Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15620 and EX31_RS15625 are separated by 189 nucleotides EX31_RS15625 and EX31_RS15630 are separated by 415 nucleotides EX31_RS15630 and EX31_RS15635 are separated by 126 nucleotides
EX31_RS15620: EX31_RS15620 - branched-chain amino acid ABC transporter permease, at 21,056 to 21,970
_RS15620
EX31_RS15625: EX31_RS15625 - branched-chain amino acid ABC transporter substrate-binding protein, at 22,160 to 23,284
_RS15625
EX31_RS15630: EX31_RS15630 - YgdI/YgdR family lipoprotein, at 23,700 to 23,915
_RS15630
EX31_RS15635: EX31_RS15635 - HAMP domain-containing protein, at 24,042 to 25,871
_RS15635
Position (kb) 22
23
24 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 21.254 kb on - strand, within EX31_RS15620 at 21.303 kb on + strand, within EX31_RS15620 at 21.370 kb on + strand, within EX31_RS15620 at 21.371 kb on - strand, within EX31_RS15620 at 21.385 kb on + strand, within EX31_RS15620 at 21.386 kb on - strand, within EX31_RS15620 at 21.386 kb on - strand, within EX31_RS15620 at 21.436 kb on + strand, within EX31_RS15620 at 21.437 kb on - strand, within EX31_RS15620 at 21.437 kb on - strand, within EX31_RS15620 at 21.437 kb on - strand, within EX31_RS15620 at 21.437 kb on - strand, within EX31_RS15620 at 21.454 kb on + strand, within EX31_RS15620 at 21.461 kb on - strand, within EX31_RS15620 at 21.519 kb on + strand, within EX31_RS15620 at 21.519 kb on + strand, within EX31_RS15620 at 21.520 kb on - strand, within EX31_RS15620 at 21.631 kb on + strand, within EX31_RS15620 at 21.632 kb on - strand, within EX31_RS15620 at 21.691 kb on + strand, within EX31_RS15620 at 21.691 kb on + strand, within EX31_RS15620 at 21.694 kb on - strand, within EX31_RS15620 at 21.694 kb on - strand, within EX31_RS15620 at 21.721 kb on - strand, within EX31_RS15620 at 21.721 kb on - strand, within EX31_RS15620 at 21.826 kb on - strand, within EX31_RS15620 at 21.838 kb on + strand, within EX31_RS15620 at 21.839 kb on - strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.840 kb on + strand, within EX31_RS15620 at 21.841 kb on - strand, within EX31_RS15620 at 21.841 kb on - strand, within EX31_RS15620 at 21.894 kb on + strand at 21.894 kb on + strand at 21.894 kb on + strand at 21.915 kb on + strand at 21.915 kb on + strand at 21.940 kb on + strand at 21.940 kb on + strand at 21.941 kb on - strand at 21.941 kb on - strand at 21.974 kb on + strand at 21.974 kb on + strand at 21.974 kb on + strand at 21.975 kb on - strand at 22.086 kb on - strand at 22.090 kb on + strand at 22.094 kb on + strand at 22.094 kb on + strand at 22.094 kb on + strand at 22.095 kb on - strand at 22.150 kb on + strand at 22.150 kb on + strand at 22.150 kb on + strand at 22.150 kb on + strand at 22.151 kb on - strand at 22.151 kb on - strand at 22.162 kb on - strand at 22.202 kb on - strand at 22.204 kb on - strand at 22.213 kb on - strand at 22.213 kb on - strand at 22.238 kb on - strand at 22.238 kb on - strand at 22.362 kb on + strand, within EX31_RS15625 at 22.362 kb on + strand, within EX31_RS15625 at 22.362 kb on + strand, within EX31_RS15625 at 22.362 kb on + strand, within EX31_RS15625 at 22.363 kb on - strand, within EX31_RS15625 at 22.363 kb on - strand, within EX31_RS15625 at 22.378 kb on - strand, within EX31_RS15625 at 22.378 kb on - strand, within EX31_RS15625 at 22.378 kb on - strand, within EX31_RS15625 at 22.481 kb on - strand, within EX31_RS15625 at 22.481 kb on - strand, within EX31_RS15625 at 22.481 kb on - strand, within EX31_RS15625 at 22.481 kb on - strand, within EX31_RS15625 at 22.483 kb on - strand, within EX31_RS15625 at 22.692 kb on + strand, within EX31_RS15625 at 22.692 kb on + strand, within EX31_RS15625 at 22.692 kb on + strand, within EX31_RS15625 at 22.693 kb on - strand, within EX31_RS15625 at 22.693 kb on - strand, within EX31_RS15625 at 22.693 kb on - strand, within EX31_RS15625 at 22.693 kb on - strand, within EX31_RS15625 at 22.693 kb on - strand, within EX31_RS15625 at 22.693 kb on - strand, within EX31_RS15625 at 22.693 kb on - strand, within EX31_RS15625 at 22.759 kb on - strand, within EX31_RS15625 at 22.815 kb on + strand, within EX31_RS15625 at 22.815 kb on + strand, within EX31_RS15625 at 22.815 kb on + strand, within EX31_RS15625 at 22.816 kb on - strand, within EX31_RS15625 at 22.816 kb on - strand, within EX31_RS15625 at 22.816 kb on - strand, within EX31_RS15625 at 22.816 kb on - strand, within EX31_RS15625 at 22.941 kb on + strand, within EX31_RS15625 at 22.941 kb on + strand, within EX31_RS15625 at 22.942 kb on - strand, within EX31_RS15625 at 22.964 kb on - strand, within EX31_RS15625 at 23.110 kb on + strand, within EX31_RS15625 at 23.110 kb on + strand, within EX31_RS15625 at 23.111 kb on - strand, within EX31_RS15625 at 23.250 kb on - strand at 23.298 kb on - strand at 23.338 kb on + strand at 23.338 kb on + strand at 23.339 kb on - strand at 23.363 kb on + strand at 23.364 kb on - strand at 23.391 kb on - strand at 23.397 kb on + strand at 23.445 kb on + strand at 23.456 kb on - strand at 23.456 kb on - strand at 23.464 kb on + strand at 23.465 kb on - strand at 23.512 kb on + strand at 23.513 kb on - strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.514 kb on + strand at 23.515 kb on - strand at 23.515 kb on - strand at 23.515 kb on - strand at 23.515 kb on - strand at 23.612 kb on + strand at 23.662 kb on - strand at 23.664 kb on + strand at 23.691 kb on + strand at 23.710 kb on + strand at 23.847 kb on + strand, within EX31_RS15630 at 23.847 kb on + strand, within EX31_RS15630 at 23.868 kb on + strand, within EX31_RS15630 at 23.891 kb on + strand, within EX31_RS15630 at 23.892 kb on - strand, within EX31_RS15630 at 23.913 kb on + strand at 23.938 kb on + strand at 23.938 kb on + strand at 23.975 kb on + strand at 23.992 kb on + strand at 23.992 kb on + strand at 23.992 kb on + strand at 23.992 kb on + strand at 23.992 kb on + strand at 23.992 kb on + strand at 23.992 kb on + strand at 23.992 kb on + strand at 23.993 kb on - strand at 23.993 kb on - strand at 24.053 kb on + strand at 24.180 kb on + strand at 24.181 kb on - strand at 24.249 kb on - strand, within EX31_RS15635 at 24.264 kb on + strand, within EX31_RS15635 at 24.265 kb on - strand, within EX31_RS15635 at 24.265 kb on - strand, within EX31_RS15635 at 24.265 kb on - strand, within EX31_RS15635 at 24.265 kb on - strand, within EX31_RS15635 at 24.265 kb on - strand, within EX31_RS15635 at 24.265 kb on - strand, within EX31_RS15635 at 24.265 kb on - strand, within EX31_RS15635
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 21,254 - EX31_RS15620 0.22 +0.4 21,303 + EX31_RS15620 0.27 +0.6 21,370 + EX31_RS15620 0.34 +0.6 21,371 - EX31_RS15620 0.34 -0.4 21,385 + EX31_RS15620 0.36 +1.2 21,386 - EX31_RS15620 0.36 +0.6 21,386 - EX31_RS15620 0.36 -1.0 21,436 + EX31_RS15620 0.42 +0.2 21,437 - EX31_RS15620 0.42 -1.0 21,437 - EX31_RS15620 0.42 -0.5 21,437 - EX31_RS15620 0.42 +0.2 21,437 - EX31_RS15620 0.42 -0.4 21,454 + EX31_RS15620 0.43 +0.3 21,461 - EX31_RS15620 0.44 +0.2 21,519 + EX31_RS15620 0.51 -3.3 21,519 + EX31_RS15620 0.51 +0.1 21,520 - EX31_RS15620 0.51 +1.0 21,631 + EX31_RS15620 0.63 +0.4 21,632 - EX31_RS15620 0.63 +1.2 21,691 + EX31_RS15620 0.69 -0.7 21,691 + EX31_RS15620 0.69 -0.1 21,694 - EX31_RS15620 0.70 +2.4 21,694 - EX31_RS15620 0.70 +0.2 21,721 - EX31_RS15620 0.73 -0.0 21,721 - EX31_RS15620 0.73 -0.8 21,826 - EX31_RS15620 0.84 -0.4 21,838 + EX31_RS15620 0.85 +0.1 21,839 - EX31_RS15620 0.86 -1.4 21,840 + EX31_RS15620 0.86 -1.0 21,840 + EX31_RS15620 0.86 -1.0 21,840 + EX31_RS15620 0.86 -1.7 21,840 + EX31_RS15620 0.86 +0.3 21,840 + EX31_RS15620 0.86 -0.1 21,840 + EX31_RS15620 0.86 -0.8 21,840 + EX31_RS15620 0.86 +2.0 21,841 - EX31_RS15620 0.86 -0.9 21,841 - EX31_RS15620 0.86 +0.6 21,894 + -0.4 21,894 + +0.9 21,894 + -0.4 21,915 + -1.2 21,915 + -0.4 21,940 + -1.3 21,940 + -2.4 21,941 - +2.8 21,941 - -0.3 21,974 + -2.0 21,974 + +3.2 21,974 + -1.2 21,975 - +0.4 22,086 - +0.0 22,090 + -2.4 22,094 + +1.2 22,094 + -2.2 22,094 + +0.4 22,095 - +0.6 22,150 + -0.3 22,150 + +0.6 22,150 + -1.0 22,150 + +0.6 22,151 - +1.6 22,151 - +1.2 22,162 - +4.1 22,202 - -0.2 22,204 - +1.2 22,213 - +0.8 22,213 - +1.0 22,238 - -1.3 22,238 - -1.2 22,362 + EX31_RS15625 0.18 +0.6 22,362 + EX31_RS15625 0.18 +0.6 22,362 + EX31_RS15625 0.18 -0.2 22,362 + EX31_RS15625 0.18 -1.7 22,363 - EX31_RS15625 0.18 +1.5 22,363 - EX31_RS15625 0.18 -1.7 22,378 - EX31_RS15625 0.19 +1.2 22,378 - EX31_RS15625 0.19 -1.0 22,378 - EX31_RS15625 0.19 -1.4 22,481 - EX31_RS15625 0.29 +1.4 22,481 - EX31_RS15625 0.29 +0.6 22,481 - EX31_RS15625 0.29 +0.6 22,481 - EX31_RS15625 0.29 +0.7 22,483 - EX31_RS15625 0.29 -2.5 22,692 + EX31_RS15625 0.47 -0.1 22,692 + EX31_RS15625 0.47 -1.8 22,692 + EX31_RS15625 0.47 -1.4 22,693 - EX31_RS15625 0.47 -1.4 22,693 - EX31_RS15625 0.47 +1.6 22,693 - EX31_RS15625 0.47 +0.5 22,693 - EX31_RS15625 0.47 -0.2 22,693 - EX31_RS15625 0.47 +2.4 22,693 - EX31_RS15625 0.47 +2.2 22,693 - EX31_RS15625 0.47 +2.6 22,759 - EX31_RS15625 0.53 +0.2 22,815 + EX31_RS15625 0.58 -0.3 22,815 + EX31_RS15625 0.58 +0.9 22,815 + EX31_RS15625 0.58 +1.2 22,816 - EX31_RS15625 0.58 +0.8 22,816 - EX31_RS15625 0.58 +1.2 22,816 - EX31_RS15625 0.58 -0.1 22,816 - EX31_RS15625 0.58 -1.1 22,941 + EX31_RS15625 0.69 +1.9 22,941 + EX31_RS15625 0.69 -0.4 22,942 - EX31_RS15625 0.70 +1.9 22,964 - EX31_RS15625 0.71 -2.8 23,110 + EX31_RS15625 0.84 +0.6 23,110 + EX31_RS15625 0.84 +2.2 23,111 - EX31_RS15625 0.85 +0.6 23,250 - +0.6 23,298 - -0.4 23,338 + -1.4 23,338 + -1.1 23,339 - -0.0 23,363 + +1.2 23,364 - -0.6 23,391 - -2.4 23,397 + -0.7 23,445 + +0.1 23,456 - -0.5 23,456 - -2.5 23,464 + -0.4 23,465 - +0.0 23,512 + +1.2 23,513 - +1.3 23,514 + +0.6 23,514 + -1.4 23,514 + -1.4 23,514 + -0.7 23,514 + +0.6 23,514 + -0.4 23,514 + +0.1 23,514 + -1.0 23,514 + -0.4 23,514 + +0.5 23,514 + -0.4 23,514 + +1.4 23,515 - +2.2 23,515 - -1.1 23,515 - +1.9 23,515 - -0.1 23,612 + -1.4 23,662 - -1.0 23,664 + -0.4 23,691 + +0.1 23,710 + -0.8 23,847 + EX31_RS15630 0.68 -0.5 23,847 + EX31_RS15630 0.68 +0.8 23,868 + EX31_RS15630 0.78 -1.0 23,891 + EX31_RS15630 0.88 +0.4 23,892 - EX31_RS15630 0.89 +0.6 23,913 + -2.7 23,938 + +0.0 23,938 + +0.3 23,975 + -1.7 23,992 + +1.6 23,992 + +0.8 23,992 + +1.3 23,992 + +0.6 23,992 + -1.7 23,992 + +2.6 23,992 + +2.8 23,992 + -0.4 23,993 - -0.7 23,993 - +1.8 24,053 + -0.4 24,180 + +1.0 24,181 - -0.7 24,249 - EX31_RS15635 0.11 +0.5 24,264 + EX31_RS15635 0.12 +2.6 24,265 - EX31_RS15635 0.12 -1.3 24,265 - EX31_RS15635 0.12 +1.0 24,265 - EX31_RS15635 0.12 -0.5 24,265 - EX31_RS15635 0.12 +1.3 24,265 - EX31_RS15635 0.12 +0.6 24,265 - EX31_RS15635 0.12 -0.4 24,265 - EX31_RS15635 0.12 +1.6
Or see this region's nucleotide sequence