Strain Fitness in Rahnella sp. WP5 around EX31_RS15875

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15870 and EX31_RS15875 are separated by 252 nucleotidesEX31_RS15875 and EX31_RS15880 are separated by 7 nucleotides EX31_RS15870: EX31_RS15870 - glutamate--ammonia ligase, at 29,966 to 31,375 _RS15870 EX31_RS15875: EX31_RS15875 - nitrogen regulation protein NR(II), at 31,628 to 32,677 _RS15875 EX31_RS15880: EX31_RS15880 - nitrogen regulation protein NR(I), at 32,685 to 34,097 _RS15880 Position (kb) 31 32 33Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 30.680 kb on + strand, within EX31_RS15870at 30.686 kb on + strand, within EX31_RS15870at 30.686 kb on + strand, within EX31_RS15870at 30.687 kb on - strand, within EX31_RS15870at 30.827 kb on + strand, within EX31_RS15870at 30.857 kb on + strand, within EX31_RS15870at 30.857 kb on + strand, within EX31_RS15870at 30.884 kb on - strand, within EX31_RS15870at 30.923 kb on + strand, within EX31_RS15870at 31.011 kb on + strand, within EX31_RS15870at 31.011 kb on + strand, within EX31_RS15870at 31.011 kb on + strand, within EX31_RS15870at 31.011 kb on + strand, within EX31_RS15870at 31.011 kb on + strand, within EX31_RS15870at 31.012 kb on - strand, within EX31_RS15870at 31.033 kb on + strand, within EX31_RS15870at 31.070 kb on + strand, within EX31_RS15870at 31.112 kb on - strand, within EX31_RS15870at 31.292 kb on + strandat 31.292 kb on + strandat 31.292 kb on + strandat 31.292 kb on + strandat 31.292 kb on + strandat 31.292 kb on + strandat 31.293 kb on - strandat 31.293 kb on - strandat 31.293 kb on - strandat 31.294 kb on + strandat 31.294 kb on + strandat 31.295 kb on - strandat 31.361 kb on + strandat 31.361 kb on + strandat 31.364 kb on + strandat 31.364 kb on + strandat 31.364 kb on + strandat 31.364 kb on + strandat 31.426 kb on + strandat 31.427 kb on - strandat 31.429 kb on + strandat 31.474 kb on + strandat 31.474 kb on + strandat 31.474 kb on + strandat 31.478 kb on + strandat 31.478 kb on + strandat 31.479 kb on - strandat 31.479 kb on - strandat 31.488 kb on + strandat 31.488 kb on + strandat 31.488 kb on + strandat 31.488 kb on + strandat 31.488 kb on + strandat 31.490 kb on + strandat 31.490 kb on + strandat 31.490 kb on + strandat 31.491 kb on - strandat 31.491 kb on - strandat 31.491 kb on - strandat 31.491 kb on - strandat 31.491 kb on - strandat 31.491 kb on - strandat 31.594 kb on + strandat 31.695 kb on + strandat 31.695 kb on + strandat 31.695 kb on + strandat 31.695 kb on + strandat 31.718 kb on + strandat 31.718 kb on + strandat 31.718 kb on + strandat 31.718 kb on + strandat 31.718 kb on + strandat 31.719 kb on - strandat 31.719 kb on - strandat 31.744 kb on - strand, within EX31_RS15875at 31.800 kb on - strand, within EX31_RS15875at 31.821 kb on + strand, within EX31_RS15875at 31.822 kb on - strand, within EX31_RS15875at 31.822 kb on - strand, within EX31_RS15875at 31.882 kb on - strand, within EX31_RS15875at 31.992 kb on + strand, within EX31_RS15875at 31.993 kb on - strand, within EX31_RS15875at 31.993 kb on - strand, within EX31_RS15875at 31.993 kb on - strand, within EX31_RS15875at 32.088 kb on + strand, within EX31_RS15875at 32.088 kb on + strand, within EX31_RS15875at 32.088 kb on + strand, within EX31_RS15875at 32.088 kb on + strand, within EX31_RS15875at 32.088 kb on + strand, within EX31_RS15875at 32.088 kb on + strand, within EX31_RS15875at 32.088 kb on + strand, within EX31_RS15875at 32.088 kb on + strand, within EX31_RS15875at 32.089 kb on - strand, within EX31_RS15875at 32.089 kb on - strand, within EX31_RS15875at 32.089 kb on - strand, within EX31_RS15875at 32.089 kb on - strand, within EX31_RS15875at 32.128 kb on + strand, within EX31_RS15875at 32.128 kb on + strand, within EX31_RS15875at 32.129 kb on - strand, within EX31_RS15875at 32.129 kb on - strand, within EX31_RS15875at 32.129 kb on - strand, within EX31_RS15875at 32.129 kb on - strand, within EX31_RS15875at 32.129 kb on - strand, within EX31_RS15875at 32.140 kb on + strand, within EX31_RS15875at 32.141 kb on - strand, within EX31_RS15875at 32.221 kb on + strand, within EX31_RS15875at 32.221 kb on + strand, within EX31_RS15875at 32.221 kb on + strand, within EX31_RS15875at 32.221 kb on + strand, within EX31_RS15875at 32.221 kb on + strand, within EX31_RS15875at 32.221 kb on + strand, within EX31_RS15875at 32.221 kb on + strand, within EX31_RS15875at 32.222 kb on - strand, within EX31_RS15875at 32.222 kb on - strand, within EX31_RS15875at 32.297 kb on + strand, within EX31_RS15875at 32.297 kb on + strand, within EX31_RS15875at 32.297 kb on + strand, within EX31_RS15875at 32.298 kb on - strand, within EX31_RS15875at 32.298 kb on - strand, within EX31_RS15875at 32.298 kb on - strand, within EX31_RS15875at 32.340 kb on + strand, within EX31_RS15875at 32.340 kb on + strand, within EX31_RS15875at 32.340 kb on + strand, within EX31_RS15875at 32.340 kb on + strand, within EX31_RS15875at 32.340 kb on + strand, within EX31_RS15875at 32.340 kb on + strand, within EX31_RS15875at 32.355 kb on + strand, within EX31_RS15875at 32.376 kb on + strand, within EX31_RS15875at 32.407 kb on + strand, within EX31_RS15875at 32.407 kb on + strand, within EX31_RS15875at 32.407 kb on + strand, within EX31_RS15875at 32.407 kb on + strand, within EX31_RS15875at 32.407 kb on + strand, within EX31_RS15875at 32.407 kb on + strand, within EX31_RS15875at 32.407 kb on + strand, within EX31_RS15875at 32.408 kb on - strand, within EX31_RS15875at 32.408 kb on - strand, within EX31_RS15875at 32.408 kb on - strand, within EX31_RS15875at 32.408 kb on - strand, within EX31_RS15875at 32.408 kb on - strand, within EX31_RS15875at 32.408 kb on - strand, within EX31_RS15875at 32.412 kb on + strand, within EX31_RS15875at 32.413 kb on - strand, within EX31_RS15875at 32.422 kb on + strand, within EX31_RS15875at 32.422 kb on + strand, within EX31_RS15875at 32.437 kb on + strand, within EX31_RS15875at 32.437 kb on + strand, within EX31_RS15875at 32.437 kb on + strand, within EX31_RS15875at 32.437 kb on + strand, within EX31_RS15875at 32.437 kb on + strand, within EX31_RS15875at 32.438 kb on - strand, within EX31_RS15875at 32.438 kb on - strand, within EX31_RS15875at 32.442 kb on + strand, within EX31_RS15875at 32.442 kb on + strand, within EX31_RS15875at 32.443 kb on - strand, within EX31_RS15875at 32.443 kb on - strand, within EX31_RS15875at 32.624 kb on - strandat 32.684 kb on + strandat 32.684 kb on + strandat 32.684 kb on + strandat 32.684 kb on + strandat 32.684 kb on + strandat 32.684 kb on + strandat 32.684 kb on + strandat 32.685 kb on - strandat 32.685 kb on - strandat 32.699 kb on - strandat 32.720 kb on + strandat 32.721 kb on - strandat 32.721 kb on - strandat 32.738 kb on - strandat 32.846 kb on + strand, within EX31_RS15880at 32.881 kb on + strand, within EX31_RS15880at 32.882 kb on - strand, within EX31_RS15880at 32.882 kb on - strand, within EX31_RS15880at 32.892 kb on - strand, within EX31_RS15880at 32.923 kb on + strand, within EX31_RS15880at 32.923 kb on + strand, within EX31_RS15880at 32.924 kb on - strand, within EX31_RS15880at 32.964 kb on + strand, within EX31_RS15880at 32.964 kb on + strand, within EX31_RS15880at 32.964 kb on + strand, within EX31_RS15880at 33.136 kb on + strand, within EX31_RS15880at 33.185 kb on + strand, within EX31_RS15880at 33.185 kb on + strand, within EX31_RS15880at 33.185 kb on + strand, within EX31_RS15880at 33.229 kb on + strand, within EX31_RS15880at 33.229 kb on + strand, within EX31_RS15880at 33.230 kb on - strand, within EX31_RS15880at 33.230 kb on - strand, within EX31_RS15880at 33.276 kb on - strand, within EX31_RS15880at 33.314 kb on - strand, within EX31_RS15880at 33.416 kb on + strand, within EX31_RS15880at 33.417 kb on - strand, within EX31_RS15880at 33.472 kb on - strand, within EX31_RS15880at 33.472 kb on - strand, within EX31_RS15880at 33.512 kb on + strand, within EX31_RS15880at 33.512 kb on + strand, within EX31_RS15880at 33.512 kb on + strand, within EX31_RS15880at 33.513 kb on - strand, within EX31_RS15880at 33.513 kb on - strand, within EX31_RS15880at 33.513 kb on - strand, within EX31_RS15880at 33.516 kb on - strand, within EX31_RS15880at 33.545 kb on - strand, within EX31_RS15880at 33.577 kb on + strand, within EX31_RS15880at 33.577 kb on + strand, within EX31_RS15880

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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30,680 + EX31_RS15870 0.51 -1.4
30,686 + EX31_RS15870 0.51 -2.7
30,686 + EX31_RS15870 0.51 -2.0
30,687 - EX31_RS15870 0.51 -0.4
30,827 + EX31_RS15870 0.61 -0.8
30,857 + EX31_RS15870 0.63 +0.2
30,857 + EX31_RS15870 0.63 -0.4
30,884 - EX31_RS15870 0.65 -0.5
30,923 + EX31_RS15870 0.68 -1.1
31,011 + EX31_RS15870 0.74 +0.2
31,011 + EX31_RS15870 0.74 +0.2
31,011 + EX31_RS15870 0.74 -1.1
31,011 + EX31_RS15870 0.74 -0.4
31,011 + EX31_RS15870 0.74 -2.1
31,012 - EX31_RS15870 0.74 -0.4
31,033 + EX31_RS15870 0.76 +0.2
31,070 + EX31_RS15870 0.78 -3.0
31,112 - EX31_RS15870 0.81 -1.8
31,292 + -1.8
31,292 + -1.4
31,292 + -0.4
31,292 + -0.8
31,292 + -1.1
31,292 + +1.2
31,293 - -1.4
31,293 - +0.2
31,293 - -2.1
31,294 + -1.6
31,294 + +0.2
31,295 - -2.2
31,361 + -2.7
31,361 + -1.6
31,364 + -1.1
31,364 + -1.8
31,364 + -1.8
31,364 + -1.6
31,426 + +1.8
31,427 - -0.9
31,429 + -1.0
31,474 + +0.7
31,474 + +0.4
31,474 + -0.8
31,478 + -0.8
31,478 + +0.8
31,479 - -0.9
31,479 - +0.3
31,488 + +0.2
31,488 + -0.0
31,488 + +1.4
31,488 + +0.7
31,488 + -0.2
31,490 + +0.8
31,490 + +1.4
31,490 + +0.3
31,491 - -1.7
31,491 - -2.2
31,491 - -2.5
31,491 - +0.6
31,491 - -0.8
31,491 - -1.1
31,594 + +0.2
31,695 + -2.8
31,695 + -1.6
31,695 + -2.3
31,695 + -0.1
31,718 + -3.4
31,718 + -1.4
31,718 + -2.3
31,718 + -2.1
31,718 + -3.4
31,719 - -2.4
31,719 - -0.1
31,744 - EX31_RS15875 0.11 -2.0
31,800 - EX31_RS15875 0.16 -1.4
31,821 + EX31_RS15875 0.18 -3.7
31,822 - EX31_RS15875 0.18 -1.9
31,822 - EX31_RS15875 0.18 -2.8
31,882 - EX31_RS15875 0.24 -3.0
31,992 + EX31_RS15875 0.35 -2.2
31,993 - EX31_RS15875 0.35 -3.4
31,993 - EX31_RS15875 0.35 -3.9
31,993 - EX31_RS15875 0.35 -0.8
32,088 + EX31_RS15875 0.44 -2.2
32,088 + EX31_RS15875 0.44 -3.5
32,088 + EX31_RS15875 0.44 -3.0
32,088 + EX31_RS15875 0.44 -3.2
32,088 + EX31_RS15875 0.44 -3.2
32,088 + EX31_RS15875 0.44 -2.0
32,088 + EX31_RS15875 0.44 -4.1
32,088 + EX31_RS15875 0.44 -2.4
32,089 - EX31_RS15875 0.44 -3.8
32,089 - EX31_RS15875 0.44 -3.8
32,089 - EX31_RS15875 0.44 +1.2
32,089 - EX31_RS15875 0.44 -3.2
32,128 + EX31_RS15875 0.48 -2.1
32,128 + EX31_RS15875 0.48 -3.1
32,129 - EX31_RS15875 0.48 -3.0
32,129 - EX31_RS15875 0.48 -2.5
32,129 - EX31_RS15875 0.48 -1.4
32,129 - EX31_RS15875 0.48 -2.0
32,129 - EX31_RS15875 0.48 -3.7
32,140 + EX31_RS15875 0.49 -4.1
32,141 - EX31_RS15875 0.49 -0.4
32,221 + EX31_RS15875 0.56 -2.4
32,221 + EX31_RS15875 0.56 -3.4
32,221 + EX31_RS15875 0.56 -2.9
32,221 + EX31_RS15875 0.56 -3.0
32,221 + EX31_RS15875 0.56 -1.6
32,221 + EX31_RS15875 0.56 -2.0
32,221 + EX31_RS15875 0.56 -2.1
32,222 - EX31_RS15875 0.57 -2.5
32,222 - EX31_RS15875 0.57 -2.7
32,297 + EX31_RS15875 0.64 -2.2
32,297 + EX31_RS15875 0.64 -2.7
32,297 + EX31_RS15875 0.64 -2.7
32,298 - EX31_RS15875 0.64 -1.1
32,298 - EX31_RS15875 0.64 -2.2
32,298 - EX31_RS15875 0.64 -1.6
32,340 + EX31_RS15875 0.68 +0.1
32,340 + EX31_RS15875 0.68 -2.9
32,340 + EX31_RS15875 0.68 -2.2
32,340 + EX31_RS15875 0.68 -3.0
32,340 + EX31_RS15875 0.68 -4.1
32,340 + EX31_RS15875 0.68 -3.0
32,355 + EX31_RS15875 0.69 -2.8
32,376 + EX31_RS15875 0.71 -1.1
32,407 + EX31_RS15875 0.74 -2.5
32,407 + EX31_RS15875 0.74 +0.2
32,407 + EX31_RS15875 0.74 -2.2
32,407 + EX31_RS15875 0.74 -2.5
32,407 + EX31_RS15875 0.74 -0.4
32,407 + EX31_RS15875 0.74 -3.5
32,407 + EX31_RS15875 0.74 -0.9
32,408 - EX31_RS15875 0.74 -2.9
32,408 - EX31_RS15875 0.74 -1.4
32,408 - EX31_RS15875 0.74 -3.0
32,408 - EX31_RS15875 0.74 -4.4
32,408 - EX31_RS15875 0.74 -3.0
32,408 - EX31_RS15875 0.74 -3.8
32,412 + EX31_RS15875 0.75 -2.2
32,413 - EX31_RS15875 0.75 -3.0
32,422 + EX31_RS15875 0.76 -2.4
32,422 + EX31_RS15875 0.76 -1.7
32,437 + EX31_RS15875 0.77 -2.8
32,437 + EX31_RS15875 0.77 -3.2
32,437 + EX31_RS15875 0.77 -1.0
32,437 + EX31_RS15875 0.77 -4.1
32,437 + EX31_RS15875 0.77 -3.2
32,438 - EX31_RS15875 0.77 -3.1
32,438 - EX31_RS15875 0.77 -0.8
32,442 + EX31_RS15875 0.78 -2.5
32,442 + EX31_RS15875 0.78 -0.8
32,443 - EX31_RS15875 0.78 -4.1
32,443 - EX31_RS15875 0.78 -1.4
32,624 - -2.6
32,684 + -1.8
32,684 + -1.4
32,684 + -2.4
32,684 + -2.2
32,684 + +0.2
32,684 + +0.2
32,684 + +0.9
32,685 - -3.1
32,685 - -2.0
32,699 - -3.4
32,720 + +1.0
32,721 - -3.2
32,721 - -1.4
32,738 - -3.6
32,846 + EX31_RS15880 0.11 -1.4
32,881 + EX31_RS15880 0.14 +1.2
32,882 - EX31_RS15880 0.14 -1.0
32,882 - EX31_RS15880 0.14 -3.0
32,892 - EX31_RS15880 0.15 -3.6
32,923 + EX31_RS15880 0.17 -2.5
32,923 + EX31_RS15880 0.17 -1.1
32,924 - EX31_RS15880 0.17 -2.8
32,964 + EX31_RS15880 0.20 -3.8
32,964 + EX31_RS15880 0.20 -2.2
32,964 + EX31_RS15880 0.20 -3.7
33,136 + EX31_RS15880 0.32 -3.4
33,185 + EX31_RS15880 0.35 -3.2
33,185 + EX31_RS15880 0.35 -2.5
33,185 + EX31_RS15880 0.35 -2.8
33,229 + EX31_RS15880 0.38 -2.6
33,229 + EX31_RS15880 0.38 -4.3
33,230 - EX31_RS15880 0.39 -0.4
33,230 - EX31_RS15880 0.39 -1.9
33,276 - EX31_RS15880 0.42 -3.0
33,314 - EX31_RS15880 0.45 -2.1
33,416 + EX31_RS15880 0.52 -2.6
33,417 - EX31_RS15880 0.52 -2.7
33,472 - EX31_RS15880 0.56 -0.4
33,472 - EX31_RS15880 0.56 -1.1
33,512 + EX31_RS15880 0.59 -1.6
33,512 + EX31_RS15880 0.59 -4.0
33,512 + EX31_RS15880 0.59 -1.6
33,513 - EX31_RS15880 0.59 -3.5
33,513 - EX31_RS15880 0.59 -2.4
33,513 - EX31_RS15880 0.59 -1.2
33,516 - EX31_RS15880 0.59 -3.0
33,545 - EX31_RS15880 0.61 -2.2
33,577 + EX31_RS15880 0.63 -3.4
33,577 + EX31_RS15880 0.63 +0.4

Or see this region's nucleotide sequence