 + EX31_RS17665 0.14 +0.9 83,561 + EX31_RS17665 0.14 -1.6 83,561 + EX31_RS17665 0.14 +0.0 83,679 + EX31_RS17665 0.24 -0.3 83,679 + EX31_RS17665 0.24 +0.7 83,680 - EX31_RS17665 0.24 -0.3 83,680 - EX31_RS17665 0.24 -1.3 83,680 - EX31_RS17665 0.24 +1.9 83,680 - EX31_RS17665 0.24 +1.4 83,741 + EX31_RS17665 0.29 +1.2 83,843 + EX31_RS17665 0.38 -0.0 83,843 + EX31_RS17665 0.38 -0.3 83,843 + EX31_RS17665 0.38 +1.0 83,844 - EX31_RS17665 0.38 +2.7 83,844 - EX31_RS17665 0.38 +0.1 83,847 + EX31_RS17665 0.38 +0.3 83,848 - EX31_RS17665 0.38 +0.7 83,882 - EX31_RS17665 0.41 -1.3 83,889 + EX31_RS17665 0.41 -1.5 84,030 + EX31_RS17665 0.53 -2.3 84,031 - EX31_RS17665 0.53 -0.3 84,031 - EX31_RS17665 0.53 +1.4 84,031 - EX31_RS17665 0.53 +0.7 84,031 - EX31_RS17665 0.53 +0.7 84,031 - EX31_RS17665 0.53 -0.4 84,031 - EX31_RS17665 0.53 -1.6 84,032 + EX31_RS17665 0.53 +1.0 84,032 + EX31_RS17665 0.53 +1.7 84,033 - EX31_RS17665 0.53 +0.1 84,033 - EX31_RS17665 0.53 -1.3 84,033 - EX31_RS17665 0.53 +0.7 84,120 + EX31_RS17665 0.61 +0.5 84,120 + EX31_RS17665 0.61 +1.3 84,121 - EX31_RS17665 0.61 -1.6 84,265 + EX31_RS17665 0.73 -1.3 84,265 + EX31_RS17665 0.73 +0.7 84,266 - EX31_RS17665 0.73 -0.9 84,266 - EX31_RS17665 0.73 -0.2 84,340 - EX31_RS17665 0.79 -1.9 84,340 - EX31_RS17665 0.79 -0.3
Or see this region's nucleotide sequence