Strain Fitness in Rahnella sp. WP5 around EX31_RS17555

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17550 and EX31_RS17555 overlap by 4 nucleotidesEX31_RS17555 and EX31_RS17560 are separated by 16 nucleotides EX31_RS17550: EX31_RS17550 - dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein, at 62,560 to 64,356 _RS17550 EX31_RS17555: EX31_RS17555 - ABC transporter ATP-binding protein, at 64,353 to 65,138 _RS17555 EX31_RS17560: EX31_RS17560 - FadR family transcriptional regulator, at 65,155 to 65,928 _RS17560 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 63.375 kb on + strand, within EX31_RS17550at 63.375 kb on + strand, within EX31_RS17550at 63.376 kb on - strand, within EX31_RS17550at 63.434 kb on + strand, within EX31_RS17550at 63.434 kb on + strand, within EX31_RS17550at 63.434 kb on + strand, within EX31_RS17550at 63.435 kb on - strand, within EX31_RS17550at 63.435 kb on - strand, within EX31_RS17550at 63.457 kb on - strand, within EX31_RS17550at 63.488 kb on + strand, within EX31_RS17550at 63.488 kb on + strand, within EX31_RS17550at 63.489 kb on - strand, within EX31_RS17550at 63.498 kb on + strand, within EX31_RS17550at 63.669 kb on - strand, within EX31_RS17550at 63.706 kb on + strand, within EX31_RS17550at 63.706 kb on + strand, within EX31_RS17550at 63.780 kb on + strand, within EX31_RS17550at 64.074 kb on + strand, within EX31_RS17550at 64.124 kb on + strand, within EX31_RS17550at 64.124 kb on + strand, within EX31_RS17550at 64.125 kb on - strand, within EX31_RS17550at 64.143 kb on + strand, within EX31_RS17550at 64.186 kb on - strandat 64.246 kb on + strandat 64.246 kb on + strandat 64.246 kb on + strandat 64.246 kb on + strandat 64.246 kb on + strandat 64.247 kb on - strandat 64.247 kb on - strandat 64.247 kb on - strandat 64.321 kb on + strandat 64.321 kb on + strandat 64.321 kb on + strandat 64.321 kb on + strandat 64.321 kb on + strandat 64.352 kb on + strandat 64.352 kb on + strandat 64.401 kb on - strandat 64.454 kb on - strand, within EX31_RS17555at 64.512 kb on - strand, within EX31_RS17555at 64.517 kb on + strand, within EX31_RS17555at 64.602 kb on - strand, within EX31_RS17555at 64.714 kb on - strand, within EX31_RS17555at 64.714 kb on - strand, within EX31_RS17555at 64.717 kb on + strand, within EX31_RS17555at 64.717 kb on + strand, within EX31_RS17555at 64.718 kb on - strand, within EX31_RS17555at 64.742 kb on + strand, within EX31_RS17555at 64.743 kb on - strand, within EX31_RS17555at 64.743 kb on - strand, within EX31_RS17555at 64.907 kb on - strand, within EX31_RS17555at 64.907 kb on - strand, within EX31_RS17555at 64.907 kb on - strand, within EX31_RS17555at 64.907 kb on - strand, within EX31_RS17555at 64.912 kb on + strand, within EX31_RS17555at 64.912 kb on + strand, within EX31_RS17555at 64.912 kb on + strand, within EX31_RS17555at 64.913 kb on - strand, within EX31_RS17555at 64.940 kb on - strand, within EX31_RS17555at 64.974 kb on + strand, within EX31_RS17555at 64.974 kb on + strand, within EX31_RS17555at 64.975 kb on - strand, within EX31_RS17555at 64.975 kb on - strand, within EX31_RS17555at 64.983 kb on - strand, within EX31_RS17555at 64.997 kb on - strand, within EX31_RS17555at 65.037 kb on + strand, within EX31_RS17555at 65.037 kb on + strand, within EX31_RS17555at 65.037 kb on + strand, within EX31_RS17555at 65.038 kb on - strand, within EX31_RS17555at 65.038 kb on - strand, within EX31_RS17555at 65.038 kb on - strand, within EX31_RS17555at 65.038 kb on - strand, within EX31_RS17555at 65.038 kb on - strand, within EX31_RS17555at 65.038 kb on - strand, within EX31_RS17555at 65.050 kb on + strand, within EX31_RS17555at 65.053 kb on + strand, within EX31_RS17555at 65.053 kb on + strand, within EX31_RS17555at 65.054 kb on - strand, within EX31_RS17555at 65.100 kb on + strandat 65.136 kb on + strandat 65.154 kb on + strandat 65.394 kb on + strand, within EX31_RS17560at 65.440 kb on + strand, within EX31_RS17560at 65.472 kb on + strand, within EX31_RS17560at 65.473 kb on - strand, within EX31_RS17560at 65.473 kb on - strand, within EX31_RS17560at 65.476 kb on + strand, within EX31_RS17560at 65.476 kb on + strand, within EX31_RS17560at 65.476 kb on + strand, within EX31_RS17560at 65.476 kb on + strand, within EX31_RS17560at 65.477 kb on - strand, within EX31_RS17560at 65.477 kb on - strand, within EX31_RS17560at 65.477 kb on - strand, within EX31_RS17560at 65.656 kb on + strand, within EX31_RS17560at 65.683 kb on - strand, within EX31_RS17560at 65.733 kb on + strand, within EX31_RS17560at 65.733 kb on + strand, within EX31_RS17560at 65.737 kb on + strand, within EX31_RS17560at 65.738 kb on - strand, within EX31_RS17560at 65.738 kb on - strand, within EX31_RS17560at 65.957 kb on + strandat 65.957 kb on + strandat 65.957 kb on + strandat 65.957 kb on + strandat 65.957 kb on + strandat 65.957 kb on + strandat 65.957 kb on + strandat 65.958 kb on - strandat 65.958 kb on - strandat 65.958 kb on - strandat 65.958 kb on - strandat 65.981 kb on + strandat 65.982 kb on - strandat 65.982 kb on - strandat 65.982 kb on - strandat 65.982 kb on - strandat 66.060 kb on + strandat 66.073 kb on + strandat 66.083 kb on + strandat 66.083 kb on + strandat 66.083 kb on + strandat 66.103 kb on + strandat 66.118 kb on + strandat 66.118 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.120 kb on + strandat 66.121 kb on - strandat 66.121 kb on - strandat 66.121 kb on - strandat 66.121 kb on - strandat 66.121 kb on - strandat 66.121 kb on - strandat 66.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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63,375 + EX31_RS17550 0.45 -0.9
63,375 + EX31_RS17550 0.45 +3.3
63,376 - EX31_RS17550 0.45 -0.0
63,434 + EX31_RS17550 0.49 +0.6
63,434 + EX31_RS17550 0.49 +0.5
63,434 + EX31_RS17550 0.49 +2.1
63,435 - EX31_RS17550 0.49 +1.9
63,435 - EX31_RS17550 0.49 -1.3
63,457 - EX31_RS17550 0.50 +0.7
63,488 + EX31_RS17550 0.52 +1.8
63,488 + EX31_RS17550 0.52 +0.3
63,489 - EX31_RS17550 0.52 +1.0
63,498 + EX31_RS17550 0.52 +0.0
63,669 - EX31_RS17550 0.62 +2.7
63,706 + EX31_RS17550 0.64 -0.3
63,706 + EX31_RS17550 0.64 -0.3
63,780 + EX31_RS17550 0.68 -0.4
64,074 + EX31_RS17550 0.84 -0.9
64,124 + EX31_RS17550 0.87 +0.7
64,124 + EX31_RS17550 0.87 -1.3
64,125 - EX31_RS17550 0.87 +0.7
64,143 + EX31_RS17550 0.88 -1.3
64,186 - -1.2
64,246 + -0.3
64,246 + -0.6
64,246 + +1.5
64,246 + -0.6
64,246 + +0.0
64,247 - -2.5
64,247 - +0.7
64,247 - +1.7
64,321 + -0.6
64,321 + +0.9
64,321 + +0.9
64,321 + +0.1
64,321 + +0.7
64,352 + +0.3
64,352 + +0.4
64,401 - -0.6
64,454 - EX31_RS17555 0.13 +0.8
64,512 - EX31_RS17555 0.20 -3.1
64,517 + EX31_RS17555 0.21 +1.4
64,602 - EX31_RS17555 0.32 -1.1
64,714 - EX31_RS17555 0.46 -2.6
64,714 - EX31_RS17555 0.46 -0.1
64,717 + EX31_RS17555 0.46 -1.3
64,717 + EX31_RS17555 0.46 +1.5
64,718 - EX31_RS17555 0.46 -1.6
64,742 + EX31_RS17555 0.49 -0.3
64,743 - EX31_RS17555 0.50 -0.9
64,743 - EX31_RS17555 0.50 +0.5
64,907 - EX31_RS17555 0.70 -0.4
64,907 - EX31_RS17555 0.70 +0.3
64,907 - EX31_RS17555 0.70 -0.0
64,907 - EX31_RS17555 0.70 +0.7
64,912 + EX31_RS17555 0.71 -0.8
64,912 + EX31_RS17555 0.71 +1.3
64,912 + EX31_RS17555 0.71 +2.2
64,913 - EX31_RS17555 0.71 +1.5
64,940 - EX31_RS17555 0.75 +3.0
64,974 + EX31_RS17555 0.79 +0.4
64,974 + EX31_RS17555 0.79 -1.9
64,975 - EX31_RS17555 0.79 +2.6
64,975 - EX31_RS17555 0.79 +0.3
64,983 - EX31_RS17555 0.80 -0.3
64,997 - EX31_RS17555 0.82 -0.3
65,037 + EX31_RS17555 0.87 +2.0
65,037 + EX31_RS17555 0.87 -0.6
65,037 + EX31_RS17555 0.87 +0.1
65,038 - EX31_RS17555 0.87 +0.7
65,038 - EX31_RS17555 0.87 -0.8
65,038 - EX31_RS17555 0.87 +0.7
65,038 - EX31_RS17555 0.87 +1.5
65,038 - EX31_RS17555 0.87 -0.4
65,038 - EX31_RS17555 0.87 -0.7
65,050 + EX31_RS17555 0.89 +0.7
65,053 + EX31_RS17555 0.89 +0.7
65,053 + EX31_RS17555 0.89 -0.9
65,054 - EX31_RS17555 0.89 +0.1
65,100 + +1.5
65,136 + -0.3
65,154 + +0.5
65,394 + EX31_RS17560 0.31 +1.9
65,440 + EX31_RS17560 0.37 +0.9
65,472 + EX31_RS17560 0.41 +1.4
65,473 - EX31_RS17560 0.41 +1.9
65,473 - EX31_RS17560 0.41 +1.7
65,476 + EX31_RS17560 0.41 -0.6
65,476 + EX31_RS17560 0.41 -0.0
65,476 + EX31_RS17560 0.41 -0.3
65,476 + EX31_RS17560 0.41 +0.7
65,477 - EX31_RS17560 0.42 +0.5
65,477 - EX31_RS17560 0.42 -1.3
65,477 - EX31_RS17560 0.42 +0.3
65,656 + EX31_RS17560 0.65 +1.3
65,683 - EX31_RS17560 0.68 +0.5
65,733 + EX31_RS17560 0.75 +0.1
65,733 + EX31_RS17560 0.75 +0.1
65,737 + EX31_RS17560 0.75 +0.6
65,738 - EX31_RS17560 0.75 +0.5
65,738 - EX31_RS17560 0.75 +0.3
65,957 + +0.8
65,957 + +0.7
65,957 + -1.8
65,957 + +0.7
65,957 + -0.6
65,957 + +2.7
65,957 + -1.3
65,958 - -1.6
65,958 - +0.3
65,958 - -0.3
65,958 - +0.7
65,981 + -0.0
65,982 - -0.9
65,982 - +0.2
65,982 - +2.5
65,982 - +2.3
66,060 + -1.8
66,073 + -0.5
66,083 + +0.7
66,083 + -1.3
66,083 + -0.3
66,103 + +0.7
66,118 + +3.0
66,118 + +0.1
66,120 + +1.4
66,120 + -0.1
66,120 + +0.1
66,120 + -0.3
66,120 + +0.5
66,120 + +2.3
66,120 + +0.1
66,120 + +0.5
66,120 + +0.7
66,120 + -0.9
66,120 + +0.5
66,120 + +0.9
66,120 + +0.8
66,120 + +1.6
66,121 - +0.9
66,121 - +0.7
66,121 - +2.0
66,121 - +0.3
66,121 - +0.0
66,121 - +0.5
66,135 - +0.7

Or see this region's nucleotide sequence